RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15691
         (620 letters)



>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding
           protein FhuD {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 30.2 bits (67), Expect = 0.70
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 6/151 (3%)

Query: 6   DDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDY------IMEPGIFSQLK 59
              +           +   G  P+   ++ L E  +  +            E  I S   
Sbjct: 76  PSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKP 135

Query: 60  RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
           R+ + G  P  +  L+   +  V    +L  E L   G+               + +   
Sbjct: 136 RFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRL 195

Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSL 150
              K   +   + +    +  ++  P W+++
Sbjct: 196 AAYKDVDVLCFDHDNSKDMDALMATPLWQAM 226


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 29.4 bits (65), Expect = 1.4
 Identities = 31/275 (11%), Positives = 74/275 (26%), Gaps = 48/275 (17%)

Query: 333 FKPGVKLNPEHKPKYIYLLAYASSV-YEVSTGKK--TKQKSFNKDDLKTTI--------- 380
           FK    L+   K KY+  L +   + +++  G        S N+   K            
Sbjct: 36  FKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVN 95

Query: 381 ----QAIEKVHSICNSSKSSNELIAE--ITTLFHCIRYPVVSVGVIRWVECTVTEPSYFK 434
                     ++I N   S N       +  +   +    +                  K
Sbjct: 96  SNSELIRLINNAIKNDLASRNPTFMGLALHCIA-NVGSREM---------AEAFAGEIPK 145

Query: 435 LCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVN 494
           +            D V         ++ +   +L     D    +       +L D+  +
Sbjct: 146 ILVAGDTM-----DSVKQSAALCLLRLYRTSPDLVP-MGDWTSRV-----VHLLNDQ--H 192

Query: 495 LLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEI 554
           L        ++  +    +  +   + +   V+ +   +T   T      +  +      
Sbjct: 193 LGVVTAATSLITTL--AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 250

Query: 555 TGTMR-----GDGENDPVSEFIVQTLEHEWHQLED 584
              +R        E+  V   + + LE   ++ ++
Sbjct: 251 VKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQE 285


>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 28.1 bits (62), Expect = 2.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 229 YVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVT 268
           +VYSQV+    +   K  S    LA E+   + Q    V 
Sbjct: 47  FVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVP 86


>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
          Length = 253

 Score = 27.3 bits (60), Expect = 5.0
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 10/41 (24%)

Query: 531 EAITPPYTPEFVQLFLPIVENDEITGTM-RGDGENDPVSEF 570
           E    P T EF +          +   +    G+  PVS F
Sbjct: 213 ETKAEPMTNEFFK---------NVVKPILTQQGDKLPVSAF 244


>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
          Length = 209

 Score = 26.9 bits (59), Expect = 6.8
 Identities = 7/42 (16%), Positives = 20/42 (47%)

Query: 364 KKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITT 405
           +  +    ++ D++ ++ A + + + C   +   EL  +I T
Sbjct: 164 RHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQILT 205


>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I
           {Thermus aquaticus [TaxId: 271]}
          Length = 120

 Score = 25.7 bits (56), Expect = 8.5
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 558 MRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPV-HFSSVDFVIEPKGTYGRRITEI 616
                   P++   ++  E    +L     +   + +     V+   E +G   R +T++
Sbjct: 61  KTSKDFTTPMAGIPLRAFEAYAERL-----LKMGFRLAVADQVEPAEEAEGLVRREVTQL 115

Query: 617 LT 618
           LT
Sbjct: 116 LT 117


>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 156

 Score = 26.1 bits (57), Expect = 9.5
 Identities = 4/40 (10%), Positives = 13/40 (32%)

Query: 229 YVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVT 268
           Y+Y+ +  +         +   +L   + K + +      
Sbjct: 54  YLYANICFRHHETSGSVPTDYLQLMVYVVKTSIKIPSSHN 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,351,186
Number of extensions: 111714
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 13
Length of query: 620
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 529
Effective length of database: 1,158,166
Effective search space: 612669814
Effective search space used: 612669814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)