Query psy15690
Match_columns 236
No_of_seqs 112 out of 201
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:00:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2609|consensus 100.0 1.8E-64 3.9E-69 432.5 20.2 216 21-236 7-228 (228)
2 PF08231 SYF2: SYF2 splicing f 100.0 4.1E-54 8.8E-59 357.1 14.9 148 84-231 1-153 (153)
3 KOG3431|consensus 41.2 21 0.00045 29.0 2.1 44 160-203 82-129 (129)
4 COG1422 Predicted membrane pro 17.0 1.5E+02 0.0033 26.0 3.2 30 23-52 72-101 (201)
5 cd08915 V_Alix_like Protein-in 14.1 3.2E+02 0.007 25.1 4.9 30 204-235 290-319 (342)
6 cd09236 V_AnPalA_UmRIM20_like 9.0 2E+02 0.0043 26.9 1.7 30 204-235 301-330 (353)
7 PF03836 RasGAP_C: RasGAP C-te 8.5 1.2E+02 0.0026 24.5 0.0 59 171-234 31-92 (142)
8 KOG3341|consensus 8.0 3E+02 0.0065 24.7 2.2 24 208-231 38-61 (249)
9 COG4097 Predicted ferric reduc 7.8 2E+02 0.0044 27.9 1.2 19 217-235 281-299 (438)
10 cd09237 V_ScBro1_like Protein- 7.8 2.6E+02 0.0056 26.0 1.9 33 202-235 301-333 (356)
No 1
>KOG2609|consensus
Probab=100.00 E-value=1.8e-64 Score=432.55 Aligned_cols=216 Identities=59% Similarity=0.915 Sum_probs=208.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhhHHHHHHHHhhCCCHHHHHHhhhhH
Q psy15690 21 FQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTV 100 (236)
Q Consensus 21 ~~~~~~~r~~rl~eLk~K~~es~~~N~kev~~E~kr~~~p~~~e~~~~r~~~~~~~~~~k~e~~~~g~D~er~k~l~~t~ 100 (236)
....++.|.+||.+|+++|+++++.||.+||+|+++.++|++|+++.++..|++.+.+.+.++++.|.|++|+++|+||+
T Consensus 7 ~~~~~~~r~kR~~~L~k~R~eARk~nheeVv~E~~r~klp~~~ea~~~r~~~E~~e~~~~~~~~a~G~D~er~r~le~s~ 86 (228)
T KOG2609|consen 7 DAKKLELRRKRVRELHKKRNEARKENHEEVVEEDRRMKLPKNWEARKERKEWELKEKEKKKEAEAQGLDYERRRLLEGSA 86 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchhhccCCchhHHHHHHHhhhhhHHHHHHHHHhccccHHHHhcccccH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh--c--c-CCCCCcchHHHHHHHHHHHhhhhcCCChHHhHHHHhhcC-CCCcCCccccccccCCCCHHHHHH
Q psy15690 101 AEAEKFNKK--K--K-NPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLG-PAFYGDQKTILQGLHSDRPEAVDK 174 (236)
Q Consensus 101 ee~E~w~kK--k--K-~~~~g~~~~~~~a~~~Y~K~~~~lk~d~e~Y~kqK~~~g-~~fy~~~~s~~~~~~kps~eavdr 174 (236)
+++++|+++ + + +++.||++|...+.++|.++++.++||++.|.++++.+| ..||++++++++++|+||+++||+
T Consensus 87 ~~ser~~k~~~kk~k~n~~~~fs~Y~~qt~~qynR~~~a~~~D~e~y~k~kE~~g~~~~~~~a~~~l~~t~k~~~~~idK 166 (228)
T KOG2609|consen 87 EDSERWEKKYDKKRKLNQDLGFSDYAAQTLRQYNRLTAADPPDLEKYEKVKERLGSEAFYPTATTLLHGTHKPDTEAIDK 166 (228)
T ss_pred HHHHHHHHhhhcccccchhhhhhHHHHHHHHHHhhhhhccchhhhhHHHHHHhhchhhhcccchhhcccCCCCCHHHHHH
Confidence 999999982 2 2 788899999999999999999999999999999999998 779999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhCCCCCCCCcccchhhHHHHHHHHHHhhhhhHHHHhhhhcccCC
Q psy15690 175 MVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236 (236)
Q Consensus 175 Lv~~L~k~~~kR~k~sRRR~~~dd~dv~YINerNk~FN~KL~R~y~kyT~EIk~nlERGTAl 236 (236)
||.+|.+|+++|.+|||||++++++|||||||||++||+||+|||+|||.|||+||||||||
T Consensus 167 l~~~L~~q~kkR~k~srRR~~n~d~~idfINerN~kFNkKl~R~ysKyT~eIK~nLERGTAl 228 (228)
T KOG2609|consen 167 LVKDLEKQIKKRYKYSRRRMYNEDADIDFINERNKKFNKKLERFYSKYTEEIKQNLERGTAL 228 (228)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccchhHHHHhHHHHHHHHHHHHhhhhHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>PF08231 SYF2: SYF2 splicing factor; InterPro: IPR013260 Proteins in this entry are involved in cell cycle progression and pre-mRNA splicing [, ].
Probab=100.00 E-value=4.1e-54 Score=357.12 Aligned_cols=148 Identities=64% Similarity=0.991 Sum_probs=141.0
Q ss_pred HhhCCCHHHHHHhhhhHHHHHHHHhh--cc-CC-CCCcchHHHHH-HHHHHHhhhhcCCChHHhHHHHhhcCCCCcCCcc
Q psy15690 84 LEEGEDYERVKMLNMTVAEAEKFNKK--KK-NP-DVGFSDYQQAT-ARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQK 158 (236)
Q Consensus 84 ~~~g~D~er~k~l~~t~ee~E~w~kK--kK-~~-~~g~~~~~~~a-~~~Y~K~~~~lk~d~e~Y~kqK~~~g~~fy~~~~ 158 (236)
++.|+|++|.++|+|||+++|+|++| +| ++ ++||++|+++| +++|+|+|++|+||++.|+++++.+|..||++++
T Consensus 1 e~~g~D~er~k~l~~t~~e~E~w~~K~~kk~~~~~~g~~~~~~~a~~~~Y~K~~~~l~~d~e~Y~~~k~~~~~~fy~~~~ 80 (153)
T PF08231_consen 1 EEKGEDYERKKLLNYTAEEAEKWEKKKKKKKKNKDFGFSDYNQDALYRQYKKRIKNLKPDMEEYEKQKEKLGEKFYRDAD 80 (153)
T ss_pred CCccccHHHHHHHHhhHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhccccccCCCc
Confidence 36899999999999999999999983 22 33 68999999999 9999999999999999999999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCcccchhhHHHHHHHHHHhhhhhHHHHhhhh
Q psy15690 159 TILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLE 231 (236)
Q Consensus 159 s~~~~~~kps~eavdrLv~~L~k~~~kR~k~sRRR~~~dd~dv~YINerNk~FN~KL~R~y~kyT~EIk~nlE 231 (236)
++++|+|+|++++||+||++|++++++|.+|||||.+++++||+|||+||++||+||+||||+||+|||+|||
T Consensus 81 ~l~~~~~~~~~e~vdrlv~~l~k~~~kR~k~sRrR~~~d~~dv~YINerNk~FN~KL~R~y~kyT~eIk~nlE 153 (153)
T PF08231_consen 81 SLVYGSHKPSPEAVDRLVNDLEKQIEKRKKFSRRRKFDDDADVDYINERNKQFNKKLERFYDKYTAEIKQNLE 153 (153)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHhHhcccccCCCcCchhhhhHHHHHHHHHHHhHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>KOG3431|consensus
Probab=41.18 E-value=21 Score=29.00 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=29.9
Q ss_pred cccccCCCCHHHHHHHHHHHHHHH-H--HHHhhhhhhC-CCCCCCCcc
Q psy15690 160 ILQGLHSDRPEAVDKMVEDLEKQI-S--KREKYSRRRT-HNDDADIDY 203 (236)
Q Consensus 160 ~~~~~~kps~eavdrLv~~L~k~~-~--kR~k~sRRR~-~~dd~dv~Y 203 (236)
.+.++||.|++.+-.|.+.+..|. . -.-+|-|||. .++|.|-||
T Consensus 82 ~gQvs~Kise~~lisiLe~is~Qt~qk~tkV~f~RRr~~~Ddddd~D~ 129 (129)
T KOG3431|consen 82 TGQVSHKISEAELISILEKISAQTNQKNTKVKFDRRRFNDDDDDDDDL 129 (129)
T ss_pred hCCccccccHHHHHHHHHHHHHhhccccceeeeeccccccCccccccC
Confidence 357789999998888888888776 2 2234777773 334455555
No 4
>COG1422 Predicted membrane protein [Function unknown]
Probab=16.97 E-value=1.5e+02 Score=26.01 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15690 23 EKHAERLKRLKEIHLKRNESRQLNHQEVVE 52 (236)
Q Consensus 23 ~~~~~r~~rl~eLk~K~~es~~~N~kev~~ 52 (236)
++|.+.+++.+|++.+..++++.|..+.++
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lk 101 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLK 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 378888888999999888888877766664
No 5
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=14.14 E-value=3.2e+02 Score=25.05 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHHHhhhhhHHHHhhhhcccC
Q psy15690 204 INERNMKFNKKLERFYGEHTAEIKQNLERGTA 235 (236)
Q Consensus 204 INerNk~FN~KL~R~y~kyT~EIk~nlERGTA 235 (236)
.+.|+ .|=++|..+|+.|. ||+.||+-|+.
T Consensus 290 ~~~r~-~~l~~L~~ay~~y~-el~~~l~eG~~ 319 (342)
T cd08915 290 LDPRE-EALQDLEASYKKYL-ELKENLNEGSK 319 (342)
T ss_pred hhHHH-HHHHHHHHHHHHHH-HHHHhHHHHHH
Confidence 34444 45689999999985 89999999973
No 6
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=8.95 E-value=2e+02 Score=26.85 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=24.5
Q ss_pred cchhhHHHHHHHHHHhhhhhHHHHhhhhcccC
Q psy15690 204 INERNMKFNKKLERFYGEHTAEIKQNLERGTA 235 (236)
Q Consensus 204 INerNk~FN~KL~R~y~kyT~EIk~nlERGTA 235 (236)
..+|+.. =++|..+|.+|. ||..||+-|+.
T Consensus 301 ~~~re~~-lq~L~~ay~~y~-el~~nl~eG~k 330 (353)
T cd09236 301 TKERERA-LQSLDLAYFKYK-EIVSNLDEGRK 330 (353)
T ss_pred HHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5677654 578999999995 89999999973
No 7
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=8.50 E-value=1.2e+02 Score=24.55 Aligned_cols=59 Identities=19% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhCCC-C--CCCCcccchhhHHHHHHHHHHhhhhhHHHHhhhhccc
Q psy15690 171 AVDKMVEDLEKQISKREKYSRRRTHN-D--DADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGT 234 (236)
Q Consensus 171 avdrLv~~L~k~~~kR~k~sRRR~~~-d--d~dv~YINerNk~FN~KL~R~y~kyT~EIk~nlERGT 234 (236)
.++.++.||......| .+|... . ..-..=|+++|..+...|+ +|+.|-..+..||-.|+
T Consensus 31 lln~IA~dI~~~~~~r----~~r~~El~~l~~tl~~L~~k~~~l~~ql~-~Y~~Yi~~~l~~~~~~~ 92 (142)
T PF03836_consen 31 LLNDIAKDIRNKRRYR----EQRKQELEKLRQTLKNLNEKNKFLEEQLD-SYNEYIKNCLSNLQSKK 92 (142)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Confidence 4555555555544443 222211 1 1334679999999999996 78999998888886653
No 8
>KOG3341|consensus
Probab=7.96 E-value=3e+02 Score=24.70 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhhhhhHHHHhhhh
Q psy15690 208 NMKFNKKLERFYGEHTAEIKQNLE 231 (236)
Q Consensus 208 Nk~FN~KL~R~y~kyT~EIk~nlE 231 (236)
=.+|-..|+-|=.+|..|||+|=+
T Consensus 38 l~~f~~~LeeFA~kH~~ei~knsq 61 (249)
T KOG3341|consen 38 LEVFQEALEEFARKHKTEIRKNSQ 61 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHH
Confidence 357899999999999999999843
No 9
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=7.84 E-value=2e+02 Score=27.91 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=16.7
Q ss_pred HHhhhhhHHHHhhhhcccC
Q psy15690 217 RFYGEHTAEIKQNLERGTA 235 (236)
Q Consensus 217 R~y~kyT~EIk~nlERGTA 235 (236)
..-|.||+-|++||+-||-
T Consensus 281 K~LGD~Tk~l~dnLk~G~k 299 (438)
T COG4097 281 KALGDFTKTLKDNLKVGTK 299 (438)
T ss_pred hhhhhhhHHHHHhccCCce
Confidence 4679999999999999984
No 10
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=7.78 E-value=2.6e+02 Score=26.01 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=25.8
Q ss_pred cccchhhHHHHHHHHHHhhhhhHHHHhhhhcccC
Q psy15690 202 DYINERNMKFNKKLERFYGEHTAEIKQNLERGTA 235 (236)
Q Consensus 202 ~YINerNk~FN~KL~R~y~kyT~EIk~nlERGTA 235 (236)
+.+...-..|=++|..+|++|. ||..||+-|+.
T Consensus 301 ~~~~~~R~~~l~~l~~ay~~y~-el~~~l~~G~~ 333 (356)
T cd09237 301 KSKQKLRKEFFEKLKKAYNSFK-KFSAGLPKGLE 333 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHhChHHHHH
Confidence 3455555567789999999974 89999999973
Done!