Query psy15690
Match_columns 236
No_of_seqs 112 out of 201
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 19:00:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15690.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15690hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ez9a1 c.31.1.3 (A:183-365) P 6.1 2E+02 0.015 20.6 3.5 20 163-182 11-30 (183)
2 d1chma1 c.55.2.1 (A:2-156) Cre 5.7 1.5E+02 0.011 20.4 2.3 31 9-40 5-35 (155)
3 d1l4sa_ d.204.1.1 (A:) Ribosom 5.3 2.7E+02 0.02 18.2 3.5 23 166-188 67-89 (112)
4 d1st6a3 a.24.9.1 (A:253-371) V 5.0 2.8E+02 0.02 19.3 3.4 19 24-42 100-118 (119)
5 d3bc8a1 c.67.1.9 (A:23-467) Se 4.7 3E+02 0.022 21.8 4.0 22 164-185 417-438 (445)
6 d1st6a4 a.24.9.1 (A:372-488) V 4.7 3E+02 0.022 19.1 3.4 20 24-43 91-110 (117)
7 d1q6za1 c.31.1.3 (A:182-341) B 4.7 2.2E+02 0.016 19.5 2.8 18 165-182 2-19 (160)
8 d1v72a1 c.67.1.1 (A:6-350) Phe 4.7 1.8E+02 0.013 21.3 2.3 17 165-181 327-343 (345)
9 d2hg7a1 d.186.2.1 (A:1-60) Pha 4.1 78 0.0057 19.8 -0.3 12 197-208 24-35 (60)
10 d1svva_ c.67.1.1 (A:) Low-spec 3.9 2.2E+02 0.016 20.2 2.3 17 165-181 323-339 (340)
No 1
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=6.10 E-value=2e+02 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=15.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy15690 163 GLHSDRPEAVDKMVEDLEKQ 182 (236)
Q Consensus 163 ~~~kps~eavdrLv~~L~k~ 182 (236)
....|+++.|+++|+-|.+.
T Consensus 11 ~~p~pd~~~i~~~~~~L~~A 30 (183)
T d2ez9a1 11 LLPEPDVQAVTRLTQTLLAA 30 (183)
T ss_dssp CCCBCCHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhC
Confidence 34568899999999998764
No 2
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=5.67 E-value=1.5e+02 Score=20.38 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=18.1
Q ss_pred ccCcchhhcccchHhhHHHHHHHHHHHHHHHH
Q psy15690 9 TLDMEAEQKNLTFQEKHAERLKRLKEIHLKRN 40 (236)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~~rl~eLk~K~~ 40 (236)
|++|.-|+...+.- ..+++..|+..|+..|.
T Consensus 5 ~~~~~~~~k~~~~f-s~~E~~~Rl~klr~~m~ 35 (155)
T d1chma1 5 TLRIRNGDKVRSTF-SAQEYANRQARLRAHLA 35 (155)
T ss_dssp EECCCCSCCCCCSS-CHHHHHHHHHHHHHHHH
T ss_pred ceecCCCccCCCCC-CHHHHHHHHHHHHHHHH
Confidence 35565555544321 34567777777777663
No 3
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=5.28 E-value=2.7e+02 Score=18.22 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q psy15690 166 SDRPEAVDKMVEDLEKQISKREK 188 (236)
Q Consensus 166 kps~eavdrLv~~L~k~~~kR~k 188 (236)
.+--.+||.++..|..|..+.+.
T Consensus 67 ~d~y~Aid~a~~klerQLrk~K~ 89 (112)
T d1l4sa_ 67 EDMYTAINELINKLERQLNKLQH 89 (112)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33347899999999999987644
No 4
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.03 E-value=2.8e+02 Score=19.29 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy15690 24 KHAERLKRLKEIHLKRNES 42 (236)
Q Consensus 24 ~~~~r~~rl~eLk~K~~es 42 (236)
-......+|.+|+.+++++
T Consensus 100 lA~qi~~kL~~L~~~v~~A 118 (119)
T d1st6a3 100 KAQQVSQGLDLLTAKVENA 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567779999999998876
No 5
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.71 E-value=3e+02 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy15690 164 LHSDRPEAVDKMVEDLEKQISK 185 (236)
Q Consensus 164 ~~kps~eavdrLv~~L~k~~~k 185 (236)
....+++.||++|+.|++-.+.
T Consensus 417 ~~~~T~eDID~~v~~L~kilk~ 438 (445)
T d3bc8a1 417 AIGMKMQDVDLFIKRLDKCLNI 438 (445)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 3457889999999999988765
No 6
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.70 E-value=3e+02 Score=19.05 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15690 24 KHAERLKRLKEIHLKRNESR 43 (236)
Q Consensus 24 ~~~~r~~rl~eLk~K~~es~ 43 (236)
-......+|.+|+.+++++-
T Consensus 91 lA~qi~~kL~~L~~~v~~Av 110 (117)
T d1st6a4 91 LAKQIATSLQNLQSKTNRAV 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788999998887653
No 7
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=4.70 E-value=2.2e+02 Score=19.46 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15690 165 HSDRPEAVDKMVEDLEKQ 182 (236)
Q Consensus 165 ~kps~eavdrLv~~L~k~ 182 (236)
.+++++.|+++|+-|.+.
T Consensus 2 ~~~~~~~ld~~~~~l~~A 19 (160)
T d1q6za1 2 VRLNDQDLDILVKALNSA 19 (160)
T ss_dssp CCCCHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHhC
Confidence 578999999999888765
No 8
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}
Probab=4.68 E-value=1.8e+02 Score=21.26 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15690 165 HSDRPEAVDKMVEDLEK 181 (236)
Q Consensus 165 ~kps~eavdrLv~~L~k 181 (236)
..-|+|.||++++.|++
T Consensus 327 ~~~T~edid~~le~lr~ 343 (345)
T d1v72a1 327 FATTAEDVDHLLNQVRL 343 (345)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34579999999999875
No 9
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=4.08 E-value=78 Score=19.77 Aligned_cols=12 Identities=33% Similarity=0.604 Sum_probs=8.9
Q ss_pred CCCCCcccchhh
Q psy15690 197 DDADIDYINERN 208 (236)
Q Consensus 197 dd~dv~YINerN 208 (236)
+|+|..||++=|
T Consensus 24 dDGdG~yI~eW~ 35 (60)
T d2hg7a1 24 NDGNGSYIEKWN 35 (60)
T ss_dssp ECSSCEEEEEEC
T ss_pred eCCCchhhheee
Confidence 467788998755
No 10
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}
Probab=3.94 E-value=2.2e+02 Score=20.20 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15690 165 HSDRPEAVDKMVEDLEK 181 (236)
Q Consensus 165 ~kps~eavdrLv~~L~k 181 (236)
.--|++.||++++.|++
T Consensus 323 ~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 323 WATEEKECHRFVEVLKR 339 (340)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 34589999999999864
Done!