Query psy15691
Match_columns 620
No_of_seqs 69 out of 71
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 19:01:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04858 TH1: TH1 protein; In 100.0 4E-179 9E-184 1476.3 58.6 575 1-578 1-581 (584)
2 PF10508 Proteasom_PSMB: Prote 73.6 1.7E+02 0.0037 33.4 22.3 162 34-229 60-236 (503)
3 PF14964 DUF4507: Domain of un 67.1 65 0.0014 35.7 11.8 67 485-551 109-192 (362)
4 PF12717 Cnd1: non-SMC mitotic 59.1 74 0.0016 30.9 9.6 97 443-550 8-108 (178)
5 KOG1058|consensus 51.3 3.6E+02 0.0077 33.1 14.6 222 208-470 219-443 (948)
6 PF05621 TniB: Bacterial TniB 49.8 78 0.0017 34.2 8.6 119 322-462 110-238 (302)
7 PF09384 UTP15_C: UTP15 C term 46.3 61 0.0013 31.1 6.5 59 419-481 79-137 (148)
8 PF12926 MOZART2: Mitotic-spin 38.7 46 0.00099 29.8 4.0 40 38-77 29-68 (88)
9 PF10136 SpecificRecomb: Site- 34.0 8.4E+02 0.018 29.3 14.4 134 69-207 32-203 (643)
10 smart00543 MIF4G Middle domain 32.5 4.3E+02 0.0093 25.0 10.1 120 439-578 51-174 (200)
11 PF10397 ADSL_C: Adenylosuccin 30.5 60 0.0013 27.8 3.4 43 227-269 1-43 (81)
12 PF14863 Alkyl_sulf_dimr: Alky 30.5 2.4E+02 0.0051 27.2 7.8 59 58-116 60-119 (141)
13 PF07035 Mic1: Colon cancer-as 28.9 1.5E+02 0.0032 29.4 6.2 56 438-511 59-115 (167)
14 PF09577 Spore_YpjB: Sporulati 28.5 3.2E+02 0.007 28.5 8.9 93 31-125 70-193 (232)
15 PF04118 Dopey_N: Dopey, N-ter 27.7 2.9E+02 0.0062 30.0 8.7 141 375-551 4-149 (307)
16 COG3851 UhpB Signal transducti 26.9 8.1E+02 0.018 27.8 11.8 173 147-333 184-384 (497)
17 TIGR03687 pupylate_cterm ubiqu 26.2 31 0.00067 25.5 0.7 23 44-66 10-32 (33)
18 KOG1991|consensus 26.2 1E+02 0.0023 38.1 5.4 36 51-86 957-997 (1010)
19 PF05106 Phage_holin_3: Phage 26.0 75 0.0016 28.8 3.3 88 444-545 9-96 (100)
20 PF04282 DUF438: Family of unk 25.5 3.7E+02 0.0079 23.2 7.2 52 58-110 2-58 (71)
21 COG2956 Predicted N-acetylgluc 25.5 6.2E+02 0.013 28.3 10.6 180 111-314 75-265 (389)
22 KOG1059|consensus 24.9 8.5E+02 0.018 29.9 12.2 122 444-578 320-445 (877)
23 PRK14962 DNA polymerase III su 23.9 1.1E+03 0.024 27.0 12.8 100 51-158 178-291 (472)
24 PF06025 DUF913: Domain of Unk 23.5 69 0.0015 35.5 3.2 54 418-471 196-251 (379)
25 smart00572 DZF domain in DSRM 23.2 1.7E+02 0.0036 31.0 5.7 69 421-503 118-190 (246)
26 PF02847 MA3: MA3 domain; Int 22.3 3.8E+02 0.0083 23.5 7.2 65 53-119 4-68 (113)
27 PRK11880 pyrroline-5-carboxyla 21.7 5.6E+02 0.012 26.0 9.2 102 51-153 137-252 (267)
28 PF05997 Nop52: Nucleolar prot 21.4 4.5E+02 0.0098 26.8 8.3 83 227-337 79-170 (217)
29 TIGR02878 spore_ypjB sporulati 21.4 6.2E+02 0.013 26.6 9.2 106 31-143 71-206 (233)
30 cd05024 S-100A10 S-100A10: A s 21.3 1.6E+02 0.0034 26.5 4.4 52 69-129 4-55 (91)
31 PRK07531 bifunctional 3-hydrox 21.1 1.9E+02 0.0042 32.9 6.2 91 52-143 159-273 (495)
32 PF05402 PqqD: Coenzyme PQQ sy 20.0 4E+02 0.0086 21.4 6.3 52 49-118 14-65 (68)
No 1
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4.1e-179 Score=1476.26 Aligned_cols=575 Identities=61% Similarity=1.042 Sum_probs=553.5
Q ss_pred CCCcccccccCCCc---cCccC-CCCCCCCCCCCChHHHHHHHHhhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHH
Q psy15691 1 MNDDYDDEQTHRWD---QDMVD-VDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLS 76 (620)
Q Consensus 1 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~yi~~gG~P~~vv~~Ls 76 (620)
|++|||.++ +|+ |+.+. +++++.++.+++++++++||++.|++|||||||+|+++||+||++||+|++||++||
T Consensus 1 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG~p~~vv~~Ls 78 (584)
T PF04858_consen 1 MEEDYEGDR--GWESSDGEGDDQEDDEEESEADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGGDPEEVVELLS 78 (584)
T ss_pred CCchhhhcc--ccccccCCCCcccCccccccCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCCCHHHHHHHHH
Confidence 899999866 695 33322 344455555789999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCChHHHHHHhcChhHHHHHHHHHH
Q psy15691 77 QNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAE 156 (620)
Q Consensus 77 ~~Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~~~~WRsliy~LaE 156 (620)
+||+|||||||||++||+++|+++++||+++++|||++|+|||||+|||+|||++|++|+||++||+||+||+|||+|||
T Consensus 79 ~~Y~g~aq~~~ll~~WL~~~~~~~~~v~~~~~~~lk~~i~~~FD~~k~D~ift~~~~~p~WL~~mi~~~~WR~liy~Lae 158 (584)
T PF04858_consen 79 ENYRGYAQMCNLLAEWLIDLGVSPEDVQEIVESHLKELIKKRFDPKKADTIFTEEGSTPAWLDEMIEHPRWRSLIYELAE 158 (584)
T ss_pred HhcccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCCCChHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchhhHHHHHHHhhccchhhhhchhhHhhhHHHHHHHHHHHHHHHhcC-cchHHHhHHHHhhhhhcCchhHHHHHHH
Q psy15691 157 EYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES-SDDWQSSVEECAKMVCHGQHTYVYSQVL 235 (620)
Q Consensus 157 ~~p~clmLnfaIk~IsdaG~q~EI~svstaa~~~~VF~rvL~~~i~~~l~~-~e~~~~~~~el~km~C~sehTYlyaQ~l 235 (620)
+||||+|||||||+|||||||+||+|++|||+||+||+|||+++|.+|+.. ++++++++++|+||||||||||+|||+|
T Consensus 159 ~~p~~l~L~faik~IsdaG~~~Ei~s~~taa~~~~VF~~vl~~~i~~~~~~~~d~~~~~~~~l~k~~C~sehTYlyaQ~l 238 (584)
T PF04858_consen 159 RHPDCLFLNFAIKLISDAGYQHEITSVSTAAQQFEVFSRVLKDSISRFLAAGEDELQEAIAELKKMCCHSEHTYLYAQAL 238 (584)
T ss_pred HCCCCHHHHHHHHHHHHcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 8999999999999999999999999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHHHhcCCCchhHHHHhcCCCCcccHHHHHHHHhccCCCChhhHHHHHHHhcCCCCCc
Q psy15691 236 LQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPP 315 (620)
Q Consensus 236 L~~L~~e~~g~~~~~rlsQele~~A~~~g~~v~~i~~~l~~~~~yp~~~~ai~smLs~~~l~paDI~~Ly~~Y~~~~pPP 315 (620)
|+.|+|+.+|+++++||+||||++|+++|++|++++++|+|+++||++++|+++||++|++|||||++||++|++++|||
T Consensus 239 L~~L~~~~~~~~~~~rlsqELe~~A~~~~~~vt~i~~aL~~s~~~p~a~~ai~smLs~~~l~paDI~~Ly~~Y~~~~pPP 318 (584)
T PF04858_consen 239 LHELSQESDGGSAMRRLSQELEREAAKRGHDVTDITLALNGSSSYPEACQAIASMLSSNALNPADITKLYRMYSSPDPPP 318 (584)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHhcCccCchHHHHHHHHHhcCCCCHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHhcCCCCCCCCCchhhHHHHHHhhhhcccccCccccccccCChHHHHHHHHHHHHHHHHhhcC-C
Q psy15691 316 IDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSS-K 394 (620)
Q Consensus 316 v~lLR~P~~l~lLld~LF~pg~~in~e~r~kyi~LLAyAasV~e~~~~~~~~~~~~~~del~~T~~aie~a~~ic~~~-~ 394 (620)
|+|||+|.|+++|+|+||+||.++|++||+||+|||||||||+|+++.++. ...+++||+++|++|||+||+||+.. +
T Consensus 319 V~lLR~P~~l~lLld~LF~pg~~i~~e~r~kyi~LLAYAasV~e~~~~~~~-~~~~~~del~~t~~ale~a~~ic~~~~~ 397 (584)
T PF04858_consen 319 VELLRHPQFLDLLLDALFKPGSKINPEHRSKYIYLLAYAASVVETPAKNQP-DRSLNCDELKSTKQALEKAHAICCNAAR 397 (584)
T ss_pred chhhcCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHHHHcccccccCcc-cccccHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999887632 24679999999999999999997764 7
Q ss_pred CchhHHHHHHHHhhhcccCccchhhHHHHHhhhcCCcccccccCCchhHHHHHHHHHHhcccchHHHHHHHHHHHhcccc
Q psy15691 395 SSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQD 474 (620)
Q Consensus 395 ~~~el~~el~~L~~~i~~PvVa~GVL~wv~~~l~~ps~f~~~~~~tp~~l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~ 474 (620)
|+++++++++.|++||+|||||+|||+||+++|++|+||+..++++|+||.||||||+|||.||+.||++|+++|+++++
T Consensus 398 g~~~~~~el~~L~~~i~~PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~ 477 (584)
T PF04858_consen 398 GSSELQAELPKLYSCIRYPVVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGD 477 (584)
T ss_pred ccchhHHHHHHHHHHhCCChhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHhhhhhhcCccc
Q psy15691 475 ELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEI 554 (620)
Q Consensus 475 el~~l~~lelkr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD~SLIRyFv~eVLeii~PPYS~eFv~~flpll~~~~i 554 (620)
++++++++|+||++|||||||+++|||+|||+||++||.+|++|+|||||||+||||+|+||||++|+++|+|||+|++|
T Consensus 478 ~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii~PPYS~~Fv~~~l~ll~~~~i 557 (584)
T PF04858_consen 478 ELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEIIGPPYSPEFVQLFLPLLENAEI 557 (584)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcHHHHHHHhhccc
Q psy15691 555 TGTMRGDGENDPVSEFIVQTLEHE 578 (620)
Q Consensus 555 ~~~l~~~~~~~~v~eFi~~c~~~~ 578 (620)
+|+|++++++|+|++|++|||++-
T Consensus 558 ~~~~~~~~~~~~v~~F~~~c~~~~ 581 (584)
T PF04858_consen 558 RGGMRTEGDNDPVSEFIVHCKRNY 581 (584)
T ss_pred hhhhccCCCCchHHHHHHHHHhcc
Confidence 999999999999999999999873
No 2
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.56 E-value=1.7e+02 Score=33.39 Aligned_cols=162 Identities=22% Similarity=0.232 Sum_probs=84.3
Q ss_pred HHHHHHHhhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHHh--------hhHhHHHHH---HHHHHHHHhcCCChHH
Q psy15691 34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQ--------NYKAVAQMA---NLVAEWLILGGVNVTE 102 (620)
Q Consensus 34 ~~~~e~~~~l~~~DaIMEp~i~~~ik~yi~~gG~P~~vv~~Ls~--------~Y~G~aqm~---~ll~~WL~~~g~~~~e 102 (620)
.++..|+..+. ++.+ -|++...+.+-++ +|...|+.|+= +=.|.++++ +++..=+..++.+..+
T Consensus 60 ~iL~~~l~~~~-~~~l-~~~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~ 134 (503)
T PF10508_consen 60 DILKRLLSALS-PDSL-LPQYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLS 134 (503)
T ss_pred HHHHHHHhccC-HHHH-HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHH
Confidence 44666666553 3333 3444444444444 34445554421 113333433 4555555667778899
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhhhccCCCChHHHHHHhc--ChhHHHHHHHHHHhCCCchhhHHHHHHHhhccchhhh
Q psy15691 103 VQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIE--HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180 (620)
Q Consensus 103 v~~~~e~~Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~--~~~WRsliy~LaE~~p~clmLnfaIk~IsdaG~q~EI 180 (620)
|....-+.|+.+... +...+.+|.... ..=|..++. +..-|-=+|+| . -+|
T Consensus 135 Va~~A~~~L~~l~~~---~~~~~~l~~~~~--~~~L~~l~~~~~~~vR~Rv~el------------~----------v~i 187 (503)
T PF10508_consen 135 VAKAAIKALKKLASH---PEGLEQLFDSNL--LSKLKSLMSQSSDIVRCRVYEL------------L----------VEI 187 (503)
T ss_pred HHHHHHHHHHHHhCC---chhHHHHhCcch--HHHHHHHHhccCHHHHHHHHHH------------H----------HHH
Confidence 988898999998863 456667885443 333444443 35555445543 1 234
Q ss_pred hchhhHhhhHHHHHHHHHHHHHHHhcCcchH-HHhHHH-HhhhhhcCchhH
Q psy15691 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDW-QSSVEE-CAKMVCHGQHTY 229 (620)
Q Consensus 181 ~svstaa~~~~VF~rvL~~~i~~~l~~~e~~-~~~~~e-l~km~C~sehTY 229 (620)
.++|..+...-+.+.++... -+-+.++|-+ +.+.-+ +..++. +.|++
T Consensus 188 ~~~S~~~~~~~~~sgll~~l-l~eL~~dDiLvqlnalell~~La~-~~~g~ 236 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLL-LKELDSDDILVQLNALELLSELAE-TPHGL 236 (503)
T ss_pred HhcCHHHHHHHHhccHHHHH-HHHhcCccHHHHHHHHHHHHHHHc-ChhHH
Confidence 45555454454544444222 2334554554 545444 444444 77764
No 3
>PF14964 DUF4507: Domain of unknown function (DUF4507)
Probab=67.14 E-value=65 Score=35.70 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHH-----------------HhhcCCCCCHHHHHhhhh
Q psy15691 485 RKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEV-----------------LEAITPPYTPEFVQLFLP 547 (620)
Q Consensus 485 kr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD~SLIRyFv~eV-----------------Leii~PPYS~eFv~~flp 547 (620)
|..+|-++|-|--.+.+.|||+-+.-|.++..-..+.--+.+..+ |..++|+|---|+.++..
T Consensus 109 R~~lL~kLVS~AIa~~~~~VL~~a~~Wmqq~g~~s~~s~~La~~iv~dy~~l~p~~~~~L~~l~~~sP~F~a~fitavt~ 188 (362)
T PF14964_consen 109 RMSLLSKLVSMAIALPCVPVLNCAATWMQQLGCSSSYSLRLAQMIVEDYCCLSPGSQETLKQLPNVSPRFCANFITAVTS 188 (362)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhccCCccHHHHHHhhccChHHHHHHHHHHHH
Confidence 889999999999999999999999999988555444333333333 556667777777666666
Q ss_pred hhcC
Q psy15691 548 IVEN 551 (620)
Q Consensus 548 ll~~ 551 (620)
+-.+
T Consensus 189 ly~~ 192 (362)
T PF14964_consen 189 LYDN 192 (362)
T ss_pred HccC
Confidence 6654
No 4
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.09 E-value=74 Score=30.93 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcCcchh---HHHHHHHhhhcCCCch
Q psy15691 443 HLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVP---VVKYVKQCWQRGDTDI 519 (620)
Q Consensus 443 ~l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~el~~l~~lelkr~llD~~V~Lls~G~VlP---Vl~~i~~~~~~~~lD~ 519 (620)
-+..+..++.+||.+=...+..+...+..+.+ ..|++.+=.+-+|+..|++-+ .+..+-.+.. +-|+
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~--------~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~--D~~~ 77 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLRDEDP--------LVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV--DENP 77 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc--CCCH
Confidence 35677888999998888888888888876543 478999999999999998766 3244555542 4444
Q ss_pred HHHHHHHHHHHhhcCCC-CCHHHHHhhhhhhc
Q psy15691 520 SLIRYFVTEVLEAITPP-YTPEFVQLFLPIVE 550 (620)
Q Consensus 520 SLIRyFv~eVLeii~PP-YS~eFv~~flpll~ 550 (620)
. ||-++...+.-+.-+ ++.-|.+.|..++.
T Consensus 78 ~-Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 78 E-IRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred H-HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3 555555555555555 55557777777775
No 5
>KOG1058|consensus
Probab=51.28 E-value=3.6e+02 Score=33.07 Aligned_cols=222 Identities=17% Similarity=0.182 Sum_probs=115.0
Q ss_pred cchHHHhHHHHhhhhhcC--chhHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHhcCCCchhHHHHhcCCCCcccHHH
Q psy15691 208 SDDWQSSVEECAKMVCHG--QHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQ 285 (620)
Q Consensus 208 ~e~~~~~~~el~km~C~s--ehTYlyaQ~lL~~L~~e~~g~~~~~rlsQele~~A~~~g~~v~~i~~~l~~~~~yp~~~~ 285 (620)
.+.++-.+=||.+-+||. ..--.|-+.++.-|...+ . .++ =+| +..+ +-+.+....--.+.+
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~sts-s--aV~-------fEa---a~tl---v~lS~~p~alk~Aa~ 282 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTS-S--AVI-------FEA---AGTL---VTLSNDPTALKAAAS 282 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCC-c--hhh-------hhh---cceE---EEccCCHHHHHHHHH
Confidence 466677788888888883 445567778877775442 1 110 011 1111 011122111112334
Q ss_pred HHHHHhccCCCChhhHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCCCCCCCCchhhHHHHHHhhhhcccccCccc
Q psy15691 286 ALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKK 365 (620)
Q Consensus 286 ai~smLs~~~l~paDI~~Ly~~Y~~~~pPPv~lLR~P~~l~lLld~LF~pg~~in~e~r~kyi~LLAyAasV~e~~~~~~ 365 (620)
.+-.++-+.+=|-.-+++|-+.+.=. =+|...+.-|+=+...-=+.=+-+.|.|++.+.-=-++-++
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~-------~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN------ 349 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELK-------ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN------ 349 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHh-------hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc------
Confidence 44455544433333333333333211 12334444443333221111123788999887432222111
Q ss_pred cccccCChHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHhh-hcccCccchhhHHHHHhhhcCCcccccccCCchhHH
Q psy15691 366 TKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFH-CIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHL 444 (620)
Q Consensus 366 ~~~~~~~~del~~T~~aie~a~~ic~~~~~~~el~~el~~L~~-~i~~PvVa~GVL~wv~~~l~~ps~f~~~~~~tp~~l 444 (620)
-.|=+.--+..+.+.|+- .......+=+.-+.++.. .++||=+|..|+..+-.+++|. +..+..-.|
T Consensus 350 ------vediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~-----N~~aas~vl 417 (948)
T KOG1058|consen 350 ------VEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS-----NEAAASDVL 417 (948)
T ss_pred ------HHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC-----CHHHHHHHH
Confidence 011122222333344443 112222222333455543 5899999999999998888876 334455678
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHh
Q psy15691 445 ALLDEVVTCHTFLHHKVLQLFIELFE 470 (620)
Q Consensus 445 ~LLdeIa~~Hp~lr~~vL~lL~~l~e 470 (620)
.+++|+.++.|.||..++.-+..-|.
T Consensus 418 ~FvrE~iek~p~Lr~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 418 MFVREAIEKFPNLRASIIEKLLETFP 443 (948)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHhhh
Confidence 99999999999999998887777665
No 6
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=49.76 E-value=78 Score=34.25 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCCCCCCC--CchhhHHHHHHhhhhcccccCccccccccCChHHHHHHHHHHHHHHHHhhc-CCCchh
Q psy15691 322 PQFLELLTDSLFKPGVKLNP--EHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNS-SKSSNE 398 (620)
Q Consensus 322 P~~l~lLld~LF~pg~~in~--e~r~kyi~LLAyAasV~e~~~~~~~~~~~~~~del~~T~~aie~a~~ic~~-~~~~~e 398 (620)
..|-..++++|+.|-..-.. +.+++.+.||-.- +.+ .+- |.+.|+++.. .....+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~---------~vr---mLI----------IDE~H~lLaGs~~~qr~ 167 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRL---------GVR---MLI----------IDEFHNLLAGSYRKQRE 167 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHc---------CCc---EEE----------eechHHHhcccHHHHHH
Confidence 35888889999888543322 3445556666421 222 333 3345666333 344567
Q ss_pred HHHHHHHHhhhcccCccchhhHHHHHhhhcCCcc---ccccc----CCchhHHHHHHHHHHhcccchHHHH
Q psy15691 399 LIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSY---FKLCT----EHTPTHLALLDEVVTCHTFLHHKVL 462 (620)
Q Consensus 399 l~~el~~L~~~i~~PvVa~GVL~wv~~~l~~ps~---f~~~~----~~tp~~l~LLdeIa~~Hp~lr~~vL 462 (620)
+.+.+..|-+-++.|+|++|+--.+...-+||.. |+... +...-+..||.-+...=|+-++.-|
T Consensus 168 ~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l 238 (302)
T PF05621_consen 168 FLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNL 238 (302)
T ss_pred HHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCC
Confidence 8888999989999999999999888877788722 22110 1122345566655555555555443
No 7
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=46.35 E-value=61 Score=31.12 Aligned_cols=59 Identities=20% Similarity=0.389 Sum_probs=36.3
Q ss_pred hHHHHHhhhcCCcccccccCCchhHHHHHHHHHHhcccchHHHHHHHHHHHhcccchhHHHHH
Q psy15691 419 VIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQ 481 (620)
Q Consensus 419 VL~wv~~~l~~ps~f~~~~~~tp~~l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~el~~l~~ 481 (620)
+|+|+..++++|.|++.+.+-.-+.|.+-...... -+.+.+.+..+-..-..|+....+
T Consensus 79 iL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~----s~~v~~~~~~L~~~v~~E~~~~~~ 137 (148)
T PF09384_consen 79 ILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQ----SPEVDKLFQKLQRKVQEELQLQKE 137 (148)
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999887654444444444443333 335555666666655555554433
No 8
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.67 E-value=46 Score=29.85 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=35.5
Q ss_pred HHHhhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHHh
Q psy15691 38 ECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQ 77 (620)
Q Consensus 38 e~~~~l~~~DaIMEp~i~~~ik~yi~~gG~P~~vv~~Ls~ 77 (620)
|..+.-+.....|+|+||..|=+.++.+=.|..+.++|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~ 68 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKS 68 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5566666789999999999999999999999999999875
No 9
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=33.96 E-value=8.4e+02 Score=29.31 Aligned_cols=134 Identities=16% Similarity=0.254 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHHHHhhCCcchhh---------h
Q psy15691 69 EQVIELLSQNYKAVAQMANLVAEWLIL-------------GGVNVTEVQAMVENHLKDMILKTFDPKKAD---------T 126 (620)
Q Consensus 69 ~~vv~~Ls~~Y~G~aqm~~ll~~WL~~-------------~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD---------~ 126 (620)
.+-++.|.+--.+.+..+.-++.|+.. +|..+. .-|-+-+++-+.+|+-|.--| .
T Consensus 32 ~~rl~~Ll~~L~~~p~~~~~l~~~l~~~l~~~~~~~L~~d~Gi~~~---~gF~~El~~Rl~~r~lP~~~d~~~l~~lf~~ 108 (643)
T PF10136_consen 32 HARLRALLDVLERNPELRAALRRYLRRLLRERRQYPLLTDSGILSR---SGFFSELSRRLYERLLPAPPDPNDLSDLFNL 108 (643)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCC---ccHHHHHHHHHHhhcCCCCCChhHHHHHHHH
Confidence 455666666666666666665555532 222221 225577777778888765433 3
Q ss_pred hhccCCCChHHHHHHhcChhHHHHHHHH-HHhCCCch-----------hhHHHHHHHhhccchhhhhchhh----HhhhH
Q psy15691 127 IFTEEGETPAWLTEMIEHPTWRSLIYRL-AEEYPDCL-----------MLNFTIKLISDAGFQREITSIST----AAQQI 190 (620)
Q Consensus 127 ift~~~~~P~WL~~mi~~~~WRsliy~L-aE~~p~cl-----------mLnfaIk~IsdaG~q~EI~svst----aa~~~ 190 (620)
+|.+ .+-..||.. |.+.+|.+++==| .+..++.. =+.....+|+-.|...|+...-+ ..+-|
T Consensus 109 lF~~-~~D~~Wl~a-i~~~~w~~L~~lL~~~~~~~~~~~~~~~~~ll~Ai~~Ls~~I~a~glepel~r~~p~~~~~~sPF 186 (643)
T PF10136_consen 109 LFPR-PSDAEWLEA-IPDETWLRLFELLGAEEEEDQDASPHWRQELLDAIEMLSYRIAAEGLEPELRRRMPELEERDSPF 186 (643)
T ss_pred HCCC-CCcHHHHHh-CCHHHHHHHHHHhCcCccccchhHHHHHHHHHHHHHHHHHHHHhcccCHHHHhhCCCCcccCCCH
Confidence 5543 356789975 6888999987777 11111111 23333446667899999985532 44666
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy15691 191 EVFSRVLKTSISNFLES 207 (620)
Q Consensus 191 ~VF~rvL~~~i~~~l~~ 207 (620)
-..++-+..-+....+.
T Consensus 187 ~al~~e~~~~~~~~~~~ 203 (643)
T PF10136_consen 187 VALQREVEAFLEAYRQQ 203 (643)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666665555555544
No 10
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=32.49 E-value=4.3e+02 Score=25.00 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHHHhcccchHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCc
Q psy15691 439 HTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTD 518 (620)
Q Consensus 439 ~tp~~l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~el~~l~~lelkr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD 518 (620)
..|.|-.|+..+....|..+..+++-+..-|+......+. ..-...+. .+.++..++.-+-++
T Consensus 51 ~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~~e~~~~-~~~~~~~~----------------~i~fl~eL~~~~~i~ 113 (200)
T smart00543 51 FIPAYARLCALLNAKNPDFGSLLLERLQEEFEKGLESEEE-SDKQRRLG----------------LVRFLGELYNFQVLT 113 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHh----------------HHHHHHHHHHcccCc
Confidence 4778889999999999988888888887777663111111 11122333 444555555555556
Q ss_pred hHHHHHHHHHHHhhcCCC---CCHHHHHhhhhhhcCcccccc-ccCCCCCCcHHHHHHHhhccc
Q psy15691 519 ISLIRYFVTEVLEAITPP---YTPEFVQLFLPIVENDEITGT-MRGDGENDPVSEFIVQTLEHE 578 (620)
Q Consensus 519 ~SLIRyFv~eVLeii~PP---YS~eFv~~flpll~~~~i~~~-l~~~~~~~~v~eFi~~c~~~~ 578 (620)
.+.+...+.++++...+| -+..-+..++-++.. .|. +...+..+.+++|++......
T Consensus 114 ~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~---~G~~l~~~~~~~~~~~~l~~l~~~~ 174 (200)
T smart00543 114 SKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPT---CGKDLEREKSPKLLDEILERLQDYL 174 (200)
T ss_pred HHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHH---hhHHHcCcccHHHHHHHHHHHHHHH
Confidence 666666666666666665 334555555555543 233 322334456777777766554
No 11
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=30.52 E-value=60 Score=27.81 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHhcCCCchh
Q psy15691 227 HTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTP 269 (620)
Q Consensus 227 hTYlyaQ~lL~~L~~e~~g~~~~~rlsQele~~A~~~g~~v~~ 269 (620)
+..+|||.++-.|++..-|+..+..+-|++-..|.++|.+...
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e 43 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLRE 43 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHH
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4678999999999975457788899999999999888766543
No 12
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.50 E-value=2.4e+02 Score=27.18 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHHHcCCChHHHHHHHHhhh-HhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy15691 58 LKRYFQAGGNPEQVIELLSQNY-KAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMIL 116 (620)
Q Consensus 58 ik~yi~~gG~P~~vv~~Ls~~Y-~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li~ 116 (620)
=++|++.=|.++.|++..-+.+ .|-.|.|--|.+|+..++-+..+.+++.-+.++++-.
T Consensus 60 A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 60 AKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4588998888899999998888 8999999999999999998888887777666666543
No 13
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=28.92 E-value=1.5e+02 Score=29.43 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=40.3
Q ss_pred CCchhHHHHHHHHHHhcccchHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-HHhcCcchhHHHHHHHh
Q psy15691 438 EHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVN-LLCRGCVVPVVKYVKQC 511 (620)
Q Consensus 438 ~~tp~~l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~el~~l~~lelkr~llD~~V~-Lls~G~VlPVl~~i~~~ 511 (620)
++.|+=+.||. +...||..+...+|+|.++=.+ -|-.|+ |++.|.++..+.|+++-
T Consensus 59 DSk~lA~~LLs-~~~~~~~~~Ql~lDMLkRL~~~-----------------~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 59 DSKPLACQLLS-LGNQYPPAYQLGLDMLKRLGTA-----------------YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred CcHHHHHHHHH-hHccChHHHHHHHHHHHHhhhh-----------------HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 55777666654 4667888888888888776422 122343 78999999999999883
No 14
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=28.45 E-value=3.2e+02 Score=28.54 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=58.4
Q ss_pred ChHHHHHHHHhhcCCCCcccc----------ccHH---HHHHHHHHcCCChHHHH---HHHHhhhH---------hHHHH
Q psy15691 31 NPQEVLNECLEKFSTPDYIME----------PGIF---SQLKRYFQAGGNPEQVI---ELLSQNYK---------AVAQM 85 (620)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaIME----------p~i~---~~ik~yi~~gG~P~~vv---~~Ls~~Y~---------G~aqm 85 (620)
++++.+..+.+.==.-||+-. +.|+ +.||+..+.| +++..- |.|-+.|- .-++.
T Consensus 70 ~~~e~~~~at~~RLavDAl~~~~qPLW~~~e~~i~~~~~~mk~a~~~~-~~~~f~~~~n~f~~~y~~I~Psl~I~~~~~~ 148 (232)
T PF09577_consen 70 SEEEKIRAATQFRLAVDALTHKHQPLWLQYEKPIMEDFQRMKQAAQKG-DKEAFRASLNEFLSHYELIRPSLTIDRPPEQ 148 (232)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcchhhccCCHHH
Confidence 455666666555445566643 3444 4455555555 444444 44444442 23677
Q ss_pred HHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHHhhCCcchhh
Q psy15691 86 ANLVAEWLILGGV------NVTEVQAMVENHLKDMILKTFDPKKAD 125 (620)
Q Consensus 86 ~~ll~~WL~~~g~------~~~ev~~~~e~~Lk~li~k~FDp~kaD 125 (620)
.+.+..|+.+++- +.+++++-+ +-++.-+.+-||..|-|
T Consensus 149 v~~v~s~i~yl~~~~~~~~~~~~~~~~l-~~le~~l~~lF~~~k~d 193 (232)
T PF09577_consen 149 VQRVDSHISYLERLRFQQLDQKEVQEAL-EQLEEDLQKLFDGVKED 193 (232)
T ss_pred HHHHHHHHHHHHHhhhcccChHHHHHHH-HHHHHHHHHHhCccccc
Confidence 8899999998873 445555555 66788899999999977
No 15
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=27.71 E-value=2.9e+02 Score=29.96 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHhhhcccCccchhhHHHHHhhhcCCcccccccCCchhHHHHHHHHHHh-
Q psy15691 375 DLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTC- 453 (620)
Q Consensus 375 el~~T~~aie~a~~ic~~~~~~~el~~el~~L~~~i~~PvVa~GVL~wv~~~l~~ps~f~~~~~~tp~~l~LLdeIa~~- 453 (620)
+.+...++++|+.+.=...+.=.++.+-+++|.+++. -..+.+. --|--+.+-+.+|.|
T Consensus 4 k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq---------------~~~~~~~-----~IP~k~~v~krLaqCL 63 (307)
T PF04118_consen 4 KYKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQ---------------NSNNQFP-----YIPHKLQVSKRLAQCL 63 (307)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh---------------ccCCCCc-----eeCcHHHHHHHHHHhc
Confidence 4566667777777763322222456667777776655 0111111 134445666777776
Q ss_pred cccc----hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy15691 454 HTFL----HHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEV 529 (620)
Q Consensus 454 Hp~l----r~~vL~lL~~l~e~~~~el~~l~~lelkr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD~SLIRyFv~eV 529 (620)
||.| |.++|+++..+|+..+++ +..=| +++.+.|. +|.+.|..--.+- .=..++..|+. -
T Consensus 64 ~P~LPsGVH~KaLevY~~IF~~ig~~----------~L~~d--l~i~~~GL-fpl~~~asi~Vkp--~lL~i~e~~~l-p 127 (307)
T PF04118_consen 64 NPALPSGVHQKALEVYEYIFERIGPD----------GLAQD--LPIYSPGL-FPLFSYASIQVKP--QLLDIYEKYYL-P 127 (307)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCHH----------HHHhh--cHHHHHHH-HHHHHHHHHhhHH--HHHHHHHHHhc-C
Confidence 6655 899999999999987754 12223 34445554 6777776553221 11122222222 2
Q ss_pred HhhcCCCCCHHHHHhhhhhhcC
Q psy15691 530 LEAITPPYTPEFVQLFLPIVEN 551 (620)
Q Consensus 530 Leii~PPYS~eFv~~flpll~~ 551 (620)
|.-.--|-.+.|+..++|=+++
T Consensus 128 L~~~L~p~l~~li~slLpGLed 149 (307)
T PF04118_consen 128 LGPALRPCLKGLILSLLPGLED 149 (307)
T ss_pred ccHHHHHHHHHHHHHhcccccc
Confidence 2223346666777777777764
No 16
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=26.93 E-value=8.1e+02 Score=27.85 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=87.0
Q ss_pred HHHHHHHH--------HHhCCCchhhHHHHHHH---hhccchhhhh-----chh-hHhhhHHHHHHHHHHHHHHHhcC--
Q psy15691 147 WRSLIYRL--------AEEYPDCLMLNFTIKLI---SDAGFQREIT-----SIS-TAAQQIEVFSRVLKTSISNFLES-- 207 (620)
Q Consensus 147 WRsliy~L--------aE~~p~clmLnfaIk~I---sdaG~q~EI~-----svs-taa~~~~VF~rvL~~~i~~~l~~-- 207 (620)
|-.++|-+ .++...-.++-.++..| +--|.|+-+- |+. ++|.|+.+|+....=.|.-..+.
T Consensus 184 w~~L~fiigll~ql~L~de~~rf~l~~l~lP~I~lA~~yGWQG~llasllnsi~l~~arQ~~~fs~l~dLll~l~~Qal~ 263 (497)
T COG3851 184 WYLLLFIIGLLLQLGLPDELSRFTLFCLALPIIALAWHYGWQGALLASLLNSIALTIARQTWRFSHLVDLLLSLLAQALT 263 (497)
T ss_pred HHHHHHHHHHHHHhcChHhhhhHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 77777765 23433333444455555 4578888764 442 36677777876542222211111
Q ss_pred cchHHHhHHHHhhhhhcCchhHHHHHHHHHHHhhccCCch----HHHHHHHHHHHHHHhc-CCCchhH---HHHhcCCCC
Q psy15691 208 SDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGS----KVKRLAQEITKCAQQS-GHDVTPI---IMALNGAAF 279 (620)
Q Consensus 208 ~e~~~~~~~el~km~C~sehTYlyaQ~lL~~L~~e~~g~~----~~~rlsQele~~A~~~-g~~v~~i---~~~l~~~~~ 279 (620)
.--+.-+++++.++ -|.+=.+|+++..=+. .=..+++++.++-+.. |.++|.| ++.+...+.
T Consensus 264 Gl~LGiaIqrlrel----------nqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~ivkR~~~ 333 (497)
T COG3851 264 GLGLGIAIQRLREL----------NQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGIVKRAAD 333 (497)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhccC
Confidence 01123344444333 2334444443321111 1123555566666543 7788876 445555666
Q ss_pred cccHHHHHHHHhccCCCC-hhhHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q psy15691 280 YPQANQALSSMISRNSLN-PADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLF 333 (620)
Q Consensus 280 yp~~~~ai~smLs~~~l~-paDI~~Ly~~Y~~~~pPPv~lLR~P~~l~lLld~LF 333 (620)
.|++.+|- ++...=+++ -..+..|.+ .-.||-.+=|--|+.+..|++.+=
T Consensus 334 ~~q~kqaa-s~Ie~LslrI~~svrqLL~---rLRP~~LDdL~l~qai~~l~~Em~ 384 (497)
T COG3851 334 NAQVKQAA-SLIEQLSLRIYDSVRQLLG---RLRPRQLDDLTLEQAIRSLLREME 384 (497)
T ss_pred CHhHHhHH-HHHHHHHHHHHHHHHHHHH---hcCCcccccccHHHHHHHHHHHhh
Confidence 66665552 222211111 111222332 235777788888999999999874
No 17
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=26.25 E-value=31 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.6
Q ss_pred CCCCccccccHHHHHHHHHHcCC
Q psy15691 44 STPDYIMEPGIFSQLKRYFQAGG 66 (620)
Q Consensus 44 ~~~DaIMEp~i~~~ik~yi~~gG 66 (620)
..-|-++|.+.-.-++.|+|.||
T Consensus 10 DeId~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 10 DEIDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred HHHHHHHHHhHHHHHHHHHHccC
Confidence 33467888999999999999998
No 18
>KOG1991|consensus
Probab=26.21 E-value=1e+02 Score=38.10 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHc--CCCh---HHHHHHHHhhhHhHHHHH
Q psy15691 51 EPGIFSQLKRYFQA--GGNP---EQVIELLSQNYKAVAQMA 86 (620)
Q Consensus 51 Ep~i~~~ik~yi~~--gG~P---~~vv~~Ls~~Y~G~aqm~ 86 (620)
+.+.|...+++|++ .++| +.+++.|.+.|++-+|-.
T Consensus 957 ~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I 997 (1010)
T KOG1991|consen 957 QVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTI 997 (1010)
T ss_pred ccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHH
Confidence 56788888999885 5555 889999999999887754
No 19
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=26.00 E-value=75 Score=28.79 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHH
Q psy15691 444 LALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIR 523 (620)
Q Consensus 444 l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~el~~l~~lelkr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD~SLIR 523 (620)
-.++..+..+.|..-..++.++..++...++. -..||+++|-.+==+-.-.+.|++++. .++.| .-
T Consensus 9 ~~ll~wl~~~~~~~~~a~lA~~mA~LR~~Y~g------~~~~r~llea~lCg~lal~~~~~L~~~-------gl~~~-~a 74 (100)
T PF05106_consen 9 AQLLAWLQSHWPQIYGALLAFVMALLRGAYGG------GSWRRRLLEALLCGLLALFARSLLEYF-------GLPQS-LA 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHHHHh-------CCChh-hh
Confidence 35777777777888888888888877765633 247889998654333334567777666 34444 34
Q ss_pred HHHHHHHhhcCCCCCHHHHHhh
Q psy15691 524 YFVTEVLEAITPPYTPEFVQLF 545 (620)
Q Consensus 524 yFv~eVLeii~PPYS~eFv~~f 545 (620)
+|+..+...++-.|-.+++..+
T Consensus 75 ~~~g~~IGflGvd~ir~~~~r~ 96 (100)
T PF05106_consen 75 VFIGGFIGFLGVDKIRELIRRF 96 (100)
T ss_pred hhheeeeeccCHHHHHHHHHHH
Confidence 5666666666666666665443
No 20
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.52 E-value=3.7e+02 Score=23.23 Aligned_cols=52 Identities=27% Similarity=0.488 Sum_probs=35.6
Q ss_pred HHHHHH---cCCChHHHHHHHHhhhHhH--HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy15691 58 LKRYFQ---AGGNPEQVIELLSQNYKAV--AQMANLVAEWLILGGVNVTEVQAMVENH 110 (620)
Q Consensus 58 ik~yi~---~gG~P~~vv~~Ls~~Y~G~--aqm~~ll~~WL~~~g~~~~ev~~~~e~~ 110 (620)
||.|++ +|++|++|=+...+...+. ..++.+=-+.+. -|+++++|+.++-=|
T Consensus 2 LK~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~-eG~~~eeiq~LCdvH 58 (71)
T PF04282_consen 2 LKEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQ-EGMPVEEIQKLCDVH 58 (71)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCCHHHHHHHhHHH
Confidence 456665 6889988888888777653 444444444444 789999998886533
No 21
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=25.49 E-value=6.2e+02 Score=28.27 Aligned_cols=180 Identities=17% Similarity=0.275 Sum_probs=102.5
Q ss_pred HHHHHHhhCCcchhhhhhccCCCChHHHHHHhcChhH-----HHHHHHHHHhCCCchhhHHHHHHHhhccchhhhhchhh
Q psy15691 111 LKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW-----RSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSIST 185 (620)
Q Consensus 111 Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~~~~W-----Rsliy~LaE~~p~clmLnfaIk~IsdaG~q~EI~svst 185 (620)
|-.+-+++=..++|..|= ..++++|.- --.+++|+++|=.+=|+.-|=++.-.
T Consensus 75 LGnLfRsRGEvDRAIRiH----------Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~------------ 132 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIH----------QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ------------ 132 (389)
T ss_pred HHHHHHhcchHHHHHHHH----------HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH------------
Confidence 344444444445554443 345555542 23467777776544444443332211
Q ss_pred HhhhHHHHHHHHHHHHHHHhcCcchHHHhHHHHhhhhhcCchhHH-HHHHHHHHHhhccCCchHHHHHHHHHHHHHHhcC
Q psy15691 186 AAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYV-YSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSG 264 (620)
Q Consensus 186 aa~~~~VF~rvL~~~i~~~l~~~e~~~~~~~el~km~C~sehTYl-yaQ~lL~~L~~e~~g~~~~~rlsQele~~A~~~g 264 (620)
-.+-..|.+=-...+-.+.+.+.+|+++++-=.+.+-++-.+|= ---..-++|++.....+...+-.+-+.+.++..-
T Consensus 133 -L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~ 211 (389)
T COG2956 133 -LVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK 211 (389)
T ss_pred -HhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc
Confidence 11122333222222333345578899998877777777755552 2223456777766666677777777888777665
Q ss_pred CCchhHHHHhcC----CCCcccHHHHHHHHhccC-CCChhhHHHHHHHhcCCCCC
Q psy15691 265 HDVTPIIMALNG----AAFYPQANQALSSMISRN-SLNPADITVLFRLYSSPDPP 314 (620)
Q Consensus 265 ~~v~~i~~~l~~----~~~yp~~~~ai~smLs~~-~l~paDI~~Ly~~Y~~~~pP 314 (620)
..|+. ++.++. -..|+.+..+..+++.-| ..-|--+.+|+++|..-+.|
T Consensus 212 ~cvRA-si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 212 KCVRA-SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred cceeh-hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 55642 232322 346888889999998865 34455568899999755544
No 22
>KOG1059|consensus
Probab=24.88 E-value=8.5e+02 Score=29.91 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHH
Q psy15691 444 LALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIR 523 (620)
Q Consensus 444 l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~el~~l~~lelkr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD~SLIR 523 (620)
|-.+.-|+..||..=..=.+++.+++.-.-.. +|-.-||++--|++..-+.-+++.+-.-+. ..|.+..|
T Consensus 320 Llam~KI~ktHp~~Vqa~kdlIlrcL~DkD~S--------IRlrALdLl~gmVskkNl~eIVk~LM~~~~--~ae~t~yr 389 (877)
T KOG1059|consen 320 LLAMSKILKTHPKAVQAHKDLILRCLDDKDES--------IRLRALDLLYGMVSKKNLMEIVKTLMKHVE--KAEGTNYR 389 (877)
T ss_pred HHHHHHHhhhCHHHHHHhHHHHHHHhccCCch--------hHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hccchhHH
Confidence 44567899999999999999999999875433 667889999999999999998887766544 56667777
Q ss_pred H-HHHHHHhhcCC---CCCHHHHHhhhhhhcCccccccccCCCCCCcHHHHHHHhhccc
Q psy15691 524 Y-FVTEVLEAITP---PYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHE 578 (620)
Q Consensus 524 y-Fv~eVLeii~P---PYS~eFv~~flpll~~~~i~~~l~~~~~~~~v~eFi~~c~~~~ 578 (620)
. -++.|+++|+- -|=.+|=+-..=+++-..+-|+-.| ..-..+|++-|.+-+
T Consensus 390 dell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G---~~I~eQi~Dv~iRV~ 445 (877)
T KOG1059|consen 390 DELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHG---SLIAEQIIDVAIRVP 445 (877)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchh---hHHHHHHHHHheech
Confidence 5 57888999987 5678898877777766666664333 344555666555544
No 23
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.88 E-value=1.1e+03 Score=26.98 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=53.8
Q ss_pred cccHHHHHHHHHHcCC--ChHHHHHHHHhhhH-hHHHHHHHHHHHHHhcC--CChHHHHHHHH----HHHHHHHHhhCCc
Q psy15691 51 EPGIFSQLKRYFQAGG--NPEQVIELLSQNYK-AVAQMANLVAEWLILGG--VNVTEVQAMVE----NHLKDMILKTFDP 121 (620)
Q Consensus 51 Ep~i~~~ik~yi~~gG--~P~~vv~~Ls~~Y~-G~aqm~~ll~~WL~~~g--~~~~ev~~~~e----~~Lk~li~k~FDp 121 (620)
+.++...+++..+..| =++++++.|++... +.....|+|.......+ ++.+.|++++. +.+.+++..--..
T Consensus 178 ~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~ 257 (472)
T PRK14962 178 DELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNG 257 (472)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 3455566666665555 24677777777544 34455666665434433 55566655542 3333333332221
Q ss_pred chhhhhhccCCCChHHHHHHhcC---h--hHHHHHHHHHHhC
Q psy15691 122 KKADTIFTEEGETPAWLTEMIEH---P--TWRSLIYRLAEEY 158 (620)
Q Consensus 122 ~kaD~ift~~~~~P~WL~~mi~~---~--~WRsliy~LaE~~ 158 (620)
+ .| ..-.||..|+.. | -.|+|+..++|.-
T Consensus 258 d-~~-------~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi 291 (472)
T PRK14962 258 D-VK-------RVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL 291 (472)
T ss_pred C-HH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 11 233688888754 2 3777777777744
No 24
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=23.52 E-value=69 Score=35.48 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=39.1
Q ss_pred hhHHHHHhhhcCCcccccccC-CchhHH-HHHHHHHHhcccchHHHHHHHHHHHhc
Q psy15691 418 GVIRWVECTVTEPSYFKLCTE-HTPTHL-ALLDEVVTCHTFLHHKVLQLFIELFES 471 (620)
Q Consensus 418 GVL~wv~~~l~~ps~f~~~~~-~tp~~l-~LLdeIa~~Hp~lr~~vL~lL~~l~e~ 471 (620)
+.+.-+=..+++|.|.+.... -++.-+ .-+||++..||.||+.+++.++.+++.
T Consensus 196 ~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~ 251 (379)
T PF06025_consen 196 NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDR 251 (379)
T ss_pred ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 444444456788888764432 234333 679999999999999999998887774
No 25
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=23.23 E-value=1.7e+02 Score=30.96 Aligned_cols=69 Identities=17% Similarity=0.329 Sum_probs=50.0
Q ss_pred HHHHhhhcCCcccccccCCchhHHHHHHHHHHhccc---chHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHH
Q psy15691 421 RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTF---LHHKVLQLFIE-LFESKQDELEILVQLEMRKMLLDRMVNLL 496 (620)
Q Consensus 421 ~wv~~~l~~ps~f~~~~~~tp~~l~LLdeIa~~Hp~---lr~~vL~lL~~-l~e~~~~el~~l~~lelkr~llD~~V~Ll 496 (620)
+|.+...+.. .+.-+.+.+|+..+.|+|. |.+=.+++++. +..+....+++ ...+.|+..++
T Consensus 118 kWFq~~a~~l-------~s~~iviRilKd~~~R~~~~~pL~~w~iELl~~~~i~~~~~~l~~-------~~a~RR~fe~l 183 (246)
T smart00572 118 KWFQARASGL-------QSCVIVIRVLRDLCNRVPTWQPLSGWPLELLVEKAIGSARQPLGL-------GDAFRRVFECL 183 (246)
T ss_pred HHHHHhccCC-------cchhhHHHHHHHHHHhcccccccccccHHHHHHHHhccCCCCCCH-------HHHHHHHHHHH
Confidence 6888765533 2355678999999999999 77888888887 33344444454 24567888899
Q ss_pred hcCcchh
Q psy15691 497 CRGCVVP 503 (620)
Q Consensus 497 s~G~VlP 503 (620)
+.|+.+|
T Consensus 184 AsG~l~p 190 (246)
T smart00572 184 ASGILLP 190 (246)
T ss_pred HhccCcC
Confidence 9999876
No 26
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.32 E-value=3.8e+02 Score=23.50 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHcCCChHHHHHHHHhhhHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC
Q psy15691 53 GIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119 (620)
Q Consensus 53 ~i~~~ik~yi~~gG~P~~vv~~Ls~~Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li~k~F 119 (620)
.++..|++|+.. |+..++++.|.+==.. .+...++..++..+.-..+..++.+-.-|..++.+++
T Consensus 4 ~i~~~l~ey~~~-~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 4 KIFSILMEYFSS-GDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHH-T-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 578889999998 5889999988883222 6777888888888877656666777677777776554
No 27
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.66 E-value=5.6e+02 Score=26.03 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHHcCCCh-----HH---HHHHHHhhhHhHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHH---HHH-Hh
Q psy15691 51 EPGIFSQLKRYFQAGGNP-----EQ---VIELLSQNYKAVA-QMANLVAEWLILGGVNVTEVQAMVENHLK---DMI-LK 117 (620)
Q Consensus 51 Ep~i~~~ik~yi~~gG~P-----~~---vv~~Ls~~Y~G~a-qm~~ll~~WL~~~g~~~~ev~~~~e~~Lk---~li-~k 117 (620)
++..+..+++.++.=|.+ ++ ..--|+-+.-+|. -++.-+.+|....|+++++-..++...++ +++ ..
T Consensus 137 ~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 216 (267)
T PRK11880 137 SAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLES 216 (267)
T ss_pred CHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566677777764433 11 2222444444454 68889999999999999998777665544 233 33
Q ss_pred hCCcchh-hhhhccCCCChHHHHHHhcChhHHHHHHH
Q psy15691 118 TFDPKKA-DTIFTEEGETPAWLTEMIEHPTWRSLIYR 153 (620)
Q Consensus 118 ~FDp~ka-D~ift~~~~~P~WL~~mi~~~~WRsliy~ 153 (620)
..+|... |+|-|-.|.+-+.|+.|=++ ..|+.+.+
T Consensus 217 ~~~~~~l~~~v~tpgG~t~~gl~~l~~~-g~~~~~~~ 252 (267)
T PRK11880 217 GEHPAELRDNVTSPGGTTIAALRVLEEK-GLRAAVIE 252 (267)
T ss_pred CCCHHHHHHhCCCCcHHHHHHHHHHHHC-CHHHHHHH
Confidence 4667666 88888878899999998665 44444443
No 28
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=21.38 E-value=4.5e+02 Score=26.81 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHhhccCCch---------HHHHHHHHHHHHHHhcCCCchhHHHHhcCCCCcccHHHHHHHHhccCCCC
Q psy15691 227 HTYVYSQVLLQVLSLESKGGS---------KVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLN 297 (620)
Q Consensus 227 hTYlyaQ~lL~~L~~e~~g~~---------~~~rlsQele~~A~~~g~~v~~i~~~l~~~~~yp~~~~ai~smLs~~~l~ 297 (620)
..-.|-++.+..+.+|..|-. .+||.-.+.=....++|++- .+.+....++....++
T Consensus 79 ~~~~f~~~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~--------------~~v~~~~~~l~~~~l~ 144 (217)
T PF05997_consen 79 AALLFLKAFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDK--------------ELVEEFNEILSETPLN 144 (217)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHHHccCC
Confidence 667899999999999998821 22443333333334444443 3456667777777777
Q ss_pred hhhHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCCC
Q psy15691 298 PADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGV 337 (620)
Q Consensus 298 paDI~~Ly~~Y~~~~pPPv~lLR~P~~l~lLld~LF~pg~ 337 (620)
+.+ + .|..+-.| |.+..++.|-+-+.
T Consensus 145 ~~~-----------~-~p~Gl~~H--~~Di~ldEL~k~~~ 170 (217)
T PF05997_consen 145 PND-----------Q-VPNGLRYH--FADIFLDELEKVGG 170 (217)
T ss_pred CcC-----------C-CchhHHHH--HHHHHHHHHHHHhc
Confidence 753 2 66776666 88888888877443
No 29
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=21.35 E-value=6.2e+02 Score=26.64 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=63.5
Q ss_pred ChHHHHHHHHhhcCCCCcc----------ccccHHHHHHHHHHc--CCChHHHHHHHHhhhHhH------------HHHH
Q psy15691 31 NPQEVLNECLEKFSTPDYI----------MEPGIFSQLKRYFQA--GGNPEQVIELLSQNYKAV------------AQMA 86 (620)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaI----------MEp~i~~~ik~yi~~--gG~P~~vv~~Ls~~Y~G~------------aqm~ 86 (620)
..++.+..+.++==.-||| ||+.|++.+..-=++ +|++++.=+.|-+.+.=| +.-.
T Consensus 71 ~~~eki~~~t~fRLavDA~~s~~qPLW~~~e~~im~~f~~mk~a~~~~~~~~f~~~ln~Fl~~Y~~I~PSl~Idl~~~~~ 150 (233)
T TIGR02878 71 SDDEKIRAVTAFRLAVDAIVSRSQPLWGSLEKPVMEAFTELEKAAQKEDSQAFQEKLNEFLSLYDLIYPSLTIDVPEDQV 150 (233)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccceeeecCHHHH
Confidence 3455555555443344666 566666655444443 666666666666665555 3556
Q ss_pred HHHHHHHHhcCC------ChHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCChHHHHHHhc
Q psy15691 87 NLVAEWLILGGV------NVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIE 143 (620)
Q Consensus 87 ~ll~~WL~~~g~------~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~ 143 (620)
.-+..|+++++. +.++.++-+ .-++.-+.+-||.-|=| +.-|.|+|-||.
T Consensus 151 q~v~~~i~~l~~~r~~~~~~~~~~~~L-~~~~~dl~~lF~~vkkD------~aDPSLiWvmis 206 (233)
T TIGR02878 151 QRVDSHLSYLENFRFQQRSEDEKEEQL-SLMRGDLKALFDGVKED------EADPSLLWVMIS 206 (233)
T ss_pred HHHHHHHHHHHhhhhhccChHHHHHHH-HHHHHHHHHHHcccccC------CCCcHHHHHHHH
Confidence 677788887763 333333332 33445567777777666 467999999985
No 30
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=21.27 E-value=1.6e+02 Score=26.54 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCCcchhhhhhc
Q psy15691 69 EQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFT 129 (620)
Q Consensus 69 ~~vv~~Ls~~Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift 129 (620)
|.+++.|.+.|.-|| ++ ..-.+..|...+++.-|-.++...=||+.+|.+|.
T Consensus 4 E~ai~~lI~~FhkYa------G~---~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~ 55 (91)
T cd05024 4 EHSMEKMMLTFHKFA------GE---KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMK 55 (91)
T ss_pred HHHHHHHHHHHHHHc------CC---CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHH
Confidence 567777777777777 11 22368899999999999999988889999998884
No 31
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=21.11 E-value=1.9e+02 Score=32.87 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHcCCChHHHHHHHHhhhHhHHHHHHHHHHHH---HhcCCChHHHHHHHHHH------------HHHH--
Q psy15691 52 PGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWL---ILGGVNVTEVQAMVENH------------LKDM-- 114 (620)
Q Consensus 52 p~i~~~ik~yi~~gG~P~~vv~~Ls~~Y~G~aqm~~ll~~WL---~~~g~~~~ev~~~~e~~------------Lk~l-- 114 (620)
|.+++.++.|+++=|...-++..+..||.+-..++.++++=+ ...|.+++++.+++..- ..++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 478888999999855555566678899998888888766654 34457888887776522 1222
Q ss_pred -------HHhhCCcchhhhhhccCCCChHHHHHHhc
Q psy15691 115 -------ILKTFDPKKADTIFTEEGETPAWLTEMIE 143 (620)
Q Consensus 115 -------i~k~FDp~kaD~ift~~~~~P~WL~~mi~ 143 (620)
..++|-|..- ..+++-+..|+|.++|++
T Consensus 239 ~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 273 (495)
T PRK07531 239 GEAGMRHFLAQFGPCLK-WPWTKLMDVPDLDDALVD 273 (495)
T ss_pred cHHHHHHHHHHhchhhh-hHHHhccCCCccCHHHHH
Confidence 3456776653 466666678888888886
No 32
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=20.02 E-value=4e+02 Score=21.37 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=28.8
Q ss_pred cccccHHHHHHHHHHcCCChHHHHHHHHhhhHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q psy15691 49 IMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKT 118 (620)
Q Consensus 49 IMEp~i~~~ik~yi~~gG~P~~vv~~Ls~~Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li~k~ 118 (620)
.+++....-.+.. ..+.+.+++++.|.+.| +++++++++=+...|.+|..+.
T Consensus 14 ~Ln~~a~~Iw~~~-~g~~t~~ei~~~l~~~y-----------------~~~~~~~~~dv~~fl~~L~~~g 65 (68)
T PF05402_consen 14 TLNETAAFIWELL-DGPRTVEEIVDALAEEY-----------------DVDPEEAEEDVEEFLEQLREKG 65 (68)
T ss_dssp ---THHHHHHHH---SSS-HHHHHHHHHHHT-----------------T--HHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHc-cCCCCHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHCc
Confidence 3444333333333 44456788888888887 5666777777777777776554
Done!