Query psy15690
Match_columns 236
No_of_seqs 112 out of 201
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:00:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 35.2 34 0.0012 19.2 2.6 17 24-40 9-25 (27)
2 1imu_A Hypothetical protein HI 12.4 2.4E+02 0.0082 20.3 4.1 24 166-189 68-91 (107)
3 2ap3_A Conserved hypothetical 9.5 1.3E+02 0.0045 25.0 1.9 20 204-227 167-186 (199)
4 3csx_A Putative uncharacterize 8.1 3.2E+02 0.011 19.5 3.2 37 23-65 15-51 (81)
5 3fxd_A Protein ICMQ; helix bun 8.1 1.7E+02 0.0058 19.6 1.6 16 217-232 33-48 (57)
6 2xze_Q Charged multivesicular 8.0 2.1E+02 0.0072 17.8 1.9 13 24-36 27-39 (40)
7 4g3b_A Alpha4F3D; alpha helix, 7.8 3.4E+02 0.011 14.9 2.6 16 24-39 9-24 (26)
8 3v2c_Y Ribosome-associated inh 7.2 3.2E+02 0.011 20.3 3.1 24 166-189 68-91 (119)
9 4fyl_A Ribosome hibernation pr 6.8 3.7E+02 0.013 18.8 3.1 23 165-187 67-89 (95)
10 2yy0_A C-MYC-binding protein; 5.8 6.1E+02 0.021 16.2 3.5 26 21-46 17-42 (53)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=35.21 E-value=34 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy15690 24 KHAERLKRLKEIHLKRN 40 (236)
Q Consensus 24 ~~~~r~~rl~eLk~K~~ 40 (236)
.+++.++||+.|+.|+.
T Consensus 9 eledlqerlrklrkklr 25 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46788889999988763
No 2
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=12.43 E-value=2.4e+02 Score=20.34 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q psy15690 166 SDRPEAVDKMVEDLEKQISKREKY 189 (236)
Q Consensus 166 kps~eavdrLv~~L~k~~~kR~k~ 189 (236)
.+--.|||.++..|+.|..+....
T Consensus 68 ~d~y~AiD~a~dkLerqLrk~k~K 91 (107)
T 1imu_A 68 DDMYKAINEVEEKLERQLNKLQHK 91 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999887553
No 3
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=9.46 E-value=1.3e+02 Score=25.02 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHhhhhhHHHH
Q psy15690 204 INERNMKFNKKLERFYGEHTAEIK 227 (236)
Q Consensus 204 INerNk~FN~KL~R~y~kyT~EIk 227 (236)
||+-+..|| ..|++||.+.-
T Consensus 167 vN~~y~~~~----~~FN~yTk~yN 186 (199)
T 2ap3_A 167 IEQNYKKLK----EVSDKYTKVLN 186 (199)
T ss_dssp HHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHH
Confidence 455566666 66777777654
No 4
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=8.14 E-value=3.2e+02 Score=19.49 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHH
Q psy15690 23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEA 65 (236)
Q Consensus 23 ~~~~~r~~rl~eLk~K~~es~~~N~kev~~E~kr~~~p~~~e~ 65 (236)
+...+...+++.|+.+..+..-.-|. ++++ +|.+|+.
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHD-LaEd-----LP~~w~~ 51 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHD-LAEG-----LPTDYEN 51 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHH-HHHH-----TTTTGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHcc-----chhhHHH
Confidence 45677888999999988876655444 4443 8988855
No 5
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=8.07 E-value=1.7e+02 Score=19.59 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=12.5
Q ss_pred HHhhhhhHHHHhhhhc
Q psy15690 217 RFYGEHTAEIKQNLER 232 (236)
Q Consensus 217 R~y~kyT~EIk~nlER 232 (236)
|--||.-.|||+||-+
T Consensus 33 RvIGKnL~eIRd~F~~ 48 (57)
T 3fxd_A 33 RVIGKKLIAIRDRFLK 48 (57)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 6678888888888854
No 6
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=8.04 E-value=2.1e+02 Score=17.77 Aligned_cols=13 Identities=15% Similarity=0.159 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q psy15690 24 KHAERLKRLKEIH 36 (236)
Q Consensus 24 ~~~~r~~rl~eLk 36 (236)
.+++.+.||..||
T Consensus 27 di~~MqsRLaALR 39 (40)
T 2xze_Q 27 ALEAMQSRLATLR 39 (40)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 4677888998886
No 7
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=7.85 E-value=3.4e+02 Score=14.93 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHH
Q psy15690 24 KHAERLKRLKEIHLKR 39 (236)
Q Consensus 24 ~~~~r~~rl~eLk~K~ 39 (236)
.+++.++||+..+.|+
T Consensus 9 eled~qerlrk~rkkl 24 (26)
T 4g3b_A 9 ELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3677788888777765
No 8
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=7.19 E-value=3.2e+02 Score=20.26 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q psy15690 166 SDRPEAVDKMVEDLEKQISKREKY 189 (236)
Q Consensus 166 kps~eavdrLv~~L~k~~~kR~k~ 189 (236)
.+--.|||.++..|..|..+....
T Consensus 68 ~D~yaAID~a~dkLerQLrK~K~K 91 (119)
T 3v2c_Y 68 EDMYTAINELINKLERQLNKLQHK 91 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999887553
No 9
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=6.77 E-value=3.7e+02 Score=18.84 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy15690 165 HSDRPEAVDKMVEDLEKQISKRE 187 (236)
Q Consensus 165 ~kps~eavdrLv~~L~k~~~kR~ 187 (236)
+.+--.+||.++..|+.|..+.+
T Consensus 67 ~~d~y~AiD~a~dklerQlrk~K 89 (95)
T 4fyl_A 67 DENMYAAIDSLVDKLVRQLNKHK 89 (95)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445789999999999998764
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=5.80 E-value=6.1e+02 Score=16.24 Aligned_cols=26 Identities=15% Similarity=-0.060 Sum_probs=16.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15690 21 FQEKHAERLKRLKEIHLKRNESRQLN 46 (236)
Q Consensus 21 ~~~~~~~r~~rl~eLk~K~~es~~~N 46 (236)
...+.+.....+.+|+.|..+....+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777766555444
Done!