Your job contains 1 sequence.
>psy15691
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR
YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD
PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI
TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS
LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPAD
ITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV
STGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVI
RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILV
QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPE
FVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVD
FVIEPKGTYGRRITEILTMQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15691
(620 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010416 - symbol:TH1 "TH1" species:7227 "Drosophil... 2004 3.2e-207 1
UNIPROTKB|F1NR08 - symbol:TH1L "Uncharacterized protein" ... 1713 2.2e-176 1
UNIPROTKB|Q5ZIQ8 - symbol:TH1L "Uncharacterized protein" ... 1713 2.2e-176 1
UNIPROTKB|Q8IXH7 - symbol:NELFCD "Negative elongation fac... 1713 2.2e-176 1
MGI|MGI:1926424 - symbol:Nelfcd "negative elongation fact... 1713 2.2e-176 1
UNIPROTKB|F1PIH1 - symbol:TH1L "Uncharacterized protein" ... 1712 2.8e-176 1
UNIPROTKB|F1MW69 - symbol:TH1L "Uncharacterized protein" ... 1705 1.6e-175 1
UNIPROTKB|A5GFY4 - symbol:TH1L "Negative elongation facto... 1703 2.5e-175 1
ZFIN|ZDB-GENE-040426-720 - symbol:nelfcd "negative elonga... 1666 2.1e-171 1
UNIPROTKB|A5GFY5 - symbol:TH1L "Negative elongation facto... 859 6.9e-86 1
DICTYBASE|DDB_G0268678 - symbol:DDB_G0268678 "putative ne... 790 1.4e-78 1
>FB|FBgn0010416 [details] [associations]
symbol:TH1 "TH1" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0007070
"negative regulation of transcription from RNA polymerase II
promoter during mitosis" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0032021 "NELF complex" evidence=IPI] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR006942 Pfam:PF04858 GO:GO:0017053
GO:GO:0022008 EMBL:AE014298 GO:GO:0006351 GO:GO:0003723 EMBL:U34925
GO:GO:0034244 GO:GO:0005703 GO:GO:0005705 GO:GO:0007070
GO:GO:0032021 EMBL:AJ238377 EMBL:AJ238378 EMBL:L01790 EMBL:AY051957
PIR:T13287 RefSeq:NP_573123.1 UniGene:Dm.3007 DIP:DIP-23874N
IntAct:Q24134 MINT:MINT-937993 STRING:Q24134 PaxDb:Q24134
EnsemblMetazoa:FBtr0074305 GeneID:32607 KEGG:dme:Dmel_CG9984
UCSC:CG9984-RA CTD:32607 FlyBase:FBgn0010416 eggNOG:NOG72470
GeneTree:ENSGT00390000001799 InParanoid:Q24134 KO:K15181
OMA:CKSNFIL OrthoDB:EOG4KSN0W PhylomeDB:Q24134 GenomeRNAi:32607
NextBio:779433 Bgee:Q24134 GermOnline:CG9984 PANTHER:PTHR12144
Uniprot:Q24134
Length = 578
Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
Identities = 388/549 (70%), Positives = 449/549 (81%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
+NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI +LS+NYKAVAQMANL+
Sbjct: 26 DNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLL 85
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLIL GV VTEVQAMVENHLK+MILK+FDPKKADTIFTEEGETP WLTEMI+H TWRS
Sbjct: 86 AEWLILAGVKVTEVQAMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRS 145
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
LIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVLKTSI FL + D
Sbjct: 146 LIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKFLNNPD 205
Query: 210 DWQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVTP 269
D +++ECA+MVCHGQHT E KGG +KRL+QEI K A Q+ +VTP
Sbjct: 206 DVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQEIIKYALQNNQNVTP 265
Query: 270 IIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELLT 329
I MALNG+A YPQA QAL+SM++RN+LNPADITVLFR YS QFLELL
Sbjct: 266 ITMALNGSAVYPQACQALTSMLTRNTLNPADITVLFRNYSGSDPPPIDLIRNPQFLELLV 325
Query: 330 DSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTK-QKSFNKDDLKTTIQAIEKVHS 388
D+LF+ GVK+NPEHKPKY++LLAYAS+V + K+ ++ NK++LK+TIQAIEK H+
Sbjct: 326 DALFRSGVKINPEHKPKYMFLLAYASAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHT 385
Query: 389 ICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLD 448
ICN + S ELIAE+ TL++CI+YPVV VGVIRW+E V EPSYFKL T+ PTHLA+LD
Sbjct: 386 ICNVDQGSTELIAELQTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLD 445
Query: 449 EVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYV 508
EV H L ++L L I LFESKQDELEILVQLEM+KM+LDRMVNLL RGCVVPV++Y+
Sbjct: 446 EVAAVHPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVPVLRYI 505
Query: 509 KQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVS 568
KQC DTDISLIRYFVTEVLE IT PY+PEFVQLFLP+VEN+EITGTMRG+G+NDPVS
Sbjct: 506 KQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEEITGTMRGEGDNDPVS 565
Query: 569 EFIVQTLEH 577
EFIV H
Sbjct: 566 EFIVHCKAH 574
>UNIPROTKB|F1NR08 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892
GO:GO:0032021 GeneTree:ENSGT00390000001799 OMA:CKSNFIL
PANTHER:PTHR12144 EMBL:AADN02019004 IPI:IPI00821543
Ensembl:ENSGALT00000039031 ArrayExpress:F1NR08 Uniprot:F1NR08
Length = 602
Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
Identities = 323/570 (56%), Positives = 428/570 (75%)
Query: 4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
DY + W E+ EV ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct: 24 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 83
Query: 64 AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
AGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+K
Sbjct: 84 AGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRK 143
Query: 124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
AD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+
Sbjct: 144 ADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV 203
Query: 184 STAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXE 242
STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HT E
Sbjct: 204 STACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQSMMSILAQE 263
Query: 243 SKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADIT 302
+GGS V+R+AQE+ + A + GHD + I +AL AA YP+A QAL +M+S+ +LNPADIT
Sbjct: 264 EQGGSAVRRIAQEVQRYAHEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADIT 323
Query: 303 VLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVST 362
VLF++++S FL+L SLFKPG K+N +HK KYI++LAYA+SV E+
Sbjct: 324 VLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVEM-- 381
Query: 363 GKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIR 421
KK K+ S NKD+LK+T +AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++
Sbjct: 382 WKKNKRVSINKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLK 441
Query: 422 WVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQ 481
WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++ +L+++ Q
Sbjct: 442 WVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQ 501
Query: 482 LEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEF 541
LE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +F
Sbjct: 502 LELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDF 561
Query: 542 VQLFLPIVENDEITGTMRGDGENDPVSEFI 571
VQLFLPI+EN+ I GT++ +GE+DPV+EFI
Sbjct: 562 VQLFLPILENESIAGTIKTEGEHDPVTEFI 591
>UNIPROTKB|Q5ZIQ8 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892
GO:GO:0032021 eggNOG:NOG72470 GeneTree:ENSGT00390000001799
KO:K15181 PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597
OrthoDB:EOG4V170G HOGENOM:HOG000231762 EMBL:AADN02019004
EMBL:AJ720726 IPI:IPI00572055 RefSeq:NP_001006294.1
UniGene:Gga.21932 STRING:Q5ZIQ8 Ensembl:ENSGALT00000012086
GeneID:419312 KEGG:gga:419312 InParanoid:Q5ZIQ8 NextBio:20822393
Uniprot:Q5ZIQ8
Length = 583
Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
Identities = 323/570 (56%), Positives = 428/570 (75%)
Query: 4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
DY + W E+ EV ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct: 5 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 64
Query: 64 AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
AGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+K
Sbjct: 65 AGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRK 124
Query: 124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
AD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+
Sbjct: 125 ADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV 184
Query: 184 STAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXE 242
STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HT E
Sbjct: 185 STACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQSMMSILAQE 244
Query: 243 SKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADIT 302
+GGS V+R+AQE+ + A + GHD + I +AL AA YP+A QAL +M+S+ +LNPADIT
Sbjct: 245 EQGGSAVRRIAQEVQRYAHEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADIT 304
Query: 303 VLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVST 362
VLF++++S FL+L SLFKPG K+N +HK KYI++LAYA+SV E+
Sbjct: 305 VLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVEM-- 362
Query: 363 GKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIR 421
KK K+ S NKD+LK+T +AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++
Sbjct: 363 WKKNKRVSINKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLK 422
Query: 422 WVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQ 481
WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++ +L+++ Q
Sbjct: 423 WVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQ 482
Query: 482 LEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEF 541
LE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +F
Sbjct: 483 LELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDF 542
Query: 542 VQLFLPIVENDEITGTMRGDGENDPVSEFI 571
VQLFLPI+EN+ I GT++ +GE+DPV+EFI
Sbjct: 543 VQLFLPILENESIAGTIKTEGEHDPVTEFI 572
>UNIPROTKB|Q8IXH7 [details] [associations]
symbol:NELFCD "Negative elongation factor C/D" species:9606
"Homo sapiens" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR006942 Pfam:PF04858 Reactome:REACT_116125 GO:GO:0045892
GO:GO:0016032 GO:GO:0006368 EMBL:AL109840 Reactome:REACT_1788
GO:GO:0050434 Reactome:REACT_1892 GO:GO:0032021 eggNOG:NOG72470
KO:K15181 OMA:CKSNFIL PANTHER:PTHR12144 EMBL:AJ238374 EMBL:AJ238375
EMBL:AJ238379 EMBL:AF161479 EMBL:AK001316 EMBL:AK023310
EMBL:AK023927 EMBL:AK293410 EMBL:BC014952 IPI:IPI00164949
IPI:IPI00387090 IPI:IPI00759539 RefSeq:NP_945327.2
UniGene:Hs.517148 ProteinModelPortal:Q8IXH7 DIP:DIP-34061N
IntAct:Q8IXH7 MINT:MINT-260753 STRING:Q8IXH7 PhosphoSite:Q8IXH7
DMDM:38372376 PaxDb:Q8IXH7 PRIDE:Q8IXH7 DNASU:51497
Ensembl:ENST00000344018 Ensembl:ENST00000460601 GeneID:51497
KEGG:hsa:51497 UCSC:uc002yag.3 CTD:51497 GeneCards:GC20P057556
H-InvDB:HIX0138057 HGNC:HGNC:15934 MIM:605297 neXtProt:NX_Q8IXH7
PharmGKB:PA38055 HOVERGEN:HBG052597 InParanoid:Q8IXH7
OrthoDB:EOG4V170G PhylomeDB:Q8IXH7 GenomeRNAi:51497 NextBio:55171
ArrayExpress:Q8IXH7 Bgee:Q8IXH7 Genevestigator:Q8IXH7
GermOnline:ENSG00000101158 Uniprot:Q8IXH7
Length = 590
Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
Identities = 324/573 (56%), Positives = 429/573 (74%)
Query: 1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
M++DY W E+ EV ECL KFST DYIMEP IF+ LKR
Sbjct: 10 MDEDYYGSAAE-WGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68
Query: 61 YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
YFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FD
Sbjct: 69 YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD 128
Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
P+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EI
Sbjct: 129 PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI 188
Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXX 239
TS+STA QQ+EVFSRVL+TS++ L+ ++ + ++ E AKMVCHG+HT
Sbjct: 189 TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVL 248
Query: 240 XXESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPA 299
E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +LNPA
Sbjct: 249 AQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPA 308
Query: 300 DITVLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE 359
DITVLF++++S FL+L SLFKPG ++N +HK KYI++LAYA+SV E
Sbjct: 309 DITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVE 368
Query: 360 VSTGKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVG 418
T KK K+ S NKD+LK+T +A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++G
Sbjct: 369 --TWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMG 426
Query: 419 VIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEI 478
V++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++ +L++
Sbjct: 427 VLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDV 486
Query: 479 LVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYT 538
+ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT
Sbjct: 487 MEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYT 546
Query: 539 PEFVQLFLPIVENDEITGTMRGDGENDPVSEFI 571
+FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct: 547 SDFVQLFLPILENDSIAGTIKTEGEHDPVTEFI 579
>MGI|MGI:1926424 [details] [associations]
symbol:Nelfcd "negative elongation factor complex member
C/D, Th1l" species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006942 Pfam:PF04858
MGI:MGI:1926424 GO:GO:0045892 GO:GO:0006351 GO:GO:0032021
eggNOG:NOG72470 GeneTree:ENSGT00390000001799 KO:K15181
PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597 OrthoDB:EOG4V170G
EMBL:AJ238741 EMBL:AJ238742 EMBL:AJ238743 EMBL:AK010360
EMBL:AK049418 EMBL:AL844534 EMBL:BC006959 EMBL:BC031747
IPI:IPI00395078 RefSeq:NP_065605.2 UniGene:Mm.271709 STRING:Q922L6
PhosphoSite:Q922L6 PaxDb:Q922L6 PRIDE:Q922L6
Ensembl:ENSMUST00000109075 GeneID:57314 KEGG:mmu:57314
UCSC:uc008ofc.1 HOGENOM:HOG000231762 ChiTaRS:TH1L NextBio:313663
Bgee:Q922L6 CleanEx:MM_TH1L Genevestigator:Q922L6
GermOnline:ENSMUSG00000016253 Uniprot:Q922L6
Length = 591
Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
Identities = 322/544 (59%), Positives = 422/544 (77%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 39 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 98
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 99 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 158
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 159 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 218
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + ++ E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 219 ENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDAS 278
Query: 269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELL 328
I +AL AA YP+A QAL +M+SR +LNPADITVLF++++S FL+L
Sbjct: 279 QITLALGTAASYPRACQALGAMLSRGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLF 338
Query: 329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
SLFKPG K+N +HK KYI++LAYA+SV E T KK K+ S KD+LK+T +AIE VH+
Sbjct: 339 MQSLFKPGAKINQDHKHKYIHILAYAASVVE--TWKKNKRVSIGKDELKSTSKAIETVHN 396
Query: 389 IC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
+C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALL
Sbjct: 397 LCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALL 456
Query: 448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
DE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG V+PVV Y
Sbjct: 457 DEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSY 516
Query: 508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ +GE+DPV
Sbjct: 517 IRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKAEGEHDPV 576
Query: 568 SEFI 571
+EFI
Sbjct: 577 TEFI 580
>UNIPROTKB|F1PIH1 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634
GO:GO:0045892 GeneTree:ENSGT00390000001799 OMA:CKSNFIL
PANTHER:PTHR12144 EMBL:AAEX03014054 Ensembl:ENSCAFT00000019342
Uniprot:F1PIH1
Length = 564
Score = 1712 (607.7 bits), Expect = 2.8e-176, P = 2.8e-176
Identities = 320/546 (58%), Positives = 424/546 (77%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 10 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 69
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 70 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 129
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 130 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 189
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + ++ E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 190 ENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDAS 249
Query: 269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELL 328
I +AL AA YP+A QAL +M+S+ +LNPADITVLF++++S FL+L
Sbjct: 250 QITLALGTAASYPRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLF 309
Query: 329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
SLFKPG ++N +HK KYI++LAYA+SV E T KK K+ NKD+LK+T +A+E VH+
Sbjct: 310 MQSLFKPGARINQDHKHKYIHILAYAASVVE--TWKKNKRVGINKDELKSTSKAVETVHN 367
Query: 389 IC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
+C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALL
Sbjct: 368 LCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALL 427
Query: 448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
DE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG V+PVV Y
Sbjct: 428 DEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSY 487
Query: 508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ +GE+DPV
Sbjct: 488 IRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPV 547
Query: 568 SEFIVQ 573
+EFIV+
Sbjct: 548 TEFIVK 553
>UNIPROTKB|F1MW69 [details] [associations]
symbol:TH1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032021 "NELF complex" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000001799 OMA:CKSNFIL PANTHER:PTHR12144
EMBL:DAAA02036315 IPI:IPI01003013 Ensembl:ENSBTAT00000025006
Uniprot:F1MW69
Length = 600
Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
Identities = 319/544 (58%), Positives = 423/544 (77%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 48 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 107
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 108 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 167
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 168 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 227
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + ++ E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 228 ENLEKNLPEFAKMVCHGEHTYLFAQALMSVLAQEEQGGSAVRRIAQEVQRFAQERGHDAS 287
Query: 269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELL 328
I +AL AA YP+A QAL +M+S+ +LNPADITVLF++++S FL+L
Sbjct: 288 QITLALGTAASYPRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLF 347
Query: 329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
SLFKPG ++N +HK KYI++LAYA+SV E T KK K+ S NKD+LK+T +A+E VH+
Sbjct: 348 MQSLFKPGARINQDHKHKYIHILAYAASVVE--TWKKNKRVSINKDELKSTSKAVETVHN 405
Query: 389 IC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
+C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALL
Sbjct: 406 LCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALL 465
Query: 448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
DE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG V+PVV Y
Sbjct: 466 DEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSY 525
Query: 508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
+++C ++ DTDISLIR+FVTEVL+ I PPYT +FVQLFLPI+END I GT++ +GE+DPV
Sbjct: 526 IRKCLEKLDTDISLIRHFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPV 585
Query: 568 SEFI 571
+EFI
Sbjct: 586 TEFI 589
>UNIPROTKB|A5GFY4 [details] [associations]
symbol:TH1L "Negative elongation factor D" species:9823
"Sus scrofa" [GO:0032021 "NELF complex" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634 GO:GO:0045892
GO:GO:0006351 eggNOG:NOG72470 GeneTree:ENSGT00390000001799
KO:K15181 PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597
OrthoDB:EOG4V170G HOGENOM:HOG000231762 EMBL:CR956646
RefSeq:NP_001107170.1 UniGene:Ssc.12022 STRING:A5GFY4
Ensembl:ENSSSCT00000008248 Ensembl:ENSSSCT00000034403
GeneID:100134985 KEGG:ssc:100134985 ArrayExpress:A5GFY4
Uniprot:A5GFY4
Length = 590
Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
Identities = 323/573 (56%), Positives = 428/573 (74%)
Query: 1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
M++DY W E+ EV ECL KFST DYIMEP IF+ LKR
Sbjct: 10 MDEDYFGSAAE-WGDEADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68
Query: 61 YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
YFQAGG+PE VI+LLS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FD
Sbjct: 69 YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD 128
Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
P+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EI
Sbjct: 129 PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI 188
Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXX 239
TS+STA QQ+EVFSRVL+TS++ L+ ++ + + E AKMVCHG+HT
Sbjct: 189 TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKHLPEFAKMVCHGEHTYLFAQAMMSVL 248
Query: 240 XXESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPA 299
E +GGS V+R+AQE+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +LNPA
Sbjct: 249 AQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPA 308
Query: 300 DITVLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE 359
DITVLF++++S FL+L SLFKPG ++N +HK KYI++LAYA+SV E
Sbjct: 309 DITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVE 368
Query: 360 VSTGKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVG 418
T KK K+ S NKD+LK+T +A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++G
Sbjct: 369 --TWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMG 426
Query: 419 VIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEI 478
V++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH LH +VLQL ++LFE++ +L++
Sbjct: 427 VLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDV 486
Query: 479 LVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYT 538
+ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I PPYT
Sbjct: 487 MEQLELKKTLLDRMVHLLSRGHVLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVIAPPYT 546
Query: 539 PEFVQLFLPIVENDEITGTMRGDGENDPVSEFI 571
+FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct: 547 SDFVQLFLPILENDSIAGTIKTEGEHDPVTEFI 579
>ZFIN|ZDB-GENE-040426-720 [details] [associations]
symbol:nelfcd "negative elongation factor complex
member C/D" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006942 Pfam:PF04858
ZFIN:ZDB-GENE-040426-720 GO:GO:0005634 GO:GO:0045892
eggNOG:NOG72470 KO:K15181 PANTHER:PTHR12144 CTD:51497
HOVERGEN:HBG052597 OrthoDB:EOG4V170G HOGENOM:HOG000231762
EMBL:BC045357 IPI:IPI00770521 RefSeq:NP_957484.1 UniGene:Dr.115420
STRING:Q7ZVZ0 GeneID:394165 KEGG:dre:394165 InParanoid:Q7ZVZ0
NextBio:20815113 ArrayExpress:Q7ZVZ0 Uniprot:Q7ZVZ0
Length = 579
Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
Identities = 313/540 (57%), Positives = 416/540 (77%)
Query: 34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWL 93
+V +CL+KFS+ DYIMEP +F+ LK YFQAGG+PE VI+LLS+NY AVAQ NL+AEWL
Sbjct: 31 KVQEDCLQKFSSRDYIMEPTVFNTLKSYFQAGGSPEHVIQLLSENYSAVAQTVNLLAEWL 90
Query: 94 ILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYR 153
I GV +VQ VENHLK +++K FDP+KAD+IFT EGETPAWL +MI H TWR L Y+
Sbjct: 91 IQMGVEPAQVQERVENHLKSLLIKHFDPQKADSIFTVEGETPAWLEQMIAHTTWRDLFYK 150
Query: 154 LAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD-DWQ 212
LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ + + +
Sbjct: 151 LAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATLLDGGEQNLE 210
Query: 213 SSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVTPIIM 272
++ E AKMVCHG+HT E +GGS ++R+ QE+ K A + GHD + I +
Sbjct: 211 KNLPEFAKMVCHGEHTYLFAQAMMSILAQEEQGGSAMRRIGQEVQKYAHERGHDASQITL 270
Query: 273 ALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELLTDSL 332
AL AA YP+A QAL +M+S+ +LNPADITVLF+++SS FL+L SL
Sbjct: 271 ALGTAAAYPRACQALGAMLSKGALNPADITVLFKMFSSMDPPPVELIRVPAFLDLFMQSL 330
Query: 333 FKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSIC-N 391
FKPG K+N +HK KYI++LAYA+SV E T KK K+ + NKD+LK+T +AIE VH++C N
Sbjct: 331 FKPGAKINQDHKHKYIHILAYAASVVE--TWKKNKRVNINKDELKSTSKAIETVHNLCCN 388
Query: 392 SSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVV 451
+K + EL+A ++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALLDE+
Sbjct: 389 ENKGATELVAGLSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEIS 448
Query: 452 TCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQC 511
TCH LH +VLQL I+LFE++ +L+++ Q+E++K LLDRMV+LL RG V+PVV Y+++C
Sbjct: 449 TCHQLLHPQVLQLLIKLFETEHSQLDVMEQMELKKTLLDRMVHLLSRGYVLPVVGYIRKC 508
Query: 512 WQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFI 571
++ +TDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT+R +GENDPV+EFI
Sbjct: 509 LEKLNTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIRTEGENDPVAEFI 568
>UNIPROTKB|A5GFY5 [details] [associations]
symbol:TH1L "Negative elongation factor D" species:9823
"Sus scrofa" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634 GO:GO:0045892
GeneTree:ENSGT00390000001799 PANTHER:PTHR12144 HOVERGEN:HBG052597
EMBL:CR956646 UniGene:Ssc.12022 STRING:A5GFY5
Ensembl:ENSSSCT00000033175 ArrayExpress:A5GFY5 Uniprot:A5GFY5
Length = 291
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 163/270 (60%), Positives = 204/270 (75%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ NL+
Sbjct: 22 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 81
Query: 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR
Sbjct: 82 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 141
Query: 150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++ L+ +
Sbjct: 142 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 201
Query: 210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
+ + + E AKMVCHG+HT E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct: 202 ENLEKHLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDAS 261
Query: 269 PIIMALNGAAFYPQANQALSSMISRNSLNP 298
I +AL AA YP+A QAL +M+S+ +LNP
Sbjct: 262 QITLALGTAASYPRACQALGAMLSKGALNP 291
>DICTYBASE|DDB_G0268678 [details] [associations]
symbol:DDB_G0268678 "putative negative transcription
elongation factor NELF subunit" species:44689 "Dictyostelium
discoideum" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006942 Pfam:PF04858 dictyBase:DDB_G0268678
GO:GO:0005634 GO:GO:0045892 EMBL:AAFI02000004 eggNOG:NOG72470
KO:K15181 PANTHER:PTHR12144 RefSeq:XP_646857.1
EnsemblProtists:DDB0232149 GeneID:8616540 KEGG:ddi:DDB_G0268678
InParanoid:Q55F13 OMA:ECFELIA ProtClustDB:CLSZ2431474
Uniprot:Q55F13
Length = 660
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 179/529 (33%), Positives = 284/529 (53%)
Query: 29 MENPQEVLNE-CLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMAN 87
++ P +++ E C PD IM S +K Y GG P+ VI LS++Y+ AQM N
Sbjct: 79 LKTPTDLIKEKCESSLQQPDSIMSIEASSLMKEYITVGGRPQDVITFLSESYRGYAQMCN 138
Query: 88 LVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
L+ WL + G+ ++Q NHLK++I+ FDPK ADTIFT P WL EMI W
Sbjct: 139 LLCYWLKIAGIPEEQIQTQFSNHLKEIIINKFDPKVADTIFTSSSTPPHWLDEMIVDSQW 198
Query: 148 RSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
RSLIY+L+EE+ +CLMLNF I+ ISD+G+Q EI S+STA+ VF++VL S+++ +
Sbjct: 199 RSLIYQLSEEHKNCLMLNFIIQRISDSGYQNEIASLSTASTYYRVFNKVLFDSLADLVTL 258
Query: 208 SD-DWQSSVEECAKMVCHGQHTXXXXXXXXXXXXXES-KGGSKVKRLAQEITKCAQQSGH 265
+ ++ ++E K C QHT + + +KR++QE+ A +
Sbjct: 259 DEISFRQQLDEFKKSCCQHQHTYLYAQATIQNLIKNNPQKAYNLKRISQELEIEATKKNK 318
Query: 266 DVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFL 325
I + ++ + YP + +++S++ N+ DI L+ Y+ L
Sbjct: 319 IAQRISLMMSNISQYPLISSSITSLLMSNTTTTGDIIKLYNEYTKAQPPPVDFLRYPNLL 378
Query: 326 ELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEK 385
ELL LF PG + HK K+IYL+ Y SV +++ + +K N K +AIE
Sbjct: 379 ELLLSDLFCPGKVIQSVHKSKWIYLVTY--SVC-INSSSSSNEKDNNV--FKDITRAIEI 433
Query: 386 VHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEP----SYFKLCTEHTP 441
VH+IC S+ +EL + + TL + +P++S+G+++W++ +T+ SY LC P
Sbjct: 434 VHNICQSNPLGSELQSVVGTLKDHLDFPIISMGIMQWIKHNLTDTTNLSSYNTLCV---P 490
Query: 442 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 501
+L L ++ H VL + + FE + +LE L LEMRK ++D +V L G V
Sbjct: 491 IYLDFLRDICLRHPLHRSVVLNILVSHFEVEAQDLESLAILEMRKNVIDNIVYLFSCGYV 550
Query: 502 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVE 550
+PV+ ++ W D SL RYF+ +VL+ I PPY+ F+ I++
Sbjct: 551 IPVLDTIES-WAP-KIDPSLTRYFINQVLDIIEPPYSQSFMDKMKSIIK 597
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 620 581 0.00082 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 620 (66 KB)
Total size of DFA: 347 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.76u 0.16s 48.92t Elapsed: 00:00:02
Total cpu time: 48.76u 0.16s 48.92t Elapsed: 00:00:02
Start: Thu Aug 15 13:59:14 2013 End: Thu Aug 15 13:59:16 2013