RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15689
(295 letters)
>gnl|CDD|218295 pfam04858, TH1, TH1 protein. TH1 is a highly conserved but
uncharacterized metazoan protein. No homologue has been
identified in Caenorhabditis elegans. TH1 binds
specifically to A-Raf kinase.
Length = 582
Score = 450 bits (1158), Expect = e-157
Identities = 182/300 (60%), Positives = 213/300 (71%), Gaps = 7/300 (2%)
Query: 1 MNDDYDDEQTHRWDQDMVDV----DSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFS 56
M +DY E T WD+ D D + ENP VL ECL +FST DYIMEP IF
Sbjct: 1 MEEDY--EVTSGWDRSDGRGTAQGDDDARAEVDENPTAVLQECLRRFSTKDYIMEPSIFD 58
Query: 57 QLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMIL 116
LKRYFQAGG PE VIELLS+NY+AVAQM NL+AEWLI+ GV+ T+VQAMVENHLK +I
Sbjct: 59 DLKRYFQAGGAPETVIELLSENYRAVAQMTNLLAEWLIVTGVSPTKVQAMVENHLKTLIR 118
Query: 117 KTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGF 176
K FDP KAD IFTEEGETPAWL MI H TWR+L+Y LAEE P+CLMLNFTIKLISDAG
Sbjct: 119 KRFDPNKADAIFTEEGETPAWLDGMIRHETWRALLYSLAEENPNCLMLNFTIKLISDAGM 178
Query: 177 QREITSISTAAQQIEVFSRVLKTSISNFLES-SDDWQSSVEECAKMVCHGQHTYVYSQVL 235
Q EITS+STAAQQ EVFSRVL T I+ L S DD + ++EE A MVCHG HTYV+ Q++
Sbjct: 179 QHEITSLSTAAQQFEVFSRVLATHIAGILVSGPDDVRRAIEELASMVCHGIHTYVFGQLM 238
Query: 236 LQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
L VL E GG+ RL+QEI + A + T I +AL +A PQA AL+ M+SR +
Sbjct: 239 LAVLGQEEDGGTAAARLSQEIEEAAAKLHGAATVITLALATSAVDPQACYALADMLSRGA 298
>gnl|CDD|177383 PHA02548, 24, capsid vertex protein; Provisional.
Length = 412
Score = 30.5 bits (69), Expect = 1.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 140 EMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAG----FQREITSISTAAQQI----- 190
E++E S L E + ++L I+L+SDA F+ I+ + QI
Sbjct: 105 EVLEAGPLASSETDLEEAIQEAVVLG-KIRLVSDAASTEKFEDGDEEIAETSFQIDKWQV 163
Query: 191 EVFSRVLKTSIS 202
V SR LKTS++
Sbjct: 164 PVRSRKLKTSLT 175
>gnl|CDD|185231 PRK15331, PRK15331, chaperone protein SicA; Provisional.
Length = 165
Score = 29.3 bits (65), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 39 CLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQN-YKAV 82
C+ F PDY M QLK+ FQ + V L +N Y+ V
Sbjct: 64 CIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108
>gnl|CDD|198013 smart00945, ProQ, ProQ/FINO family. This family includes ProQ,
which is required for full activation of the
osmoprotectant transporter, ProQ, in Escherichia coli.
Length = 113
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSR-VLKTSISNFLESS 208
L+ +L E +P C N K + FQ + ++ E S+ L+ ++ + S
Sbjct: 8 LLEKLQERFPLCFGANGAPKPLKIGIFQ----DLLARLEEDEKVSKTALREALRTYTRSW 63
Query: 209 DDWQSSVE 216
++
Sbjct: 64 RYLKAVKA 71
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 28.7 bits (65), Expect = 3.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 17 MVDVDSDGGDDPMENPQEVLNECLEKFS 44
++D+ G DP+EN + ++NE LEK+S
Sbjct: 244 LIDIAPIDGSDPVENARIIINE-LEKYS 270
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor.
Length = 548
Score = 28.7 bits (64), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 95 LGGVNVTEVQAMVENHLKDMILKT---------FDPKKADTIFTEEGETPAWLTEM 141
L G+N Q+M + LKD+I + P K D + G+ P+WLT
Sbjct: 168 LDGINGPSRQSM-KPGLKDLISRARTSLAILVSVSPAKEDLLMPLSGDFPSWLTSK 222
>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal [Protein synthesis, Other].
Length = 329
Score = 28.5 bits (65), Expect = 4.5
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 17 MVDVDSDGGDDPMENPQEVLNECLEKFS 44
++D+ + G DP+E+ + + NE L+K+S
Sbjct: 242 LIDISPEDGSDPIEDYEIIRNE-LKKYS 268
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 27.9 bits (63), Expect = 6.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 79 YKAVAQMANLVAEWLILGGVNVTEVQA-MVENH 110
Y + AN A W GV +V A ++EN
Sbjct: 65 YAELNARANRYAHWAAARGVGKGDVVALLMENR 97
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 27.9 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
LI ++ EEYPD +ML F++
Sbjct: 151 LISKIREEYPDRMMLTFSV 169
>gnl|CDD|233925 TIGR02553, SipD_IpaD_SspD, type III effector protein
IpaD/SipD/SspD. These proteins are found within type
III secretion operons and have been shown to be secreted
by that system.
Length = 313
Score = 27.7 bits (61), Expect = 7.5
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 69 EQVIELLSQNYKAVAQMANLVAEWLILGG------VNVTEVQAMVE---NHLKDMILKTF 119
E V+E + Y+A + + + + +W+ G ++V +++A+++ +HL + F
Sbjct: 130 ENVVEGYTDFYQAFSDILSKMQDWISPGKDGNNVKLDVGKLKALLQQLIDHLPNKKNVLF 189
Query: 120 DPKKADTIFTEEGETPAWLTEM 141
+ +E + W E+
Sbjct: 190 PAQDGGMQLPKEADARRWRKEL 211
>gnl|CDD|223559 COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related
enzymes of inositol monophosphatase family [Carbohydrate
transport and metabolism].
Length = 260
Score = 27.3 bits (61), Expect = 8.2
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEG 132
VTE E ++ + F P I EE
Sbjct: 41 VTEADKAAERIIRARLRAAF-PD--HGILGEES 70
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 26.4 bits (59), Expect = 9.3
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 84 QMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFT 129
+M + +AE L G+ V + ++ +LK F + +
Sbjct: 39 KMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVA 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,843,935
Number of extensions: 1389086
Number of successful extensions: 1415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1414
Number of HSP's successfully gapped: 25
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)