Query psy15691
Match_columns 620
No_of_seqs 69 out of 71
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:02:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c24_A Putative oxidoreductase 41.8 89 0.003 30.6 8.9 98 51-152 158-272 (286)
2 4at7_A Interleukin enhancer-bi 29.8 67 0.0023 34.1 5.9 57 441-504 195-257 (364)
3 1x4q_A U4/U6 small nuclear rib 28.0 1.7E+02 0.0058 25.0 7.1 68 482-556 16-84 (92)
4 2xzm_O RPS13E; ribosome, trans 25.7 88 0.003 29.4 5.2 55 252-306 31-95 (153)
5 2ahr_A Putative pyrroline carb 24.7 3.6E+02 0.012 25.6 9.8 101 51-152 133-246 (259)
6 3u5c_N S27A, YS15, 40S ribosom 24.1 79 0.0027 29.7 4.6 55 252-306 29-93 (151)
7 3d5l_A Regulatory protein RECX 23.2 3.7E+02 0.012 25.9 9.5 37 145-181 156-199 (221)
8 3vu7_H DNA repair protein REV1 23.1 3.5E+02 0.012 24.3 8.6 65 81-154 37-105 (124)
9 4fjo_A DNA repair protein REV1 20.2 3.9E+02 0.013 22.7 8.0 65 81-154 10-78 (97)
10 4abx_A DNA repair protein RECN 19.6 5.3E+02 0.018 23.7 9.8 78 37-118 55-141 (175)
No 1
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=41.80 E-value=89 Score=30.60 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=60.6
Q ss_pred cccHHHHHHHHHHcCCC----h-------HHHH-HHHHhhhHhHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q psy15691 51 EPGIFSQLKRYFQAGGN----P-------EQVI-ELLSQNYKAVAQ---MANLVAEWLILGGVNVTEVQAMVENHLKDMI 115 (620)
Q Consensus 51 Ep~i~~~ik~yi~~gG~----P-------~~vv-~~Ls~~Y~G~aq---m~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li 115 (620)
++.....++++++.=|. + -+.+ ..++ |..|.+. +++.+..+....|+++++..+++...++...
T Consensus 158 ~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~-n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~ 236 (286)
T 3c24_A 158 PEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLS-EMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEI 236 (286)
T ss_dssp CTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHH-HTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34556667777765333 2 1222 2223 3333333 4555777888889999999888887777643
Q ss_pred --HhhCCcchhhhhhccCCCChHHHHHHhcChhHHHHHH
Q psy15691 116 --LKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIY 152 (620)
Q Consensus 116 --~k~FDp~kaD~ift~~~~~P~WL~~mi~~~~WRsliy 152 (620)
....+|....++.... -+++.++++.+.|+.++=
T Consensus 237 ~~~~~~~p~~~~di~~~~---i~~~~~~l~~~~~~~~~~ 272 (286)
T 3c24_A 237 AMWFGYSPKVPSDAALRL---MEFAKDIVVKEDWREALN 272 (286)
T ss_dssp HHHTTSSCCC---CCSTT---HHHHHHHHBCTTGGGGGC
T ss_pred HHHHhhCCchhHHHHHHH---HHHHHHHHhccCHHHhcC
Confidence 3347887777777543 688888888888876543
No 2
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=29.81 E-value=67 Score=34.13 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHhccc---chHHHHHHHHH-HHhc--ccchhHHHHHHHHHHHHHHHHHHHHhcCcchhH
Q psy15691 441 PTHLALLDEVVTCHTF---LHHKVLQLFIE-LFES--KQDELEILVQLEMRKMLLDRMVNLLCRGCVVPV 504 (620)
Q Consensus 441 p~~l~LLdeIa~~Hp~---lr~~vL~lL~~-l~e~--~~~el~~l~~lelkr~llD~~V~Lls~G~VlPV 504 (620)
.+.+.||+..+.|.|. |.+-.+++|+. .+++ ....+.+- .-+.|...|++.|+.+|-
T Consensus 195 ~~lIRIlkDlc~R~~~w~pL~~waLELL~~~Ai~s~~~~~~l~~~-------~afRRVLElLAsGillp~ 257 (364)
T 4at7_A 195 KVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALN-------VAYRRCLQILAAGLFLPG 257 (364)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHHHHSSTTSSCCCHH-------HHHHHHHHHHHTTTTSTT
T ss_pred ceeehhhHHHHHhcCCcCCCCHHHHHHHHHHHHhcCCCCCCcCHH-------HHHHHHHHHHHhCcccCC
Confidence 4678999999999998 77888888886 4444 22234432 456678899999999983
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.01 E-value=1.7e+02 Score=24.96 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhcCcchh-HHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHhhhhhhcCccccc
Q psy15691 482 LEMRKMLLDRMVNLLCRGCVVP-VVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITG 556 (620)
Q Consensus 482 lelkr~llD~~V~Lls~G~VlP-Vl~~i~~~~~~~~lD~SLIRyFv~eVLeii~PPYS~eFv~~flpll~~~~i~~ 556 (620)
-.+|.++-+++..++ |.-=+ |++||-.+..+ ..|+. ..+.++-++...+ ...|+..+-.++.+..-+.
T Consensus 16 ~~lkpWI~kkv~e~L--G~eD~~lVd~i~~~l~~-~~dpk---~l~~~L~~fLd~~-a~~Fv~eLW~lL~~aq~s~ 84 (92)
T 1x4q_A 16 DELKPWIEKTVKRVL--GFSEPTVVTAALNCVGK-GMDKK---KAADHLKPFLDDS-TLRFVDKLFEAVEEGRSSR 84 (92)
T ss_dssp HHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHT-TCCHH---HHHHHHTTTTGGG-THHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHc-CCCHH---HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhCC
Confidence 457777777777776 44444 67788777765 67875 5566666666667 9999999999997655444
No 4
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=25.68 E-value=88 Score=29.41 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHHHHHHH---HhcCCCchhHHHHhcCCCCcccHHHH----HHHHhccCCCCh---hhHHHHHH
Q psy15691 252 LAQEITKCA---QQSGHDVTPIIMALNGAAFYPQANQA----LSSMISRNSLNP---ADITVLFR 306 (620)
Q Consensus 252 lsQele~~A---~~~g~~v~~i~~~l~~~~~yp~~~~a----i~smLs~~~l~p---aDI~~Ly~ 306 (620)
-++|+++.. +++|..-++|-+.|.+...-|++... |+.+|..+.+.| .|+..|.+
T Consensus 31 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~Lik 95 (153)
T 2xzm_O 31 TPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIK 95 (153)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHH
Confidence 456666664 56899999999999988888998766 788999988875 45555544
No 5
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=24.67 E-value=3.6e+02 Score=25.56 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=51.9
Q ss_pred cccHHHHHHHHHHcCCCh-------HHHHHHHHhh-hHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH--HhhC-
Q psy15691 51 EPGIFSQLKRYFQAGGNP-------EQVIELLSQN-YKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMI--LKTF- 119 (620)
Q Consensus 51 Ep~i~~~ik~yi~~gG~P-------~~vv~~Ls~~-Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li--~k~F- 119 (620)
++..+..++.+++.-|.+ -+.+-.|+.+ ..-...+.+.++++....|+++++..+++..-+.... .+..
T Consensus 133 ~~~~~~~~~~ll~~~G~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 212 (259)
T 2ahr_A 133 SQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSS 212 (259)
T ss_dssp CHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhCCCEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666666664432 1222222211 1113456788888899999999888777765555442 2323
Q ss_pred -Ccchh-hhhhccCCCChHHHHHHhcChhHHHHHH
Q psy15691 120 -DPKKA-DTIFTEEGETPAWLTEMIEHPTWRSLIY 152 (620)
Q Consensus 120 -Dp~ka-D~ift~~~~~P~WL~~mi~~~~WRsliy 152 (620)
+|... |.+++..+.+-..++.| ++...|..+.
T Consensus 213 ~~p~~l~~~~~~p~~~~~~~~~~l-~~~g~~~~~~ 246 (259)
T 2ahr_A 213 QSPHDFIDAICSPGGTTIAGLMEL-ERLGLTATVS 246 (259)
T ss_dssp SCHHHHHHHHCCTTSHHHHHHHHH-HHHTHHHHHH
T ss_pred CCHHHHHHhCCCCChhHHHHHHHH-HHCChHHHHH
Confidence 35555 44444333333333333 2334444443
No 6
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=24.13 E-value=79 Score=29.67 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHHHHHHHH---HhcCCCchhHHHHhcCCCCcccHHHH----HHHHhccCCCCh---hhHHHHHH
Q psy15691 252 LAQEITKCA---QQSGHDVTPIIMALNGAAFYPQANQA----LSSMISRNSLNP---ADITVLFR 306 (620)
Q Consensus 252 lsQele~~A---~~~g~~v~~i~~~l~~~~~yp~~~~a----i~smLs~~~l~p---aDI~~Ly~ 306 (620)
-++|+++.. +++|.+-++|-+.|.+...-|++... |+.+|..+.+.| .|+..|.+
T Consensus 29 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~Lik 93 (151)
T 3u5c_N 29 SSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIK 93 (151)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 456777664 46899999999999988878988776 888999888874 35555544
No 7
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.20 E-value=3.7e+02 Score=25.89 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhC----CCc---hhhHHHHHHHhhccchhhhh
Q psy15691 145 PTWRSLIYRLAEEY----PDC---LMLNFTIKLISDAGFQREIT 181 (620)
Q Consensus 145 ~~WRsliy~LaE~~----p~c---lmLnfaIk~IsdaG~q~EI~ 181 (620)
..|.....+|+++. +.. ..-.-.++-..-.||-.++.
T Consensus 156 ~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 156 EVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 46777777776632 321 23445555566688876654
No 8
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=23.09 E-value=3.5e+02 Score=24.29 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCChHHHHHHhc---ChhHHHHHHHH
Q psy15691 81 AVAQMANLVAEWLILGGV-NVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIE---HPTWRSLIYRL 154 (620)
Q Consensus 81 G~aqm~~ll~~WL~~~g~-~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~---~~~WRsliy~L 154 (620)
-..++=.+|.+|...... .+++| +.+..+|+++|. .=|=+|+..+. .||..+++ +..|+..+=++
T Consensus 37 ~l~evK~lL~~Wv~s~~~P~~~DV-~~l~~yL~~lVe-ek~Lek~~~vl-------k~l~rlv~~~~~~~W~~Ay~~I 105 (124)
T 3vu7_H 37 EFNDVKTLLREWITTISDPMEEDI-LQVVKYCTDLIE-EKDLEKLDLVI-------KYMKRLMQQSVESVWNMAFDFI 105 (124)
T ss_dssp SHHHHHHHHHHHHHHHCSCCHHHH-HHHHHHHHHHHH-TTCHHHHHHHH-------HHHHHHHHSCSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhh-cccHHHHHHHH-------HHHHHHHhcccccHHHHHHHHH
Confidence 346667888899975544 34556 667788999994 55788888776 78887774 35566655443
No 9
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=20.23 E-value=3.9e+02 Score=22.71 Aligned_cols=65 Identities=15% Similarity=0.327 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCChHHHHHHhcC---hhHHHHHHHH
Q psy15691 81 AVAQMANLVAEWLILGGVN-VTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEH---PTWRSLIYRL 154 (620)
Q Consensus 81 G~aqm~~ll~~WL~~~g~~-~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~~---~~WRsliy~L 154 (620)
...++=.++.+|..-...+ +++| +.+..+|+++|. .=|=+|+..+. .||..+|+. ..|+..+=++
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV-~~l~~yL~~lv~-~~~lek~~~vl-------k~l~rlv~~~~~~~W~~A~~~I 78 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDI-LQVVRYCTDLIE-EKDLEKLDLVI-------KYMKRLMQQSVESVWNMAFDFI 78 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHH-HHHHHHHHHHHH-TTCHHHHHHHH-------HHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhh-ccCHHHHHHHH-------HHHHHHHhcccccHHHHHHHHH
Confidence 3466778899999865543 4555 667788999994 55778888776 788777743 4566655443
No 10
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=19.55 E-value=5.3e+02 Score=23.72 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=48.8
Q ss_pred HHHHhhcCCCCccccccHHHHHHHHHHc-----CCCh--HHHHHHHHhhhHhHHHHHHHHHHHHHhcCCChHHHHHHHH-
Q psy15691 37 NECLEKFSTPDYIMEPGIFSQLKRYFQA-----GGNP--EQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVE- 108 (620)
Q Consensus 37 ~e~~~~l~~~DaIMEp~i~~~ik~yi~~-----gG~P--~~vv~~Ls~~Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e- 108 (620)
..+.+.|+..| +++.+.|+.-.+. +-+| ..+.+.|.+-|....-.+.-+...+..+..+|+..+++=+
T Consensus 55 ~~a~~~L~~~e----~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~R 130 (175)
T 4abx_A 55 AGGVELLSDGD----LNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEAR 130 (175)
T ss_dssp HHHHHHHTTSS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCc----chHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34444555432 4677766666663 3344 5677788888888888888888888877777776644433
Q ss_pred -HHHHHHHHhh
Q psy15691 109 -NHLKDMILKT 118 (620)
Q Consensus 109 -~~Lk~li~k~ 118 (620)
+.|+.+.+|+
T Consensus 131 L~~l~~L~RKy 141 (175)
T 4abx_A 131 LSALSKLKNKY 141 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 4455554443
Done!