RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15689
         (295 letters)



>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding
           protein FhuD {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 29.4 bits (65), Expect = 0.44
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 6/151 (3%)

Query: 6   DDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDY------IMEPGIFSQLK 59
              +           +   G  P+   ++ L E  +  +            E  I S   
Sbjct: 76  PSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKP 135

Query: 60  RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
           R+ + G  P  +  L+   +  V    +L  E L   G+               + +   
Sbjct: 136 RFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRL 195

Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSL 150
              K   +   + +    +  ++  P W+++
Sbjct: 196 AAYKDVDVLCFDHDNSKDMDALMATPLWQAM 226


>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 28.1 bits (62), Expect = 0.70
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 229 YVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVT 268
           +VYSQV+    +   K  S    LA E+   + Q    V 
Sbjct: 47  FVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVP 86


>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 156

 Score = 26.1 bits (57), Expect = 3.3
 Identities = 4/40 (10%), Positives = 13/40 (32%)

Query: 229 YVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVT 268
           Y+Y+ +  +         +   +L   + K + +      
Sbjct: 54  YLYANICFRHHETSGSVPTDYLQLMVYVVKTSIKIPSSHN 93


>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 162

 Score = 25.8 bits (56), Expect = 5.3
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 229 YVYSQVLLQVLSLESKGGSKVKRLAQEITK 258
           Y+YSQ   +      +     K++ Q I K
Sbjct: 64  YIYSQTYFRFQEEIKENTKNDKQMVQYIYK 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,893
Number of extensions: 47794
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 5
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)