RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15690
         (236 letters)



>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
           [TaxId: 274]}
          Length = 109

 Score = 25.8 bits (56), Expect = 2.7
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 88  EDYERVKMLNMTVAEAEKFNKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKK 147
           E ++ + +    V  AE   K +K     + D      +Q          ++ + E+   
Sbjct: 5   EAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQ----SSAQITELYRPEDLVG 60

Query: 148 KLGPAFYGDQKTILQGLHS 166
           +L           + G  S
Sbjct: 61  RLVVCAVNLGAKRVAGFLS 79


>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 309

 Score = 26.2 bits (57), Expect = 3.7
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 76  DEEQRQKALEEGEDYERVKMLN 97
           D E +    + G  Y R +M N
Sbjct: 269 DYECKVVTDDIGASYYRPEMPN 290


>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 553

 Score = 25.6 bits (54), Expect = 6.3
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 15  EQKNLTFQ--EKHAERLKRLKEIHLKRNES 42
           E+  LT     +  E LK ++E   +  ++
Sbjct: 489 ERNPLTPASEPRFYEILKVMQEAADRHTQT 518


>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 485

 Score = 25.5 bits (54), Expect = 6.9
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 15  EQKNLTFQ--EKHAERLKRLKEIHLKRNE 41
           E  NL         E L+ LK++ L + +
Sbjct: 419 ENYNLLGGVAGATPEVLQALKQLQLLKAQ 447


>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
           {Escherichia coli [TaxId: 562]}
          Length = 112

 Score = 24.1 bits (52), Expect = 9.7
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 165 HSDRPEAVDKMVEDLEKQISK-REKYSRRRTHNDDADIDYINE 206
           H D   A+++++  LE+Q++K + K   RR      D +++ E
Sbjct: 66  HEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEE 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 864,850
Number of extensions: 41473
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 51
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)