RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15689
(295 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-09
Identities = 60/349 (17%), Positives = 109/349 (31%), Gaps = 108/349 (30%)
Query: 27 DPMENPQ--EVLNECLEKFSTPDYIMEPGI------------------FSQLKRYFQAGG 66
+P + Q +VLN CL +F Y+ I +K Y A
Sbjct: 73 EPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 67 NPEQVIELLSQN--YKAV-AQMANLVAEWLILGGVNVTEVQAMVENHLKDM--ILKTFDP 121
++ + S + ++AV A LVA I GG Q +++ +++ + +T+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVA---IFGG------QGNTDDYFEELRDLYQTYHV 182
Query: 122 KKADTIFTEEGETPAWLTEMIEHPTWRSLIY----------RLAEEYPDCLMLN---FTI 168
D I ET L+E+I ++ PD L +
Sbjct: 183 LVGDLI-KFSAET---LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 169 KLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLE-------------------SSD 209
LI + ++ V +++L + +D
Sbjct: 239 PLIG-------VIQLA----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 210 DWQSSVEECAKMV-------CHGQHTYVYSQVLLQVL--SLESKGGSK-----VKRLAQE 255
W+S K + Y + + +L SLE+ G + L QE
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 256 -----ITKCAQQSGHDVTPIIMAL-NGA-AF----YPQANQALSSMISR 293
+ K + ++L NGA PQ+ L+ + +
Sbjct: 348 QVQDYVNKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 3e-08
Identities = 42/287 (14%), Positives = 99/287 (34%), Gaps = 80/287 (27%)
Query: 28 PMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQV--IELLSQNYKAVAQM 85
P L + L + ++ G+ G+ + +++ +YK +M
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGV----------LGSGKTWVALDVC-LSYKVQCKM 180
Query: 86 ANLVAEWLILGGVNVTE-VQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEH 144
+ WL L N E V M++ +L DP +T + + + I
Sbjct: 181 DFKIF-WLNLKNCNSPETVLEMLQK-----LLYQIDPN-----WTSRSDHSSNIKLRIH- 228
Query: 145 PTWRSLIYRL--AEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVF---SRVLKT 199
+ ++ + RL ++ Y +CL L+ + + A+ F ++L T
Sbjct: 229 -SIQAELRRLLKSKPYENCL-------LVLL-----NVQN----AKAWNAFNLSCKILLT 271
Query: 200 ----SISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQE 255
+++FL ++ S++ + + + +LL+ L + + L +E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYL------DCRPQDLPRE 321
Query: 256 ITKCAQQSGHDVTPIIMALNGAA---------FYPQANQ-ALSSMIS 292
+ P +++ + + N L+++I
Sbjct: 322 VLTTN--------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Score = 41.8 bits (97), Expect = 2e-04
Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 100/301 (33%)
Query: 8 EQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRY----- 61
+ WD V+ D ++ L +Y K +
Sbjct: 339 DGLATWDNWKHVNCD---------KLTTIIESSLNVLEPAEY---------RKMFDRLSV 380
Query: 62 FQAGGN-PEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVEN-HLKDMILKTF 119
F + P ++ L+ W V ++V +V H ++ K
Sbjct: 381 FPPSAHIPTILLSLI----------------W---FDVIKSDVMVVVNKLHKYSLVEK-- 419
Query: 120 DPKKA----DTIFTEEGETPAWLTEMIEHPTWRSLI--YRLAEEY------PDC------ 161
PK++ +I+ E + H RS++ Y + + + P
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYAL--H---RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 162 ---------------------LMLNFTI---KLISDAGFQREITSISTAAQQIEVFSRVL 197
+ L+F K+ D+ SI QQ++ + +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 198 KTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257
+ + + + + + + ++T LL+ ++L ++ + + +++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYT-----DLLR-IALMAEDEAIFEEAHKQVQ 588
Query: 258 K 258
+
Sbjct: 589 R 589
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 29.9 bits (68), Expect = 0.93
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
VT VE L I + + P + EE + + ++PTW
Sbjct: 43 VTATDQKVEKMLITSIKEKY-PS--HSFIGEESVAAGEKSILTDNPTW 87
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
VTE +VE+ + + + F P EE + PTW
Sbjct: 39 VTETDHLVEDLIISELRERF-PS--HRFIAEEAAASGAKCVLTHSPTW 83
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 29.7 bits (67), Expect = 1.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
++ RL + YP + F++
Sbjct: 152 ILERLRQAYPKKRIFTFSV 170
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 29.7 bits (67), Expect = 1.4
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 150 LIYRLAEEYPDCLMLNFTI----KLISDA 174
L+ RL + YP L+ +++ +SD
Sbjct: 153 LLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 29.4 bits (66), Expect = 1.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
L+ RL+ +Y L F+I
Sbjct: 153 LMERLSVDYGKKSKLEFSI 171
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 28.8 bits (65), Expect = 2.5
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 57 QLKRYFQAGGNPEQVIELL---------SQNYKAVAQMANLVAEWLILGGVNVTEVQAMV 107
L + VI+ L + + + +A N + L G VT ++
Sbjct: 9 VLFQAATD--EQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSA- 65
Query: 108 ENHLKDMILKTFDPKKADTIF 128
+ D I+ + +
Sbjct: 66 GLVVGDNIVGKIKGRGGKNLL 86
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 28.6 bits (64), Expect = 2.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
LI L E+Y + +L+ +
Sbjct: 155 LIESLKEKYGEIPVLSCAV 173
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.7
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 18/45 (40%)
Query: 102 EVQAM--VENHLKDMILKTFDPKKADTIFTEEGETPAW-LTEMIE 143
E QA+ ++ LK + A PA + +E
Sbjct: 18 EKQALKKLQASLK-----LYADDSA----------PALAIKATME 47
>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics,
PSI-2, protein structure initiative; NMR {Shigella
flexneri}
Length = 89
Score = 26.0 bits (57), Expect = 6.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 138 LTEMIE--HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSIS 184
L E+IE P W+ + PD +L F KL ++GF E+ ++
Sbjct: 6 LNEVIELLQPAWQ--------KEPDFNLLQFLQKLAKESGFDGELADLT 46
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 27.5 bits (60), Expect = 7.4
Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 23/187 (12%)
Query: 3 DDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIME----PGIFSQL 58
DD Q W ++ D + + V NE +S PD I+ + +
Sbjct: 147 DDAHTFQQEGWHYELNDPS-----EDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPEN 201
Query: 59 KRYFQAGGNPEQVIEL----LSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHL--- 111
+GG+P+ + L + ++ +N G + ++ +L
Sbjct: 202 TYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARI--WFYGDDDPVHRLRVLSEYLDMF 259
Query: 112 ----KDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFT 167
K K + PA ++ + + L+E+ D L
Sbjct: 260 EASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLD-LQTQLA 318
Query: 168 IKLISDA 174
+ +
Sbjct: 319 LGFLDHL 325
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 26.8 bits (60), Expect = 7.9
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEG 132
VT V ++ + + F P+ + EE
Sbjct: 51 VTNVDKQIQQQFQQFLATYF-PE--HQLLAEEK 80
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 26.8 bits (60), Expect = 8.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
VT V E+ + D IL+T+ P + EEG + + W
Sbjct: 46 VTNVDKATEDFIFDTILETY-PN--HQVLGEEGH--GHDIDTSKGTVW 88
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 27.1 bits (60), Expect = 8.1
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 126 TIFTEEGETPAWLT--EMIEHPTWRSLIYRLAEEYPDCLML 164
+++ A E I+ + RL + +P L
Sbjct: 66 SVYVRSDLPGAVTATLEQID------CVRRLIDRHPGELRA 100
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF,
GTPase, VPS9, nucleotide, transport protein; HET: GNH;
2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Length = 267
Score = 27.0 bits (59), Expect = 8.6
Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 4/120 (3%)
Query: 176 FQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVL 235
F ++ F + + + W EE G YV +++
Sbjct: 38 FSNNAPDPEKDCAMVQEF----FSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLF 93
Query: 236 LQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
+V + ++ ++L Q+++ Q + I + + A + L + +
Sbjct: 94 TRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKA 153
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 26.9 bits (60), Expect = 9.4
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 141 MIEHPTWRSLIYRLAEEYPDCLML--NFTIKLISDAGFQREITSISTAAQQIEVFSRVLK 198
++ W ++ +YP+ L L + I + Q + ++ + F
Sbjct: 176 LVPLDFWLEARKQVNAKYPETLWLAESAGSGFIEELRSQGYTG--LSDSELYQAFDMTYD 233
Query: 199 TSISNFLESSDDWQSSVEECAKMVCHGQHTY 229
+ + +S+VE ++ T+
Sbjct: 234 YDVFGDFKDYWQGRSTVERYVDLLQRQDATF 264
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,464,697
Number of extensions: 258682
Number of successful extensions: 755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 27
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)