BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15690
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2
PE=2 SV=1
Length = 226
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/225 (61%), Positives = 170/225 (75%), Gaps = 4/225 (1%)
Query: 16 QKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILK 75
+K T EK AER RL ++H KR E+R NHQEVV ED RK+LP NWEARKR+AEWIL
Sbjct: 2 EKTKTAAEKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWILA 61
Query: 76 DEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKK---NPDVGFSDYQQATARQYNRLV 132
D++ R +A G+DYER+K+L ++ +A++ KKKK NPD+GFS Y+ TARQYNRLV
Sbjct: 62 DDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQYNRLV 121
Query: 133 KQMKP-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
K M D+ KYE QK++LG AFYG T L D P A++KMV DLE+QI +R+KYSR
Sbjct: 122 KSMPARDLEKYERQKEELGDAFYGGAHTTLHSRTKDTPGAINKMVTDLEQQIERRKKYSR 181
Query: 192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
RR +NDDAD+D+INERN KFNKKL+RFY EHTAEIKQNLERGTAI
Sbjct: 182 RRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226
>sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura
pseudoobscura GN=Syf2 PE=3 SV=1
Length = 226
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/221 (61%), Positives = 170/221 (76%), Gaps = 4/221 (1%)
Query: 20 TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQ 79
+ +K AER RL ++H KR E+R NHQEVV ED RK+LP NWEARKR+AEW+L D++
Sbjct: 6 SASDKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWLLADDKA 65
Query: 80 RQKALEEGEDYERVKMLNMTVAEAEKFNKKKK---NPDVGFSDYQQATARQYNRLVKQMK 136
R+ A G+DYER+K+L ++ +AE+ KKKK NPD+GFS Y+ TARQY+RLVK M
Sbjct: 66 REDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTARQYSRLVKGMP 125
Query: 137 P-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTH 195
DM KYE+QK +LG AFYG T L L D P A++KMV DL++QI +R+KYSRRR +
Sbjct: 126 ARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKYSRRRIY 185
Query: 196 NDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
NDDAD+D+INERN KFNKKL+RFYGEHTAEIKQNLERGTAI
Sbjct: 186 NDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226
>sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1
Length = 249
Score = 261 bits (667), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 6/239 (2%)
Query: 1 MSIT-LTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQL 59
M+IT +++ + AE T +K E L++ +E+HLKRNE+R+LNHQEVVEED+R +L
Sbjct: 14 MAITGISEDPASIAAED---TAAQKREEHLRKFRELHLKRNEARKLNHQEVVEEDKRLKL 70
Query: 60 PNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGF 117
P NWEA+K + EW LK EE++++ + +GEDYERVK+L ++ +AE+F +KK+NPD+GF
Sbjct: 71 PANWEAKKSRLEWELKVEEKKKECVAKGEDYERVKLLEISAEDAERFERKRKKRNPDLGF 130
Query: 118 SDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVE 177
SDY A RQY RL +Q+KPD+ KY + +++ G FY ++L G H E VDKMVE
Sbjct: 131 SDYAAAQMRQYQRLTRQIKPDLEKYAKLREESGEEFYPTSNSLLHGTHVPCKEGVDKMVE 190
Query: 178 DLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
DLEKQI KREKYSRRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 191 DLEKQIQKREKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1
Length = 240
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/225 (58%), Positives = 173/225 (76%), Gaps = 3/225 (1%)
Query: 14 AEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWI 73
A ++L Q++ A RL++ +E+HLK NE+R+LNHQEVVEED+R++LP+NWEARK + EW
Sbjct: 17 ASAEDLAAQKREA-RLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWE 75
Query: 74 LKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRL 131
LK+EE++++ G D+ER K+L ++ +AE++ KK+KNPD+GFSDY A RQY RL
Sbjct: 76 LKNEEKKRECAANGVDFERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYQRL 135
Query: 132 VKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
KQ+KPDM +YE +K+K G FY ++ G H +D+MV DLEKQI KREKYSR
Sbjct: 136 TKQIKPDMEEYEMEKEKQGELFYPTSDSLYHGTHVPSQSGIDRMVTDLEKQIEKREKYSR 195
Query: 192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
RR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 196 RRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240
>sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1
Length = 238
Score = 257 bits (656), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 170/216 (78%), Gaps = 2/216 (0%)
Query: 23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
+K ERL++ +E+H KRNE+R+LNHQEVVEED+R +LP+NWEA+K + E+ L ++++++
Sbjct: 23 QKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKKE 82
Query: 83 ALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMS 140
E GEDY+RVK+L ++ +AE++ KKK+NPD GFS Y +A RQY RL KQ+KPDM
Sbjct: 83 CAERGEDYDRVKLLEISAEDAERWERKKKKRNPDPGFSGYAEAQLRQYQRLTKQIKPDME 142
Query: 141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
YE+QK++ G F+ +++ G H +++++MV+D+EKQI KR KYSRRR +NDDAD
Sbjct: 143 NYEKQKEECGEDFHPTSNSLIYGTHVPSKDSINRMVDDVEKQIEKRAKYSRRRAYNDDAD 202
Query: 201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 203 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238
>sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2
SV=1
Length = 242
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 6/229 (2%)
Query: 14 AEQKNLTFQE----KHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRK 69
AE + L +E K +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K +
Sbjct: 14 AEARPLAAEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR 73
Query: 70 AEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQ 127
EW L++EE++++ GEDYE+VK+L ++ +AE++ KKKKNPD+GFSDY A RQ
Sbjct: 74 LEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ 133
Query: 128 YNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKRE 187
Y+RL KQ+KPDM YE Q++K G F+ ++L G H E +D+MV DLEKQI KR+
Sbjct: 134 YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRD 193
Query: 188 KYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
KYSRRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 194 KYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1
Length = 242
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 6/229 (2%)
Query: 14 AEQKNLTFQE----KHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRK 69
AE + L +E K +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K +
Sbjct: 14 AEARPLAAEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR 73
Query: 70 AEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQ 127
EW L++EE++++ GEDYE+VK+L ++ +AE++ KKKKNPD+GFSDY A RQ
Sbjct: 74 LEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ 133
Query: 128 YNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKRE 187
Y+RL KQ+KPDM YE Q++K G F+ ++L G H E +D+MV DLEKQI KR+
Sbjct: 134 YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRD 193
Query: 188 KYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
KYSRRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 194 KYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2
SV=1
Length = 249
Score = 254 bits (650), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/225 (59%), Positives = 174/225 (77%), Gaps = 3/225 (1%)
Query: 14 AEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWI 73
A ++L Q++ A RL++ +E+HLK NE+R+LNHQEVVEED+R++LP+NWEARK + EW
Sbjct: 26 ASTEDLAAQKREA-RLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWE 84
Query: 74 LKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRL 131
LK+EE++++ G DYER K+L ++ +AE++ KK+KNPD+GFSDY A RQY RL
Sbjct: 85 LKEEEKKRECAANGVDYERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYQRL 144
Query: 132 VKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
KQ+KPDM +YE +K+K G FY +++ G H +D+MV DLEKQI KREKYSR
Sbjct: 145 TKQIKPDMEEYEMEKQKQGEMFYPTSESLYHGTHIPSQSGIDRMVTDLEKQIEKREKYSR 204
Query: 192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
RR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 205 RRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1
Length = 243
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/216 (59%), Positives = 169/216 (78%), Gaps = 2/216 (0%)
Query: 23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
+K +RL++ +E+HL RNE+R+LNHQEVVEED+R +LP NWEA+K + EW LK+EE++++
Sbjct: 28 QKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKE 87
Query: 83 ALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMS 140
GEDYE+VK+L ++ +AE++ KK+KNPD+GFSDY A RQY+RL KQ+KPDM
Sbjct: 88 CAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 147
Query: 141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
YE ++K G F+ ++L G H E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct: 148 TYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDAD 207
Query: 201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 208 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
>sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2
PE=3 SV=2
Length = 233
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 148/211 (70%), Gaps = 4/211 (1%)
Query: 30 KRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGED 89
+R +++H R ++R+ NH +VVEEDRRK+LP N+EA+K + +W +K+ + R++A ++G D
Sbjct: 23 QRFRDLHKMRQKARKENHAQVVEEDRRKKLPKNFEAKKERDQWQVKELQDRKEAEDKGLD 82
Query: 90 YERVKMLNMTVAEAEKF---NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQK 146
YERV+ L M+ EK K+KKNPD GF+ Y+ T RQ+ RL + PD+ Y++ K
Sbjct: 83 YERVRSLEMSADVTEKLEQKRKRKKNPDQGFASYEDMTLRQHTRLTAALDPDLESYKKMK 142
Query: 147 KKLGP-AFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYIN 205
+ +G FY T++ G H A+D++V+D+ Q+ +RE+Y RRR ++ DA IDYIN
Sbjct: 143 ECVGGDQFYPTADTLIHGNHYPTTSAMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYIN 202
Query: 206 ERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
E+N KFNKKL+++YG++T +IK +LERGTAI
Sbjct: 203 EKNKKFNKKLDKYYGKYTEDIKDDLERGTAI 233
>sp|Q09385|SYF2_CAEEL Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis elegans GN=syf-2
PE=3 SV=3
Length = 234
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 144/211 (68%), Gaps = 4/211 (1%)
Query: 30 KRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGED 89
+R +++H R +R+ NH++VVEEDRR +LP N EA+K + +W +K+ + R+ A ++G D
Sbjct: 24 QRFRDLHKLRQRARKENHEQVVEEDRRSKLPKNHEAKKERDQWQVKELQDRKAAEDKGLD 83
Query: 90 YERVKMLNMTVAEAEKF---NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQK 146
YERV+ L M+ EK K+KKNPD GF+ Y+ T RQ+ RL + PD+ Y++ +
Sbjct: 84 YERVRSLEMSADVTEKLEQKRKRKKNPDQGFTSYEDMTLRQHTRLTAALDPDLDSYKKMR 143
Query: 147 KKLGP-AFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYIN 205
+ +G FY T++ G H A+DK+ +D+ Q+ +RE+Y RRR ++ DA IDYIN
Sbjct: 144 ECVGGEQFYPTADTLIHGNHYPTTAAMDKLTKDVHGQVKRREQYHRRRLYDPDAPIDYIN 203
Query: 206 ERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
E+N KFNKKL+++YG++T +IK +LERGTAI
Sbjct: 204 EKNKKFNKKLDKYYGKYTEDIKDDLERGTAI 234
>sp|O59733|SYF2_SCHPO Pre-mRNA-splicing factor syf2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=syf2 PE=1 SV=1
Length = 229
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 134/221 (60%), Gaps = 14/221 (6%)
Query: 28 RLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEG 87
R+++LK+I + +S N +EVV+E R ++ E R + ++E + + EEG
Sbjct: 11 RVEKLKKIREQMRKSSHENRKEVVQEHSRMRIDPALERRLERKRMEAEEELAKIETEEEG 70
Query: 88 EDYERVKMLNMTVAEAEKFN-----KKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKY 142
D+ER + + T+ E+EK++ KK+ +V FSDY ++ YNR ++ +KPD KY
Sbjct: 71 GDFERRRAWDWTIEESEKWDQRLRKKKQTIQNVAFSDYHSQASKDYNRGIRDLKPDYEKY 130
Query: 143 EEQKKKL-----GPAFYGDQKTILQGLHSDRP--EAVDKMVEDLEKQISKREKYSRRRTH 195
++ KK+ A Y + + + S++P E V+++VE ++KQ +R K ++RR
Sbjct: 131 DKDKKEEKSKSRSVALYDEAERL--DWVSNKPDKEHVERLVESIKKQDQRRLKNTKRRGT 188
Query: 196 NDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
+++ I +INERN KFN KL+RFY ++T +IK++LERGTA+
Sbjct: 189 DEEDHITFINERNRKFNLKLQRFYSKYTKDIKEDLERGTAL 229
>sp|Q5BC69|SYF2_EMENI Pre-mRNA-splicing factor syf2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf2
PE=3 SV=1
Length = 297
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 35/183 (19%)
Query: 87 GEDYERVKMLNMTVAEAEKFN-----KKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSK 141
GED+ER + + TV E+EK++ K++ DV F DY Q + Y R +++MKPD+
Sbjct: 117 GEDFERKRAWDWTVDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLREMKPDLEG 176
Query: 142 YEEQKKKL-------------------------GPAFYGDQKTILQGLHSDRPE--AVDK 174
YE +K FY TI G +P+ AVDK
Sbjct: 177 YENEKMAAIEKAAASGDLEIVETNDGEMIAVDKNGTFYSTADTI--GFTESKPDRAAVDK 234
Query: 175 MVEDLEKQISKREKYSR-RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERG 233
+V DL K R K R RR ++D D+ YINE+N +FN+KL RFY ++T EI+ + ERG
Sbjct: 235 LVADLRKAEEVRLKKRRDRRGGDEDGDVTYINEKNKQFNQKLARFYNKYTTEIRDSFERG 294
Query: 234 TAI 236
T I
Sbjct: 295 TMI 297
>sp|Q4WPM6|SYF2_ASPFU Pre-mRNA-splicing factor syf2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf2 PE=3
SV=2
Length = 300
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 34/182 (18%)
Query: 87 GEDYERVKMLNMTVAEAEKFN-----KKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSK 141
GED+ER + + T+ E+EK++ K++ DV F DY Q + Y R ++QM+PDM+
Sbjct: 121 GEDFERKRAWDWTIDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDMAA 180
Query: 142 YEEQKKKL-------------------------GPAFYGDQKTILQGLHSDRPE--AVDK 174
YE +K FY TI G ++P+ VDK
Sbjct: 181 YEREKLAAIEKAAANGDLEIVETNDGEMIAVDKNGTFYSTADTI--GFTENKPDRAGVDK 238
Query: 175 MVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGT 234
+V DL K R K R R +++ D+ YINE+N +FN+KL RFY ++T EI+ + ERGT
Sbjct: 239 LVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQFNQKLARFYNKYTTEIRDSFERGT 298
Query: 235 AI 236
I
Sbjct: 299 MI 300
>sp|Q521C0|SYF2_MAGO7 Pre-mRNA-splicing factor SYF2 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SYF2 PE=3 SV=2
Length = 291
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 42/254 (16%)
Query: 20 TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQL-PNNWEARKRK----AEWIL 74
T + AER+ R + + + S N + E RR+ P+ A R+ + IL
Sbjct: 43 TAKTAAAERMARFRALQARAKTSSDQNLKAATAESRREASDPSQLTALHRRHAIASHKIL 102
Query: 75 KDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKNPDVG-----FSDYQQATARQYN 129
K + + E G D+ER + + T E+E+++K+ K + F DY+ + Y
Sbjct: 103 KADVE-----ESGGDFERKRAWDWTAEESERWDKRVKKKEAARDNNAFQDYRHEAEKIYK 157
Query: 130 RLVKQMKPDMSKYEEQKKKL-------------------------GPAFYGDQKTILQGL 164
R +K M PDM +Y + K FY +
Sbjct: 158 RQLKNMPPDMERYAKDKMAAIDKAAAAGTLDIVETEDGELIAVDRAGTFYSTTDSTDFAK 217
Query: 165 HSDRPEAVDKMVEDLEKQ--ISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEH 222
+ EA+D++V D++K ++ +++ +R + +D D+ YIN++N +FN+KL RFY ++
Sbjct: 218 NKPDKEAIDRLVNDMKKAEDVAAKKRKARMAKNGEDDDVTYINDKNKQFNQKLARFYNKY 277
Query: 223 TAEIKQNLERGTAI 236
TAEI+++ ERGT I
Sbjct: 278 TAEIRESFERGTMI 291
>sp|Q7RZK5|SYF2_NEUCR Pre-mRNA-splicing factor syf-2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=syf-2 PE=3 SV=1
Length = 339
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 35/184 (19%)
Query: 87 GEDYERVKMLNMTVAEAEKFNKKKKN-----PDVGFSDYQQATARQYNRLVKQMK-PDMS 140
G D+ER + + TV E+E+++K+ K D F DY Q + Y R ++ M PD+
Sbjct: 157 GGDFERKRAWDWTVEESERWDKRMKKKEAHRDDTAFRDYNQQAEKSYKRQLRNMGGPDLE 216
Query: 141 KYEEQK--------------------------KKLGPAFYGDQKTILQGLHSDRPEAVDK 174
+Y +K K G F+ + H AVD+
Sbjct: 217 RYTREKLAAIEKAAAAGTLEIVETEDGEMIAIDKDG-TFFSTADSTQFAQHKPDKAAVDR 275
Query: 175 MVEDLEK--QISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLER 232
+V D+ K + S +++ R + DDAD+ YINE+N +FN+KL RFY ++TAEI+ + ER
Sbjct: 276 LVADMRKAEEASLKKRRERMANNGDDADVTYINEKNKQFNQKLSRFYNKYTAEIRDSFER 335
Query: 233 GTAI 236
GT +
Sbjct: 336 GTMV 339
>sp|Q6CFW4|SYF2_YARLI Pre-mRNA-splicing factor SYF2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SYF2 PE=3 SV=1
Length = 195
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 27/209 (12%)
Query: 40 NESRQLNHQEVVEEDR----RKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKM 95
N+S N + + EED+ K+ E ++++AE+ L ++ +A E GED++R +
Sbjct: 2 NDSSTSNRKALFEEDKDLKVNKRADALLERKQQEAEFEL----EKLQAEERGEDFDRKRA 57
Query: 96 LNMTVAEAEKFNKKKKN-----PDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKL- 149
+ TV E E++ +KK+ G D R Y + + KPD+ YE++K+
Sbjct: 58 WDWTVKETEEWKEKKERKRERESQSGVHDMSSTAQRAYEKDLASFKPDLETYEKEKETGL 117
Query: 150 --GPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINER 207
P+F H PEA+D++V L K +R K R++ DD YI+++
Sbjct: 118 HHTPSFN----------HKPTPEALDRLVNGLTKGDKQRMK-RRKQAGADDQHATYISDK 166
Query: 208 NMKFNKKLERFYGEHTAEIKQNLERGTAI 236
N +FN+KL R Y ++T EI+ N ERGTA+
Sbjct: 167 NKQFNEKLNRQYDKYTKEIRDNFERGTAL 195
>sp|Q6BVE0|SYF2_DEBHA Pre-mRNA-splicing factor SYF2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SYF2 PE=3 SV=2
Length = 231
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 119/209 (56%), Gaps = 18/209 (8%)
Query: 26 AERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPN----NWEARKRKAEWILKDEEQRQ 81
++RL +L+ + K+ ES +LN QE+ ++ ++++L + E +K AE E+++
Sbjct: 29 SDRLAKLQRLKRKKQESEKLNKQELFQDYKQQKLKSIEYKKIEQKKLNAEL----EQEKL 84
Query: 82 KALEEGEDYERVKMLNMTVAEAEKFNKKKK----NPDVGFSDYQQATARQYNRLVKQMKP 137
++E+GED+ER + + T+ + EK+ KK K N GF ++ + + YN+ + +K
Sbjct: 85 DSIEKGEDFERKQNWDWTIEDCEKWEKKTKQKGRNQKSGFQNFNKMAEQAYNKELSNLKV 144
Query: 138 DMSKYEEQKKKLGPAFYGDQKTILQGLH-SDRPEAVD--KMVEDLEKQISKREKYSRRRT 194
D Y++QK + G+Q + + L S +P A D ++V ++E+ + + RRR
Sbjct: 145 DKETYDQQKNAINKNKSGNQSQMSKILPVSSKPSAADTNRLVRNIEE--ANNRRMKRRRN 202
Query: 195 HNDDADID-YINERNMKFNKKLERFYGEH 222
+D+ D++ YIN++N +FN KL R Y E
Sbjct: 203 KDDENDVNSYINDKNKQFNLKLNRQYDES 231
>sp|Q6BNG2|DPOE_DEBHA DNA polymerase epsilon catalytic subunit A OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=POL2 PE=3 SV=2
Length = 2226
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 4 TLTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDR-RKQLPNN 62
TL + L ++A + + KH E ++R + HL +E+ H E +E R LPN+
Sbjct: 525 TLCEMLLMVQAYENGIVLPNKHTEPIERFYDGHLLESETYVGGHVESLEAGVFRSDLPND 584
Query: 63 WEARKRKAEWILKD---------EEQRQKALEEGEDYERV 93
++ + IL D E + K +E+ E+Y+ V
Sbjct: 585 FKVDPTAVDEILGDLHNALKFCIEVENNKKVEDVENYDEV 624
>sp|Q6CPI4|SYF2_KLULA Pre-mRNA-splicing factor SYF2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SYF2 PE=3 SV=1
Length = 221
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 75 KDEEQRQKAL-EEGEDYER---------VKMLNMTVAEAEKFNKKKKNP---DVGFSDYQ 121
K+ E+R ++ ++GED R +K+ N ++ E EK+ K +N D+Q
Sbjct: 70 KNSERRVYSMADDGEDKARSNKSEPEDPIKLANYSIREYEKWEAKTQNSRHNKSVMGDFQ 129
Query: 122 QATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEK 181
Y + V + D+S L D K ++ D PE V+KMV DL +
Sbjct: 130 TIAKNSYKKEVDALPKDISH------PLKGGITEDGKVQVE----DNPELVEKMVNDLNE 179
Query: 182 QISKREKYSRRRTHND-----DADIDYINERNMKFNKKL 215
+ KR Y R+ D + D +IN++N +FN KL
Sbjct: 180 RSKKR--YMVRKQKLDKQNKINLDDGFINDKNKRFNAKL 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,271,158
Number of Sequences: 539616
Number of extensions: 3768251
Number of successful extensions: 19903
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 936
Number of HSP's that attempted gapping in prelim test: 17521
Number of HSP's gapped (non-prelim): 2434
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)