RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15691
(620 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 95.5 bits (237), Expect = 2e-20
Identities = 101/591 (17%), Positives = 175/591 (29%), Gaps = 224/591 (37%)
Query: 164 LNFTIKLISDAGFQREITSISTAAQQI-EVFSRVLKTSISNFLESSDDWQSSVEE-CAKM 221
L + L+ T+ A Q+ E F+++L F ++DD ++ E K
Sbjct: 16 LEHVL-LVP--------TASFFIASQLQEQFNKILPEPTEGF--AADDEPTTPAELVGKF 64
Query: 222 VCH------GQHTYVYSQVLLQVL-SLESK--GGSKVKRLAQEITKCAQQSGHDVTPIIM 272
+ + + QVL L E+ G+ + LA ++ + + +I
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI- 123
Query: 273 ALNGAAFYPQANQALSSMISRNS---L------NPADITVLF--------------RLYS 309
+ A + S L A + +F LY
Sbjct: 124 ----KNYI-TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 310 SPDPPPIDLIRI--PQFLELL-----TDSLFKPGVKL-----NPEHKPKYIYLLAYASSV 357
+ DLI+ EL+ + +F G+ + NP + P YLL+ S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 358 ----------YEVSTGKKTKQKSFNKDDLKTTIQAIEKVH----------SICNSSKSSN 397
Y V+ K F +L++ ++ H + +S +S
Sbjct: 239 PLIGVIQLAHYVVTA----KLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFF 293
Query: 398 ELIAE-ITTLFHC-IR----YPVVSVGVIRWVECTVTEPSYFKLCTEH---TPTH-LALL 447
+ + IT LF +R YP S+ PS + E+ P+ L++
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSL-----------PPSILEDSLENNEGVPSPMLSIS 342
Query: 448 DEVVTCHTFLHHKVLQLFIE-----LFESKQDELEILVQLEMRKMLLDRMVNLLCRG--- 499
+ L + +Q ++ L KQ + + L VN G
Sbjct: 343 N--------LTQEQVQDYVNKTNSHLPAGKQ----VEISL----------VN----GAKN 376
Query: 500 CVV---PVVKYVKQCWQRGDTDISLIRYFVTEVLEAITP--------PYT---PEFVQLF 545
VV P SL + +A P P++ +F F
Sbjct: 377 LVVSGPP---------------QSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 546 LPI---------------VENDEITGTMR-------------GDGEN-----DPVSEFIV 572
LP+ + D + + DG + +SE IV
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 573 QTLEHE---WHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYG-----RRITE 615
+ W K H +DF P G G R +
Sbjct: 481 DCIIRLPVKWETTTQFK------ATHI--LDF--GPGGASGLGVLTHRNKD 521
Score = 89.0 bits (220), Expect = 2e-18
Identities = 90/512 (17%), Positives = 156/512 (30%), Gaps = 171/512 (33%)
Query: 27 DPMENPQ--EVLNECLEKFSTPDYIMEPGI------------------FSQLKRYFQAGG 66
+P + Q +VLN CL +F Y+ I +K Y A
Sbjct: 73 EPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 67 NPEQVIELLSQN--YKAV-AQMANLVAEWLILGGVNVTEVQAMVENHLKDM--ILKTFDP 121
++ + S + ++AV A LVA I GG Q +++ +++ + +T+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVA---IFGG------QGNTDDYFEELRDLYQTYHV 182
Query: 122 KKADTIFTEEGETPAWLTEMIEHPTWRSLIY----------RLAEEYPDCLMLN---FTI 168
D I ET L+E+I ++ PD L +
Sbjct: 183 LVGDLI-KFSAET---LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 169 KLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLE-------------------SSD 209
LI + ++ V +++L + +D
Sbjct: 239 PLIG-------VIQLA----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 210 DWQSSVEECAKMV-------CHGQHTYVYSQVLLQVL--SLESKGGSK-----VKRLAQE 255
W+S K + Y + + +L SLE+ G + L QE
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 256 ITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMI-SRNSL----NPADITVL-FRLYS 309
V + N + P Q S++ +L P + L L
Sbjct: 348 ----------QVQDYVNKTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 310 SPDPPPIDLIRIP----------QFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE 359
+ P +D RIP +FL + + P H LL AS +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVAS-----------PFHSH----LLVPASDL-- 438
Query: 360 VSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSS---KSSNELIAEITTLFHCIRYPVVS 416
++ SFN D++ V+ + S S + I
Sbjct: 439 INKDLVKNNVSFNAKDIQIP------VYDTFDGSDLRVLSGSISERI------------- 479
Query: 417 VGVIRWVECTVTEPSYFKLCTEHTPTHLALLD 448
V+C + P ++ T+ TH +LD
Sbjct: 480 ------VDCIIRLPVKWETTTQFKATH--ILD 503
Score = 67.0 bits (163), Expect = 1e-11
Identities = 91/558 (16%), Positives = 173/558 (31%), Gaps = 192/558 (34%)
Query: 44 STPDYIMEPGIFSQLKRYFQ----------AGGN-PEQVIELLSQ--NY-------KAVA 83
T + I SQL+ F A + P EL+ + Y V
Sbjct: 23 PTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 84 QMANLVAEWL------ILGGVNVTEVQAMVENHLKDM---------ILKTF--------- 119
Q ++ L L G ++ A+ L++ ++K +
Sbjct: 79 QFDQVLNLCLTEFENCYLEG---NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 120 -DPKKAD---------------TIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLM 163
KK++ IF +G T + E+ + +Y + Y
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-------LY---QTYHV--- 182
Query: 164 LNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES-----SDDWQSSVEEC 218
LI + + I T +VF++ L +I +LE+ D+ S+
Sbjct: 183 --LVGDLIKFSA-ETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLLSIPIS 237
Query: 219 AKMVCHGQ--HTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMAL-- 274
++ Q H YV V ++L +++ + T +Q ++ A+
Sbjct: 238 CPLIGVIQLAH-YV---VTAKLLGFTP---GELRSYLKGATGHSQG-------LVTAVAI 283
Query: 275 ----NGAAFYPQANQALSSMI----------SRNSLNPADITVLFRLYSSPD-----PPP 315
+ +F+ +A++ + SL P+ + S + P P
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE------DSLENNEGVPSP 337
Query: 316 IDLIR-IPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKD 374
+ I + Q E + D + K L P K I L+ A ++ V +G
Sbjct: 338 MLSISNLTQ--EQVQDYVNKTNSHL-PAGKQVEISLVNGAKNL--VVSG--------PPQ 384
Query: 375 DLKTTIQAIEKVH--SICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSY 432
L + K S + S+ R S R++ V P
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIP-----------FSERKLKFSN---RFL--PVASP-- 426
Query: 433 FKLCTEHTPTHLALLDEVVTCHTFLHHKVLQ-LFIELFESKQDELEILV-----QLEMRK 486
F H+ LL + + L +++I V ++R
Sbjct: 427 F-----HSH----LLVPAS-------DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 487 M---LLDRMVNLLCRGCV 501
+ + +R+V+ + R V
Sbjct: 471 LSGSISERIVDCIIRLPV 488
Score = 35.4 bits (81), Expect = 0.077
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 36/141 (25%)
Query: 260 AQQSG-----HDVTPIIMAL-NGAAFYPQANQALS-SMISRNSLNPADITVLF------- 305
+Q+ G + + + N A + + S I N NP ++T+ F
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN--NPVNLTIHFGGEKGKR 1683
Query: 306 --RLYSS------PDPPPIDLIRIPQFLELLTDSLFK-PGVKLNPEHKPKY----IYLLA 352
YS+ D + E T F+ L+ ++ + L+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS---ATQFTQPALTLME 1740
Query: 353 YASSVYEV--STGKKTKQKSF 371
A +E S G +F
Sbjct: 1741 KA--AFEDLKSKGLIPADATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 4e-13
Identities = 76/518 (14%), Positives = 166/518 (32%), Gaps = 138/518 (26%)
Query: 28 PMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQV--IELLSQNYKAVAQM 85
P L + L + ++ G+ G+ + +++ +YK +M
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGV----------LGSGKTWVALDVC-LSYKVQCKM 180
Query: 86 ANLVAEWLILGGVNVTE-VQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEH 144
+ WL L N E V M++ +L DP +T + + + I
Sbjct: 181 DFKIF-WLNLKNCNSPETVLEMLQK-----LLYQIDPN-----WTSRSDHSSNIKLRIHS 229
Query: 145 PTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVF---SRVLKT-- 199
++ Y +CL L+ + + A+ F ++L T
Sbjct: 230 IQAELRRLLKSKPYENCL-------LVLL-----NVQN----AKAWNAFNLSCKILLTTR 273
Query: 200 --SISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257
+++FL ++ S++ + + + +LL+ L + + L +E+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYL------DCRPQDLPREVL 323
Query: 258 KCAQQSGHDVTPIIMALNGAA---------FYPQANQ-ALSSMI--SRNSLNPADITVLF 305
P +++ + + N L+++I S N L PA+ +F
Sbjct: 324 TTN--------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 306 RLYS--SPDPP-PIDLIRI------PQFLELLTDSLFKPG-VKLNPEHKPKYIYLLAYAS 355
S P P L+ + + ++ + L K V+ P+ I +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-- 433
Query: 356 SVYEVSTGKKTKQKSFNKDDL-KTTIQAIEKVHSICNSSKSSNEL--------------- 399
+ K K N+ L ++ + + + L
Sbjct: 434 ---------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 400 -IAEITTLFHC-----------IRYPVVSVGVIRWVECTVTE-PSYFKLCTEHTPTHLAL 446
E TLF IR+ + + T+ + Y ++ P + L
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 447 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEM 484
++ ++ FL ++ L SK + L+++ +
Sbjct: 545 VNAIL---DFLP----KIEENLICSKYTD---LLRIAL 572
Score = 61.4 bits (148), Expect = 6e-10
Identities = 65/466 (13%), Positives = 138/466 (29%), Gaps = 139/466 (29%)
Query: 185 TAAQQIEVFSRVLKTSISNFLESSD-----DWQSSV---EECAKMVCHGQHTYVYSQVLL 236
T Q + + +L F+++ D D S+ EE ++ S L
Sbjct: 11 TGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLR 66
Query: 237 QVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSL 296
+L SK V++ +E ++ +N Y L S I
Sbjct: 67 LFWTLLSKQEEMVQKFVEE---------------VLRIN----YK----FLMSPIKTEQR 103
Query: 297 NPADITVLF-----RLYSSPDP-PPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYL 350
P+ +T ++ RLY+ ++ R+ +L+ L +L +L P K + +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQALL----ELRPA---KNVLI 155
Query: 351 ----------LA------------YASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
+A ++ ++ ++ + K Q S
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 389 ICNSSKS----SNELIAEITTLFHCIRYP--------VVSVGVIRW--VECT--VT--EP 430
+ S + + + AE+ L Y V + + C +T
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 431 SYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRK---- 486
+ T TH++L + T +V L ++ + + +L E+
Sbjct: 276 QVTDFLSAATTTHISLDHHSM---TLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPR 328
Query: 487 ---MLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTD--ISLIRYFVTEVLEAITPPYTPEF 541
++ + + + L W+ + D ++I L + P E+
Sbjct: 329 RLSIIAESIRDGLAT------WDN----WKHVNCDKLTTIIESS----LNVLEP---AEY 371
Query: 542 VQLF--LPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDD 585
++F L + + L W +
Sbjct: 372 RKMFDRLSVFPPSA------------HIPT---ILLSLIWFDVIKS 402
Score = 29.4 bits (65), Expect = 5.0
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 24/87 (27%)
Query: 516 DTDISLIRYFVTEVLEAITPPYTPEF----VQLFLPIV----ENDEITG----------- 556
D + +Y ++L + F VQ + E D I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 557 --TMRGDGENDPVSEFIVQTLE--HEW 579
T+ E V +F+ + L +++
Sbjct: 68 FWTLLSKQEE-MVQKFVEEVLRINYKF 93
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Length = 146
Score = 32.9 bits (75), Expect = 0.12
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 27/115 (23%)
Query: 504 VVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTP--------EFVQLFL--------- 546
V++ + W D + R +T +I F +
Sbjct: 15 VLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEVV 74
Query: 547 ---PIVENDEI------TGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCW 592
VE D + TG G P S +V + L D ++ +
Sbjct: 75 VENVTVEGDNVVVQARLTGAQDGPFLGVPPSGQMVDVPDVTLFTLADG-QVIEMR 128
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 32.5 bits (74), Expect = 0.50
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 10/73 (13%)
Query: 546 LPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQC--WPVHFSSVDFVI 603
+ +RG I LE + YQ + +V+
Sbjct: 425 TGFTYPELYLFYLRG--------AQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVL 476
Query: 604 EPKGTYGRRITEI 616
+P G R+ E+
Sbjct: 477 DPDAPTGERVREV 489
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.66
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 12/31 (38%)
Query: 285 QALSSMISRNSLNPADITVLFRLYSSPDPPP 315
QAL + + SL +LY+ D P
Sbjct: 20 QALKKL--QASL---------KLYA-DDSAP 38
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold,
farnesyl diphosphate, metal-binding, lyase, magnesium;
HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A
3lgk_A 3lg5_A*
Length = 382
Score = 31.7 bits (71), Expect = 0.81
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Query: 467 ELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVK--QCWQRGDTDISLI-- 522
E E + + +R + + V V + W
Sbjct: 299 RRVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESG 358
Query: 523 RYFVTEVLEAITPPYTPE 540
RY V + TPPY
Sbjct: 359 RYMVDSWDDRSTPPYVNN 376
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 30.2 bits (69), Expect = 2.0
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
VT VE L I + + P + EE + + ++PTW
Sbjct: 43 VTATDQKVEKMLITSIKEKY-PS--HSFIGEESVAAGEKSILTDNPTW 87
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 30.0 bits (68), Expect = 2.5
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 265 HDVTPIIMALN---GAAFYPQAN--QALSSMISRN--SLNPADITVLFRLYSSPDPPPID 317
V P+++ + G+ F A+ +S N +L + + ++Y P
Sbjct: 310 IKV-PVLVGDDTDEGSNFAYNASSSADVSRFFKNNYPNLTSQQLNEINQVYPRGKLLPRH 368
Query: 318 LIRIPQFLELLTDSLFK-PGVKLNPEH-----KPKYIYLLAYASS 356
D+ F PG + + Y +
Sbjct: 369 AAYFGASSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDE 413
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 29.8 bits (68), Expect = 2.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147
VTE +VE+ + + + F P EE + PTW
Sbjct: 39 VTETDHLVEDLIISELRERF-PS--HRFIAEEAAASGAKCVLTHSPTW 83
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 30.0 bits (67), Expect = 2.8
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 364 KKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWV 423
S D+ + + I KV N S E + ++ + H +R + R
Sbjct: 185 NNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQGDLLQPGREF 244
Query: 424 --ECTVTEPSYFKLCTEH 439
E T+ + + H
Sbjct: 245 LKEGTLMKVTGKNRRPRH 262
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 29.7 bits (67), Expect = 3.1
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 150 LIYRLAEEYPDCLMLNFTI----KLISDA 174
L+ RL + YP L+ +++ +SD
Sbjct: 153 LLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 29.7 bits (67), Expect = 3.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
++ RL + YP + F++
Sbjct: 152 ILERLRQAYPKKRIFTFSV 170
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for
structural genomics, J protein structure initiative;
1.76A {Acidithiobacillus ferrooxidans atcc 23}
Length = 146
Score = 28.7 bits (64), Expect = 3.7
Identities = 10/119 (8%), Positives = 32/119 (26%), Gaps = 33/119 (27%)
Query: 504 VVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTP---------EFVQLFLP------- 547
+ ++ ++ W G+ + ++ + P P + +
Sbjct: 12 LTQFTREVWSEGNIEA--SDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPD 69
Query: 548 --------IVEND------EITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCW 592
+ D T T + D P + ++ + + + ++ W
Sbjct: 70 QCFDIQGLFADGDAVVMTWLWTATHKEDIPGFPSTGKQIKMSGATVYYFDGN-RLTGHW 127
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 29.4 bits (66), Expect = 3.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
L+ RL+ +Y L F+I
Sbjct: 153 LMERLSVDYGKKSKLEFSI 171
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 29.2 bits (66), Expect = 4.8
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 57 QLKRYFQAGGNPEQVIELL---------SQNYKAVAQMANLVAEWLILGGVNVTEVQAMV 107
L + VI+ L + + + +A N + L G VT ++
Sbjct: 9 VLFQAATD--EQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSA- 65
Query: 108 ENHLKDMILKTFDPKKADTIF 128
+ D I+ + +
Sbjct: 66 GLVVGDNIVGKIKGRGGKNLL 86
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A
{Staphylococcus saprophyticus subsp}
Length = 135
Score = 27.9 bits (62), Expect = 5.2
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 521 LIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEIT--GTMRGDGENDPVSEFIVQTLEHE 578
+ V EA PE + F ++ T+ E +
Sbjct: 8 QVDVPRETVFEAFV---DPEKIGGFWFSSSSERWEQGKTITLRYEEYDAE-LNINIER-- 61
Query: 579 WHQLEDDKKIYQCWPVHFSSVDFVIEPKGTY 609
+ED++ I W H ++ F GT
Sbjct: 62 ---VEDNQLIAFTWGAHPITIQFEESEAGTV 89
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 29.0 bits (65), Expect = 5.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 150 LIYRLAEEYPDCLMLNFTI 168
LI L E+Y + +L+ +
Sbjct: 155 LIESLKEKYGEIPVLSCAV 173
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex,
envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Length = 572
Score = 29.1 bits (64), Expect = 5.8
Identities = 5/49 (10%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 308 YSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKY-IYLLAYAS 355
+ P+++I + + ++ ++ ++ +Y L + S
Sbjct: 70 VALRSFLPLEVIISAERMRMIAPPALGSDLEPPGPPAGRFHVYTLGFLS 118
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces
nogalater} SCOP: d.17.4.9
Length = 152
Score = 27.9 bits (62), Expect = 5.9
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 28/114 (24%)
Query: 504 VVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTP----EFVQLFLP------------ 547
++ V W R D + + P E V+
Sbjct: 10 CLEMV-AAWNRWDVSG--VVAHWAPDVVHYDDEDKPVSAEEVVRRMNSAVEAFPDLRLDV 66
Query: 548 ---IVENDEI------TGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCW 592
+ E D + + T +G + V+ E + + K+ + W
Sbjct: 67 RSIVGEGDRVMLRITCSATHQGVFMGIAPTGRKVRWTYLEELRFSEAGKVVEHW 120
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR
{Chlamydomonas reinhardtii}
Length = 155
Score = 27.6 bits (62), Expect = 8.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 282 QANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLI 319
A +AL ++L PADIT + + SP P + +
Sbjct: 15 AALKAL------DTLKPADITEV-KGMKSP-PAGVRRV 44
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 28.2 bits (63), Expect = 9.8
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 364 KKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFH 408
+ T + ++ L+ I I+ + + N+ +E L +
Sbjct: 172 RHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLY 216
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 27.9 bits (62), Expect = 9.9
Identities = 5/52 (9%), Positives = 14/52 (26%)
Query: 364 KKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVV 415
K T+ + + L ++ N + E + + +
Sbjct: 181 KHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATAL 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,583,141
Number of extensions: 580541
Number of successful extensions: 1454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1436
Number of HSP's successfully gapped: 36
Length of query: 620
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 521
Effective length of database: 3,937,614
Effective search space: 2051496894
Effective search space used: 2051496894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)