Your job contains 1 sequence.
>psy15689
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR
YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD
PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI
TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS
LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15689
(295 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010416 - symbol:TH1 "TH1" species:7227 "Drosophil... 1037 9.5e-105 1
UNIPROTKB|F1NR08 - symbol:TH1L "Uncharacterized protein" ... 851 4.9e-85 1
UNIPROTKB|Q5ZIQ8 - symbol:TH1L "Uncharacterized protein" ... 851 4.9e-85 1
UNIPROTKB|Q8IXH7 - symbol:NELFCD "Negative elongation fac... 847 1.3e-84 1
MGI|MGI:1926424 - symbol:Nelfcd "negative elongation fact... 847 1.3e-84 1
UNIPROTKB|F1PIH1 - symbol:TH1L "Uncharacterized protein" ... 845 2.1e-84 1
UNIPROTKB|F1MW69 - symbol:TH1L "Uncharacterized protein" ... 844 2.7e-84 1
UNIPROTKB|A5GFY4 - symbol:TH1L "Negative elongation facto... 843 3.4e-84 1
UNIPROTKB|A5GFY5 - symbol:TH1L "Negative elongation facto... 842 4.4e-84 1
ZFIN|ZDB-GENE-040426-720 - symbol:nelfcd "negative elonga... 804 4.7e-80 1
DICTYBASE|DDB_G0268678 - symbol:DDB_G0268678 "putative ne... 469 1.5e-44 1
>FB|FBgn0010416 [details] [associations]
symbol:TH1 "TH1" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0007070
"negative regulation of transcription from RNA polymerase II
promoter during mitosis" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0032021 "NELF complex" evidence=IPI] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR006942 Pfam:PF04858 GO:GO:0017053
GO:GO:0022008 EMBL:AE014298 GO:GO:0006351 GO:GO:0003723 EMBL:U34925
GO:GO:0034244 GO:GO:0005703 GO:GO:0005705 GO:GO:0007070
GO:GO:0032021 EMBL:AJ238377 EMBL:AJ238378 EMBL:L01790 EMBL:AY051957
PIR:T13287 RefSeq:NP_573123.1 UniGene:Dm.3007 DIP:DIP-23874N
IntAct:Q24134 MINT:MINT-937993 STRING:Q24134 PaxDb:Q24134
EnsemblMetazoa:FBtr0074305 GeneID:32607 KEGG:dme:Dmel_CG9984
UCSC:CG9984-RA CTD:32607 FlyBase:FBgn0010416 eggNOG:NOG72470
GeneTree:ENSGT00390000001799 InParanoid:Q24134 KO:K15181
OMA:CKSNFIL OrthoDB:EOG4KSN0W PhylomeDB:Q24134 GenomeRNAi:32607
NextBio:779433 Bgee:Q24134 GermOnline:CG9984 PANTHER:PTHR12144
Uniprot:Q24134
Length = 578
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 199/266 (74%), Positives = 226/266 (84%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
+NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI +LS+NYKAVAQMANL+
Sbjct: 26 DNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLL 85
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLIL GV VTEVQAMVENHLK+MILK+FDPKKADTIFTEEGETP WLTEMI+H TWRS
Sbjct: 86 AEWLILAGVKVTEVQAMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRS 145
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
LIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVLKTSI FL + D
Sbjct: 146 LIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKFLNNPD 205
Query: 210 DWQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVTP 269
D +++ECA+MVCHGQHT E KGG +KRL+QEI K A Q+ +VTP
Sbjct: 206 DVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQEIIKYALQNNQNVTP 265
Query: 270 IIMALNGAAFYPQANQALSSMISRNS 295
I MALNG+A YPQA QAL+SM++RN+
Sbjct: 266 ITMALNGSAVYPQACQALTSMLTRNT 291
>UNIPROTKB|F1NR08 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892
GO:GO:0032021 GeneTree:ENSGT00390000001799 OMA:CKSNFIL
PANTHER:PTHR12144 EMBL:AADN02019004 IPI:IPI00821543
Ensembl:ENSGALT00000039031 ArrayExpress:F1NR08 Uniprot:F1NR08
Length = 602
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 163/293 (55%), Positives = 207/293 (70%)
Query: 4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
DY + W E+ EV ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct: 24 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 83
Query: 64 AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
AGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+K
Sbjct: 84 AGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRK 143
Query: 124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
AD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+
Sbjct: 144 ADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV 203
Query: 184 STAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXE 242
STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HT E
Sbjct: 204 STACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQSMMSILAQE 263
Query: 243 SKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
+GGS V+R+AQE+ + A + GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 264 EQGGSAVRRIAQEVQRYAHEKGHDASQITLALGTAASYPRACQALGAMLSKGA 316
>UNIPROTKB|Q5ZIQ8 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892
GO:GO:0032021 eggNOG:NOG72470 GeneTree:ENSGT00390000001799
KO:K15181 PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597
OrthoDB:EOG4V170G HOGENOM:HOG000231762 EMBL:AADN02019004
EMBL:AJ720726 IPI:IPI00572055 RefSeq:NP_001006294.1
UniGene:Gga.21932 STRING:Q5ZIQ8 Ensembl:ENSGALT00000012086
GeneID:419312 KEGG:gga:419312 InParanoid:Q5ZIQ8 NextBio:20822393
Uniprot:Q5ZIQ8
Length = 583
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 163/293 (55%), Positives = 207/293 (70%)
Query: 4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
DY + W E+ EV ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct: 5 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 64
Query: 64 AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
AGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+K
Sbjct: 65 AGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRK 124
Query: 124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
AD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+
Sbjct: 125 ADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV 184
Query: 184 STAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXE 242
STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HT E
Sbjct: 185 STACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQSMMSILAQE 244
Query: 243 SKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
+GGS V+R+AQE+ + A + GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 245 EQGGSAVRRIAQEVQRYAHEKGHDASQITLALGTAASYPRACQALGAMLSKGA 297
>UNIPROTKB|Q8IXH7 [details] [associations]
symbol:NELFCD "Negative elongation factor C/D" species:9606
"Homo sapiens" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR006942 Pfam:PF04858 Reactome:REACT_116125 GO:GO:0045892
GO:GO:0016032 GO:GO:0006368 EMBL:AL109840 Reactome:REACT_1788
GO:GO:0050434 Reactome:REACT_1892 GO:GO:0032021 eggNOG:NOG72470
KO:K15181 OMA:CKSNFIL PANTHER:PTHR12144 EMBL:AJ238374 EMBL:AJ238375
EMBL:AJ238379 EMBL:AF161479 EMBL:AK001316 EMBL:AK023310
EMBL:AK023927 EMBL:AK293410 EMBL:BC014952 IPI:IPI00164949
IPI:IPI00387090 IPI:IPI00759539 RefSeq:NP_945327.2
UniGene:Hs.517148 ProteinModelPortal:Q8IXH7 DIP:DIP-34061N
IntAct:Q8IXH7 MINT:MINT-260753 STRING:Q8IXH7 PhosphoSite:Q8IXH7
DMDM:38372376 PaxDb:Q8IXH7 PRIDE:Q8IXH7 DNASU:51497
Ensembl:ENST00000344018 Ensembl:ENST00000460601 GeneID:51497
KEGG:hsa:51497 UCSC:uc002yag.3 CTD:51497 GeneCards:GC20P057556
H-InvDB:HIX0138057 HGNC:HGNC:15934 MIM:605297 neXtProt:NX_Q8IXH7
PharmGKB:PA38055 HOVERGEN:HBG052597 InParanoid:Q8IXH7
OrthoDB:EOG4V170G PhylomeDB:Q8IXH7 GenomeRNAi:51497 NextBio:55171
ArrayExpress:Q8IXH7 Bgee:Q8IXH7 Genevestigator:Q8IXH7
GermOnline:ENSG00000101158 Uniprot:Q8IXH7
Length = 590
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 164/296 (55%), Positives = 208/296 (70%)
Query: 1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
M++DY W E+ EV ECL KFST DYIMEP IF+ LKR
Sbjct: 10 MDEDYYGSAAE-WGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68
Query: 61 YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
YFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FD
Sbjct: 69 YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD 128
Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
P+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EI
Sbjct: 129 PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI 188
Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXX 239
TS+STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HT
Sbjct: 189 TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVL 248
Query: 240 XXESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 249 AQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGA 304
>MGI|MGI:1926424 [details] [associations]
symbol:Nelfcd "negative elongation factor complex member
C/D, Th1l" species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006942 Pfam:PF04858
MGI:MGI:1926424 GO:GO:0045892 GO:GO:0006351 GO:GO:0032021
eggNOG:NOG72470 GeneTree:ENSGT00390000001799 KO:K15181
PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597 OrthoDB:EOG4V170G
EMBL:AJ238741 EMBL:AJ238742 EMBL:AJ238743 EMBL:AK010360
EMBL:AK049418 EMBL:AL844534 EMBL:BC006959 EMBL:BC031747
IPI:IPI00395078 RefSeq:NP_065605.2 UniGene:Mm.271709 STRING:Q922L6
PhosphoSite:Q922L6 PaxDb:Q922L6 PRIDE:Q922L6
Ensembl:ENSMUST00000109075 GeneID:57314 KEGG:mmu:57314
UCSC:uc008ofc.1 HOGENOM:HOG000231762 ChiTaRS:TH1L NextBio:313663
Bgee:Q922L6 CleanEx:MM_TH1L Genevestigator:Q922L6
GermOnline:ENSMUSG00000016253 Uniprot:Q922L6
Length = 591
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 161/267 (60%), Positives = 202/267 (75%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 39 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 98
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 99 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 158
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 159 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 218
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + ++ E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 219 ENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDAS 278
Query: 269 PIIMALNGAAFYPQANQALSSMISRNS 295
I +AL AA YP+A QAL +M+SR +
Sbjct: 279 QITLALGTAASYPRACQALGAMLSRGA 305
>UNIPROTKB|F1PIH1 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634
GO:GO:0045892 GeneTree:ENSGT00390000001799 OMA:CKSNFIL
PANTHER:PTHR12144 EMBL:AAEX03014054 Ensembl:ENSCAFT00000019342
Uniprot:F1PIH1
Length = 564
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 160/267 (59%), Positives = 202/267 (75%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 10 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 69
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 70 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 129
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 130 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 189
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + ++ E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 190 ENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDAS 249
Query: 269 PIIMALNGAAFYPQANQALSSMISRNS 295
I +AL AA YP+A QAL +M+S+ +
Sbjct: 250 QITLALGTAASYPRACQALGAMLSKGA 276
>UNIPROTKB|F1MW69 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032021 "NELF complex" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000001799 OMA:CKSNFIL PANTHER:PTHR12144
EMBL:DAAA02036315 IPI:IPI01003013 Ensembl:ENSBTAT00000025006
Uniprot:F1MW69
Length = 600
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 160/267 (59%), Positives = 202/267 (75%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 48 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 107
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 108 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 167
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 168 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 227
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + ++ E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 228 ENLEKNLPEFAKMVCHGEHTYLFAQALMSVLAQEEQGGSAVRRIAQEVQRFAQERGHDAS 287
Query: 269 PIIMALNGAAFYPQANQALSSMISRNS 295
I +AL AA YP+A QAL +M+S+ +
Sbjct: 288 QITLALGTAASYPRACQALGAMLSKGA 314
>UNIPROTKB|A5GFY4 [details] [associations]
symbol:TH1L "Negative elongation factor D" species:9823
"Sus scrofa" [GO:0032021 "NELF complex" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634 GO:GO:0045892
GO:GO:0006351 eggNOG:NOG72470 GeneTree:ENSGT00390000001799
KO:K15181 PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597
OrthoDB:EOG4V170G HOGENOM:HOG000231762 EMBL:CR956646
RefSeq:NP_001107170.1 UniGene:Ssc.12022 STRING:A5GFY4
Ensembl:ENSSSCT00000008248 Ensembl:ENSSSCT00000034403
GeneID:100134985 KEGG:ssc:100134985 ArrayExpress:A5GFY4
Uniprot:A5GFY4
Length = 590
Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 164/296 (55%), Positives = 207/296 (69%)
Query: 1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
M++DY W E+ EV ECL KFST DYIMEP IF+ LKR
Sbjct: 10 MDEDYFGSAAE-WGDEADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68
Query: 61 YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
YFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FD
Sbjct: 69 YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD 128
Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
P+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EI
Sbjct: 129 PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI 188
Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXX 239
TS+STA QQ+EVFSRVL+TS++ L+ ++ + + E AKMVCHG+HT
Sbjct: 189 TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKHLPEFAKMVCHGEHTYLFAQAMMSVL 248
Query: 240 XXESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 249 AQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGA 304
>UNIPROTKB|A5GFY5 [details] [associations]
symbol:TH1L "Negative elongation factor D" species:9823
"Sus scrofa" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634 GO:GO:0045892
GeneTree:ENSGT00390000001799 PANTHER:PTHR12144 HOVERGEN:HBG052597
EMBL:CR956646 UniGene:Ssc.12022 STRING:A5GFY5
Ensembl:ENSSSCT00000033175 ArrayExpress:A5GFY5 Uniprot:A5GFY5
Length = 291
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 160/267 (59%), Positives = 201/267 (75%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 22 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 81
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 82 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 141
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 142 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 201
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + + E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 202 ENLEKHLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDAS 261
Query: 269 PIIMALNGAAFYPQANQALSSMISRNS 295
I +AL AA YP+A QAL +M+S+ +
Sbjct: 262 QITLALGTAASYPRACQALGAMLSKGA 288
>ZFIN|ZDB-GENE-040426-720 [details] [associations]
symbol:nelfcd "negative elongation factor complex
member C/D" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006942 Pfam:PF04858
ZFIN:ZDB-GENE-040426-720 GO:GO:0005634 GO:GO:0045892
eggNOG:NOG72470 KO:K15181 PANTHER:PTHR12144 CTD:51497
HOVERGEN:HBG052597 OrthoDB:EOG4V170G HOGENOM:HOG000231762
EMBL:BC045357 IPI:IPI00770521 RefSeq:NP_957484.1 UniGene:Dr.115420
STRING:Q7ZVZ0 GeneID:394165 KEGG:dre:394165 InParanoid:Q7ZVZ0
NextBio:20815113 ArrayExpress:Q7ZVZ0 Uniprot:Q7ZVZ0
Length = 579
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 151/263 (57%), Positives = 197/263 (74%)
Query: 34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWL 93
+V +CL+KFS+ DYIMEP +F+ LK YFQAGG+PE VI+LLS+NY AVAQ NL+AEWL
Sbjct: 31 KVQEDCLQKFSSRDYIMEPTVFNTLKSYFQAGGSPEHVIQLLSENYSAVAQTVNLLAEWL 90
Query: 94 ILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYR 153
I GV +VQ VENHLK +++K FDP+KAD+IFT EGETPAWL +MI H TWR L Y+
Sbjct: 91 IQMGVEPAQVQERVENHLKSLLIKHFDPQKADSIFTVEGETPAWLEQMIAHTTWRDLFYK 150
Query: 154 LAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD-DWQ 212
LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ + + +
Sbjct: 151 LAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATLLDGGEQNLE 210
Query: 213 SSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVTPIIM 272
++ E AKMVCHG+HT E +GGS ++R+ QE+ K A + GHD + I +
Sbjct: 211 KNLPEFAKMVCHGEHTYLFAQAMMSILAQEEQGGSAMRRIGQEVQKYAHERGHDASQITL 270
Query: 273 ALNGAAFYPQANQALSSMISRNS 295
AL AA YP+A QAL +M+S+ +
Sbjct: 271 ALGTAAAYPRACQALGAMLSKGA 293
>DICTYBASE|DDB_G0268678 [details] [associations]
symbol:DDB_G0268678 "putative negative transcription
elongation factor NELF subunit" species:44689 "Dictyostelium
discoideum" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 dictyBase:DDB_G0268678
GO:GO:0005634 GO:GO:0045892 EMBL:AAFI02000004 eggNOG:NOG72470
KO:K15181 PANTHER:PTHR12144 RefSeq:XP_646857.1
EnsemblProtists:DDB0232149 GeneID:8616540 KEGG:ddi:DDB_G0268678
InParanoid:Q55F13 OMA:ECFELIA ProtClustDB:CLSZ2431474
Uniprot:Q55F13
Length = 660
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 96/270 (35%), Positives = 152/270 (56%)
Query: 29 MENPQEVLNE-CLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMAN 87
++ P +++ E C PD IM S +K Y GG P+ VI LS++Y+ AQM N
Sbjct: 79 LKTPTDLIKEKCESSLQQPDSIMSIEASSLMKEYITVGGRPQDVITFLSESYRGYAQMCN 138
Query: 88 LVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
L+ WL + G+ ++Q NHLK++I+ FDPK ADTIFT P WL EMI W
Sbjct: 139 LLCYWLKIAGIPEEQIQTQFSNHLKEIIINKFDPKVADTIFTSSSTPPHWLDEMIVDSQW 198
Query: 148 RSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
RSLIY+L+EE+ +CLMLNF I+ ISD+G+Q EI S+STA+ VF++VL S+++ +
Sbjct: 199 RSLIYQLSEEHKNCLMLNFIIQRISDSGYQNEIASLSTASTYYRVFNKVLFDSLADLVTL 258
Query: 208 SD-DWQSSVEECAKMVCHGQHTXXXXXXXXXXXXXES-KGGSKVKRLAQEITKCAQQSGH 265
+ ++ ++E K C QHT + + +KR++QE+ A +
Sbjct: 259 DEISFRQQLDEFKKSCCQHQHTYLYAQATIQNLIKNNPQKAYNLKRISQELEIEATKKNK 318
Query: 266 DVTPIIMALNGAAFYPQANQALSSMISRNS 295
I + ++ + YP + +++S++ N+
Sbjct: 319 IAQRISLMMSNISQYPLISSSITSLLMSNT 348
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 295 268 0.00096 114 3 11 22 0.37 34
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 609 (65 KB)
Total size of DFA: 212 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.72u 0.11s 20.83t Elapsed: 00:00:01
Total cpu time: 20.72u 0.11s 20.83t Elapsed: 00:00:01
Start: Thu Aug 15 13:56:21 2013 End: Thu Aug 15 13:56:22 2013