BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15691
(620 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1 PE=1
SV=2
Length = 578
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/561 (73%), Positives = 475/561 (84%), Gaps = 5/561 (0%)
Query: 22 SDGGDDPME----NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQ 77
+ G +P E NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI +LS+
Sbjct: 14 AKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSE 73
Query: 78 NYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAW 137
NYKAVAQMANL+AEWLIL GV VTEVQAMVENHLK+MILK+FDPKKADTIFTEEGETP W
Sbjct: 74 NYKAVAQMANLLAEWLILAGVKVTEVQAMVENHLKEMILKSFDPKKADTIFTEEGETPDW 133
Query: 138 LTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVL 197
LTEMI+H TWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVL
Sbjct: 134 LTEMIDHYTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVL 193
Query: 198 KTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257
KTSI FL + DD +++ECA+MVCHGQHTYVYSQVL+QVLS E KGG +KRL+QEI
Sbjct: 194 KTSIVKFLNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQEII 253
Query: 258 KCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPID 317
K A Q+ +VTPI MALNG+A YPQA QAL+SM++RN+LNPADITVLFR YS DPPPID
Sbjct: 254 KYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVLFRNYSGSDPPPID 313
Query: 318 LIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKK-TKQKSFNKDDL 376
LIR PQFLELL D+LF+ GVK+NPEHKPKY++LLAYAS+V + K+ ++ NK++L
Sbjct: 314 LIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYASAVIDQPAKKRPMTERMLNKEEL 373
Query: 377 KTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLC 436
K+TIQAIEK H+ICN + S ELIAE+ TL++CI+YPVV VGVIRW+E V EPSYFKL
Sbjct: 374 KSTIQAIEKAHTICNVDQGSTELIAELQTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLS 433
Query: 437 TEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLL 496
T+ PTHLA+LDEV H L ++L L I LFESKQDELEILVQLEM+KM+LDRMVNLL
Sbjct: 434 TDSCPTHLAVLDEVAAVHPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLL 493
Query: 497 CRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITG 556
RGCVVPV++Y+KQC DTDISLIRYFVTEVLE IT PY+PEFVQLFLP+VEN+EITG
Sbjct: 494 TRGCVVPVLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEEITG 553
Query: 557 TMRGDGENDPVSEFIVQTLEH 577
TMRG+G+NDPVSEFIV H
Sbjct: 554 TMRGEGDNDPVSEFIVHCKAH 574
>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2
Length = 591
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/581 (59%), Positives = 457/581 (78%), Gaps = 16/581 (2%)
Query: 1 MNDDYDDEQTHRWDQDMVDVDSDGG----DDPME--NPQEVLNECLEKFSTPDYIMEPGI 54
M +DY + W ++ +DGG DD E + EV ECL KFST DYIMEP I
Sbjct: 10 MGEDYFGNAS-EWGEE-----ADGGQHQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSI 63
Query: 55 FSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDM 114
F+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +
Sbjct: 64 FNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSL 123
Query: 115 ILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDA 174
++K FDP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDA
Sbjct: 124 LIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDA 183
Query: 175 GFQREITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQ 233
G+Q EITS+STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HTY+++Q
Sbjct: 184 GYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQ 243
Query: 234 VLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293
++ VL+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+SR
Sbjct: 244 AMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSR 303
Query: 294 NSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAY 353
+LNPADITVLF++++S DPPP++LIR+P FL+L SLFKPG K+N +HK KYI++LAY
Sbjct: 304 GALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAY 363
Query: 354 ASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRY 412
A+SV V T KK K+ S KD+LK+T +AIE VH++ CN +K ++EL+AE++TL+ CIR+
Sbjct: 364 AASV--VETWKKNKRVSIGKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRF 421
Query: 413 PVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESK 472
PVV++GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++
Sbjct: 422 PVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETE 481
Query: 473 QDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEA 532
+L+++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+
Sbjct: 482 HSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDV 541
Query: 533 ITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
I PPYT +FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct: 542 IAPPYTSDFVQLFLPILENDSIAGTIKAEGEHDPVTEFIAH 582
>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2
Length = 590
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/576 (58%), Positives = 456/576 (79%), Gaps = 7/576 (1%)
Query: 1 MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
M++DY D+ D + D G+ E+ EV ECL KFST DYIMEP IF+ LK
Sbjct: 10 MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67
Query: 60 RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
RYFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K F
Sbjct: 68 RYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHF 127
Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQRE 179
DP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q E
Sbjct: 128 DPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGE 187
Query: 180 ITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQV 238
ITS+STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HTY+++Q ++ V
Sbjct: 188 ITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSV 247
Query: 239 LSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNP 298
L+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +LNP
Sbjct: 248 LAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNP 307
Query: 299 ADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVY 358
ADITVLF++++S DPPP++LIR+P FL+L SLFKPG ++N +HK KYI++LAYA+SV
Sbjct: 308 ADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASV- 366
Query: 359 EVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYPVVSV 417
V T KK K+ S NKD+LK+T +A+E VH++ CN +K ++EL+AE++TL+ CIR+PVV++
Sbjct: 367 -VETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAM 425
Query: 418 GVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELE 477
GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++ +L+
Sbjct: 426 GVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLD 485
Query: 478 ILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 537
++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPY
Sbjct: 486 VMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPY 545
Query: 538 TPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
T +FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct: 546 TSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAH 581
>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1
Length = 590
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/576 (58%), Positives = 456/576 (79%), Gaps = 7/576 (1%)
Query: 1 MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
M++DY D+ D + D G+ E+ EV ECL KFST DYIMEP IF+ LK
Sbjct: 10 MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67
Query: 60 RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
RYFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K F
Sbjct: 68 RYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHF 127
Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQRE 179
DP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q E
Sbjct: 128 DPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGE 187
Query: 180 ITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQV 238
ITS+STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HTY+++Q ++ V
Sbjct: 188 ITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSV 247
Query: 239 LSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNP 298
L+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +LNP
Sbjct: 248 LAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNP 307
Query: 299 ADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVY 358
ADITVLF++++S DPPP++LIR+P FL+L SLFKPG ++N +HK KYI++LAYA+SV
Sbjct: 308 ADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASV- 366
Query: 359 EVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYPVVSV 417
V T KK K+ S NKD+LK+T +A+E VH++ CN +K ++EL+AE++TL+ CIR+PVV++
Sbjct: 367 -VETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAM 425
Query: 418 GVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELE 477
GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++ +L+
Sbjct: 426 GVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLD 485
Query: 478 ILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 537
++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPY
Sbjct: 486 VMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPY 545
Query: 538 TPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
T +FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct: 546 TSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAH 581
>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1
Length = 590
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/580 (58%), Positives = 456/580 (78%), Gaps = 15/580 (2%)
Query: 1 MNDDYDDEQTHRWDQDMVDVDSDGG---DD--PMENPQEVLNECLEKFSTPDYIMEPGIF 55
M++DY D+ +DGG DD E+ EV ECL KFST DYIMEP IF
Sbjct: 10 MDEDYFGSAAEWGDE------ADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIF 63
Query: 56 SQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMI 115
+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK ++
Sbjct: 64 NTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLL 123
Query: 116 LKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAG 175
+K FDP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG
Sbjct: 124 IKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAG 183
Query: 176 FQREITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQV 234
+Q EITS+STA QQ+EVFSRVL+TS++ L+ ++ + + E AKMVCHG+HTY+++Q
Sbjct: 184 YQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKHLPEFAKMVCHGEHTYLFAQA 243
Query: 235 LLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRN 294
++ VL+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+
Sbjct: 244 MMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKG 303
Query: 295 SLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYA 354
+LNPADITVLF++++S DPPP++LIR+P FL+L SLFKPG ++N +HK KYI++LAYA
Sbjct: 304 ALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYA 363
Query: 355 SSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYP 413
+SV V T KK K+ S NKD+LK+T +A+E VH++ CN +K ++EL+AE++TL+ CIR+P
Sbjct: 364 ASV--VETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFP 421
Query: 414 VVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQ 473
VV++GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++
Sbjct: 422 VVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEH 481
Query: 474 DELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAI 533
+L+++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I
Sbjct: 482 SQLDVMEQLELKKTLLDRMVHLLSRGHVLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVI 541
Query: 534 TPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
PPYT +FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct: 542 APPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAH 581
>sp|Q9KPV6|UPPS_VIBCH Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=uppS PE=3 SV=2
Length = 250
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 36/171 (21%)
Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS 240
++ + I +R+ +++ F SS++W+ EE V ++ + VLS
Sbjct: 39 NGVAAVRKTISTSARLGIKAVTLFAFSSENWRRPEEEVG----------VLMELFMTVLS 88
Query: 241 LESKG-----------GSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYP------QA 283
E K G K + + TK AQ + M +N AA Y QA
Sbjct: 89 TEIKKLHKNNLRLRVIGDKSRFSERLQTKIAQAEQLTASNTGMVVNIAANYGGQWDILQA 148
Query: 284 NQALSSMISRNSLNPADI--TVLFRLYSSPDPPPIDLI-------RIPQFL 325
QAL+ +++ L P+DI V + + D P +DL+ RI F+
Sbjct: 149 TQALAEKVTQGELQPSDIDEDVFKQHLTMADLPDVDLLIRTSGECRISNFM 199
>sp|Q7NQ65|GSHB_CHRVO Glutathione synthetase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=gshB PE=3 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 81 AVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTE 140
A+ L++ LI G ++A V H +D+ILK D D+IF + + P L+
Sbjct: 126 AILHFPELISPTLISG--EAHRLRAFVNQH-QDVILKPLDSMGGDSIFRVKPDDPN-LSV 181
Query: 141 MIEHPTWRSLIYRLAEEY 158
+IE TWR +A+ Y
Sbjct: 182 IIETITWRGKRTVMAQRY 199
>sp|A8GJW6|RLMG_SERP5 Ribosomal RNA large subunit methyltransferase G OS=Serratia
proteamaculans (strain 568) GN=rlmG PE=3 SV=1
Length = 379
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 273 ALNGAAFYPQANQALSSMISR-----NSLNPADITVLFRLYSSPDPPPIDLIRIPQFLEL 327
AL+ Y ++ +S + +R N L+P +T+L L P P + LIRIP+ L L
Sbjct: 62 ALHSHQPYSISDSYMSQLATRHNLKLNELDPQQVTLLDTLAELPASPAVVLIRIPKALAL 121
Query: 328 LTDSL 332
L L
Sbjct: 122 LEQQL 126
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic
OS=Pisum sativum PE=1 SV=2
Length = 587
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLA 155
GGV V +V A E L+D L+ D K A EEG P T ++ + I
Sbjct: 419 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKL 478
Query: 156 EEYPDCLMLNFTIK--------LISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
E+ + L + K + +AG + E+ + EV + + N +ES
Sbjct: 479 EDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVES 538
Query: 208 SDDWQSSVEECA 219
+ V CA
Sbjct: 539 GVIDPAKVTRCA 550
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic
(Fragment) OS=Triticum aestivum PE=1 SV=1
Length = 543
Score = 32.7 bits (73), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLA 155
GGV V +V A E L+D L+ D K A EEG P + T+ I
Sbjct: 374 GGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETI 433
Query: 156 EEYPDCLMLNFTIK--------LISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
E++ + L + K + ++AG + E+ + E+ + N +ES
Sbjct: 434 EDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIES 493
Query: 208 SDDWQSSVEECA 219
+ V CA
Sbjct: 494 GVIDPAKVTRCA 505
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,862,975
Number of Sequences: 539616
Number of extensions: 9548987
Number of successful extensions: 26227
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 26198
Number of HSP's gapped (non-prelim): 29
length of query: 620
length of database: 191,569,459
effective HSP length: 124
effective length of query: 496
effective length of database: 124,657,075
effective search space: 61829909200
effective search space used: 61829909200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)