BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15692
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 134 YLDTLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDF 193
Y+ TLEKC+ C +PILDRILRA G+ YHP CFTCVVC + LDGIPFTVDA +QIHCI+DF
Sbjct: 11 YVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70
Query: 194 HKKFA 198
H+KFA
Sbjct: 71 HRKFA 75
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 97 AMDKVYHISCFTCDHCAVQLEGKPFYI 123
AM K YH CFTC C L+G PF +
Sbjct: 32 AMGKAYHPGCFTCVVCHRGLDGIPFTV 58
>pdb|1X61|A Chain A, Solution Structure Of The First Lim Domain Of Thyroid
Receptor Interacting Protein 6 (Trip6)
Length = 72
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 86 ERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEK 140
E ++G+G+G A+D+V+H+ CF C C QL G+ FY +E AYCE Y+ TLE
Sbjct: 13 EDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 220 VVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALTST 273
VVALDR FH+GC+ C C ++ G+ Y ++ C+ C +++ S+
Sbjct: 22 VVALDRVFHVGCFVCSTC----RAQLRGQHFYAVERRAYCEGCYVATLESGPSS 71
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 133 GYLDTLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQ 191
G + + +C+ C + ILD+ IL+ R +H +C C C L F+ A ++C +
Sbjct: 1 GSMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFS--RAGSVYCKE 58
Query: 192 DFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCY 251
DF K+F +C C+ I P + VR A D +H+ C+ C C L A G Y
Sbjct: 59 DFFKRFGTKCTACQQGIPP----TQVVR-KAQDFVYHLHCFACIICNRQL---ATGDEFY 110
Query: 252 PLDD-HVLCK 260
++D ++CK
Sbjct: 111 LMEDGRLVCK 120
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 97 AMDKVYHISCFTCDHCAVQLE-GKPFYIIE-GHAYCEQGY 134
A D VYH+ CF C C QL G FY++E G C++ Y
Sbjct: 84 AQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY 123
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYL 135
+ C CG +I + AMD +H C C C QL G Y G C Y+
Sbjct: 3 WKRCAGCGGKI-ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 61
Query: 136 DTLEK---CSVCVK--PILDRILRATGRPYHPACFTCVVCGKSL 174
CS C + P + ++RA G YH CFTC C L
Sbjct: 62 RLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRL 105
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQ 132
G C CG+ I A VYH+ CFTC C +L G F+ I G +CE
Sbjct: 68 GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 122
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYL 135
+ C CG +I + AMD +H C C C QL G Y G C Y+
Sbjct: 5 WKRCAGCGGKI-ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 136 DTLEK---CSVCVK--PILDRILRATGRPYHPACFTCVVCGKSL 174
CS C + P + ++RA G YH CFTC C L
Sbjct: 64 RLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRL 107
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQ 132
G C CG+ I A VYH+ CFTC C +L G F+ I G +CE
Sbjct: 70 GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 124
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 141 CSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
C+ C + ILDR IL+A R +H C C C L F+ ++C DF K+F
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS--RGESVYCKDDFFKRFGT 120
Query: 200 RCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD-HVL 258
+C C+ I P + VR A D +H+ C+ C C L A G Y ++D ++
Sbjct: 121 KCAACQLGIPP----TQVVR-RAQDFVYHLHCFACVVCKRQL---ATGDEFYLMEDSRLV 172
Query: 259 CKS 261
CK+
Sbjct: 173 CKA 175
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C C + IL A+D+ +H C C C V L + F E YC+ +
Sbjct: 63 CAGCDQHILDRFI-LKALDRHWHSKCLKCSDCHVPLAERCFSRGES-VYCKDDFFKRFGT 120
Query: 140 KCSVCVK--PILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDF 193
KC+ C P + RA YH CF CVVC + L G F + +++ C D+
Sbjct: 121 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 222 ALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266
ALDR +H C +C DC + L+ RG + V CK KR
Sbjct: 78 ALDRHWHSKCLKCSDCHVPLAERCFSRG-----ESVYCKDDFFKR 117
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 133 GYLDTLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQ 191
G + C+ C + ILDR IL+A R +H C C C L F+ ++C
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS--RGESVYCKD 58
Query: 192 DFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCY 251
DF K+F +C C+ I P + VR A D +H+ C+ C C L A G Y
Sbjct: 59 DFFKRFGTKCAACQLGIPP----TQVVR-RAQDFVYHLHCFACVVCKRQL---ATGDEFY 110
Query: 252 PLDD-HVLCKS 261
++D ++CK+
Sbjct: 111 LMEDSRLVCKA 121
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C C + IL A+D+ +H C C C V L + F E YC+ +
Sbjct: 9 CAGCDQHILDRFI-LKALDRHWHSKCLKCSDCHVPLAERCFSRGES-VYCKDDFFKRFGT 66
Query: 140 KCSVCVK--PILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDF 193
KC+ C P + RA YH CF CVVC + L G F + +++ C D+
Sbjct: 67 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 222 ALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRV 267
ALDR +H C +C DC + L+ RG + V CK KR
Sbjct: 24 ALDRHWHSKCLKCSDCHVPLAERCFSRG-----ESVYCKDDFFKRF 64
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 135 LDTLEKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQD 192
EKCS C + ++++ A G+P+H CF C CGKSL+ T + +I+C
Sbjct: 33 FGGAEKCSACGDSVYAAEKVIGA-GKPWHKNCFRCAKCGKSLESTTLT-EKEGEIYCKGC 90
Query: 193 FHKKFAPR 200
+ K F P+
Sbjct: 91 YAKNFGPK 98
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 70 DTSSESDLFG---ECCKCG------ERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKP 120
+TS + FG +C CG E+++G G K +H +CF C C LE
Sbjct: 25 NTSKFAQKFGGAEKCSACGDSVYAAEKVIGAG-------KPWHKNCFRCAKCGKSLESTT 77
Query: 121 FYIIEGHAYCEQGYLDTL 138
EG YC+ Y
Sbjct: 78 LTEKEGEIYCKGCYAKNF 95
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 20/84 (23%)
Query: 190 IQDFHKKF--APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSS---- 243
F +KF A +C C + +V+ + +H C+RC CG L S
Sbjct: 26 TSKFAQKFGGAEKCSACGDSVY------AAEKVIGAGKPWHKNCFRCAKCGKSLESTTLT 79
Query: 244 EAEGRGCYPLDDHVLCKSCNAKRV 267
E EG + CK C AK
Sbjct: 80 EKEG--------EIYCKGCYAKNF 95
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 135 LDTLEKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQD 192
EKCS C + ++++ A G+P+H CF C CGKSL+ T + +I+C
Sbjct: 33 FGGAEKCSRCGDSVYAAEKVIGA-GKPWHKNCFRCAKCGKSLESTTLT-EKEGEIYCKGC 90
Query: 193 FHKKFAPR 200
+ K F P+
Sbjct: 91 YAKNFGPK 98
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 70 DTSSESDLFG---ECCKCG------ERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKP 120
+TS + FG +C +CG E+++G G K +H +CF C C LE
Sbjct: 25 NTSKFAQKFGGAEKCSRCGDSVYAAEKVIGAG-------KPWHKNCFRCAKCGKSLESTT 77
Query: 121 FYIIEGHAYCEQGYLDTL 138
EG YC+ Y
Sbjct: 78 LTEKEGEIYCKGCYAKNF 95
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 219 RVVALDRSFHIGCYRCEDCGLVLSS----EAEGRGCYPLDDHVLCKSCNAKRV 267
+V+ + +H C+RC CG L S E EG + CK C AK
Sbjct: 51 KVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG--------EIYCKGCYAKNF 95
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 86 ERILGEGSGCTAMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYLDTLEK--- 140
++ +G+ A+D+ +H C +CD C +L G+ Y G C + YL +
Sbjct: 9 QQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGL 68
Query: 141 CSVCVKPI--LDRILRATGRPYHPACFTCVVCGKSL 174
C+ C K I + +R + YH CF C C K
Sbjct: 69 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 104
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 77 LFGE---CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQ 132
LFG+ C C +RI DKVYH+ CF C C G + +I CEQ
Sbjct: 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 121
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLD--GIPFTVDAANQIHCIQDF 193
+L C C + I DR L+A + +H C +C +CG L G ++ C +D+
Sbjct: 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKL-CRRDY 59
Query: 194 HKKFAPR--CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDC 237
+ F C C I + T+RV D+ +H+ C++C C
Sbjct: 60 LRLFGQDGLCASCDKRIRA---YEMTMRVK--DKVYHLECFKCAAC 100
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCE 131
C KCG I+G + A DK H CF C C + L+ K ++ +EG YCE
Sbjct: 28 CDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCE 76
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 139 EKCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
KC C + + ++ GR +H CF C+VC K+LD + A +++C + KK+
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDA-EVYCKSCYGKKY 66
Query: 198 APR 200
P+
Sbjct: 67 GPK 69
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of MlpCRP3
Length = 58
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 140 KCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
KC C K + ++++ G+P+H CF C +CGKSL+ T D +++C + K F
Sbjct: 1 KCPRCGKSVYAAEKVM-GGGKPWHKTCFRCAICGKSLESTNVT-DKDGELYCKVCYAKNF 58
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 155 ATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR 200
G+ +H +CF C CGKSL+ D +I+C + K F P+
Sbjct: 133 GAGKSWHKSCFRCAKCGKSLESTTL-ADKDGEIYCKGCYAKNFGPK 177
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 139 EKCSVCVKPI-LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHC 189
+KC VC K + ++ G +H +CF C+VC K+LD V ++I+C
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVH-GDEIYC 58
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 219 RVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266
+V+ +S+H C+RC CG L S D + CK C AK
Sbjct: 130 KVIGAGKSWHKSCFRCAKCGKSLESTTLA----DKDGEIYCKGCYAKN 173
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 86 ERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138
E+++G G K +H SCF C C LE +G YC+ Y
Sbjct: 129 EKVIGAG-------KSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 174
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 155 ATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR 200
G+ +H +CF C CGKSL+ D +I+C + K F P+
Sbjct: 26 GAGKSWHKSCFRCAKCGKSLESTTL-ADKDGEIYCKGCYAKNFGPK 70
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 219 RVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266
+V+ +S+H C+RC CG L S D + CK C AK
Sbjct: 23 KVIGAGKSWHKSCFRCAKCGKSLESTTLA----DKDGEIYCKGCYAKN 66
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 86 ERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138
E+++G G K +H SCF C C LE +G YC+ Y
Sbjct: 22 EKVIGAG-------KSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 67
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding Lim
Protein 3
Length = 80
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C E I G A+DK +H+SCF C C+V L G+ + +G YCE Y
Sbjct: 18 CAGCKEEIK-HGQSLLALDKQWHVSCFKCQTCSVILTGE-YISKDGVPYCESDY 69
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 220 VVALDRSFHIGCYRCEDCGLVLSSE 244
++ALD+ +H+ C++C+ C ++L+ E
Sbjct: 31 LLALDKQWHVSCFKCQTCSVILTGE 55
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQI 187
C C + I+ R+++A +HP CF C +C + L I F +A +
Sbjct: 8 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHL 54
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCE 131
C +CGE I+G AM+ +H CF CD C L F G C
Sbjct: 8 CHQCGEFIIGRV--IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCR 56
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 36.2 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C KC + I G T D+ +H CF C C+ +L G+ F +E YC Y
Sbjct: 8 CVKCNKAI--TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Score = 34.7 bits (78), Expect = 0.067, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
C C K I + +P+H CF CV C K L G FT +Q +C+ D +K F
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA-VEDQYYCV-DCYKNF 62
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTV--DAANQIHCIQDFH 194
C C KPI + +P+H CF C C K L G FT D A ++C D +
Sbjct: 8 CVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 94 GCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLD 136
G T ++ +H CF C C QL G+ F + AYC + D
Sbjct: 19 GVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 96 TAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
+AMD V+H CF C C F+ ++G +CE Y
Sbjct: 31 SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKS--------LDGIPF 179
KC C +P+L+ L A +HP CF C C S LDG PF
Sbjct: 17 KCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPF 64
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 191 QDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSS----EAE 246
+DF F+P+C C P++ + + A+D +H C+ C DC S+ E +
Sbjct: 8 KDFLAMFSPKCGGCNRPVLEN-------YLSAMDTVWHPECFVCGDCFTSFSTGSFFELD 60
Query: 247 GR 248
GR
Sbjct: 61 GR 62
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 77 LFGE---CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE-GKPFYIIEGHAYCEQ 132
LFG+ C C +RI DKVYH+ CF C C G + +I CEQ
Sbjct: 6 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQ 65
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 77 LFGE---CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE-GKPFYIIEGHAYCEQ 132
LFG+ C C +RI DKVYH+ CF C C G + +I CEQ
Sbjct: 4 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQ 63
>pdb|1WIG|A Chain A, Solution Structure Of Rsgi Ruh-019, A Lim Domain Of Actin
Binding Lim Protein 2 (kiaa1808 Protein) From Human Cdna
Length = 73
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGK 172
C C K I R+L A + YHP+C CV CG+
Sbjct: 8 CDSCEKYITGRVLEAGEKHYHPSCALCVRCGQ 39
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 137 TLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDFHK 195
T E+C P ++I+ + G YH CF C C + +G+ + + + +C DF
Sbjct: 9 TCERCKGGFAPA-EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG--RKYCEHDFQM 65
Query: 196 KFAP 199
FAP
Sbjct: 66 LFAP 69
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 100 KVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKC 141
++YH CF C C Q FY EG YCE + C
Sbjct: 29 ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC 70
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 100 KVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKC 141
++YH CF C C Q FY EG YCE + C
Sbjct: 33 ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC 74
Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 137 TLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDFHK 195
T E+C P ++I+ + G YH CF C C + +G+ + + +C DF
Sbjct: 13 TCERCKGGFAPA-EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK--YCEHDFQM 69
Query: 196 KFAP 199
FAP
Sbjct: 70 LFAP 73
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 100 KVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
++YH CF C C Q FY EG YCE +
Sbjct: 33 ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Score = 28.5 bits (62), Expect = 4.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 137 TLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDFHK 195
T E+C P ++I+ + G YH CF C C + +G+ + + +C DF
Sbjct: 13 TCERCKGGFAPA-EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK--YCEHDFQM 69
Query: 196 KFA 198
FA
Sbjct: 70 LFA 72
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 140 KCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHC 189
KC C K + ++ GR +H CF C+ C K+LD ++I+C
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAH-ESEIYC 52
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 66
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 91 EGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
EG AM K +H+ F C C G Y +G AYCE Y
Sbjct: 16 EGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDG 176
C C +PI R++ A G+ +H F C C K G
Sbjct: 8 CGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLG 43
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial Protein
Lost In Neoplasm
Length = 91
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 97 AMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCE 131
A +V+HISCF C +C +L + + G YC+
Sbjct: 33 ANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCK 67
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVC 170
+C C + I ++ A G+ YHP CF C VC
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVC 47
>pdb|1X62|A Chain A, Solution Structure Of The Lim Domain Of Carboxyl Terminal
Lim Domain Protein 1
Length = 79
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQ 132
C KCG I+G D+ H C+ C C L+ K + +E YCE+
Sbjct: 18 CDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEK 67
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 218 VRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALTS 272
V V DR H CY C DCG L +G + ++D + C+ +RV +S
Sbjct: 28 VFVKLRDRHRHPECYVCTDCGTNLKQ----KGHFFVEDQIYCEKHARERVSGPSS 78
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 133 GYLDTLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL--DGIPFTVDAANQIHC 189
G L C C I+ ++ R HP C+ C CG +L G F D QI+C
Sbjct: 10 GNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVED---QIYC 65
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 31.6 bits (70), Expect = 0.56, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 80 ECCKCGERILGEGSGCTAM---DKVYHISCFTCDHCAVQLEGKPFYIIEGHAYC 130
+C C I G G G + + + +H CF C C+V L K F + YC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC 70
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDFHKKF 197
++C P +RI+ + G YH CF C C + +G+ + + + +C DF F
Sbjct: 15 QRCQARFSPA-ERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEG--RKYCEHDFQMLF 71
Query: 198 A 198
A
Sbjct: 72 A 72
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C R + ++YH CF C C FY EG YCE +
Sbjct: 14 CQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDF 67
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like Pdz
And Lim Domains Protein
Length = 90
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198
C+ C + I L A G+ +HP F C C ++ I F V+ ++C + K FA
Sbjct: 28 CAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGF-VEEKGALYCELCYEKFFA 84
>pdb|3OV0|A Chain A, Structure Of Dodecaheme Cytochrome C Gsu1996
Length = 318
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVA---LDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLD 254
A C C + P + ++ VA FH+G Y+C +C L + G + +
Sbjct: 151 AGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMA 210
Query: 255 DHVLCKSCNA 264
D KSC A
Sbjct: 211 DMDKGKSCGA 220
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 97 AMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYL 135
A+D+ +H C +CD C +L G+ Y G C + YL
Sbjct: 21 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSS----EAEGR 248
P+C C D E RV +L + +H C +CE CG L+S E EG+
Sbjct: 1 PKCPKC------DKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGK 48
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human Four
And A Half Lim Domains Protein 3
Length = 82
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 193 FHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
+ FA C C+ I DS + + DR FH GC+RC C L+ E
Sbjct: 10 YDNTFANTCAECQQLIGHDSRE-----LFYEDRHFHEGCFRCCRCQRSLADE 56
>pdb|3OUE|A Chain A, Structure Of C-Terminal Hexaheme Fragment Of Gsu1996
Length = 158
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 216 ETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNA 264
+ V A FH+G Y+C +C L + G + + D KSC A
Sbjct: 12 KGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGA 60
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of Human
Fhl5 Protein
Length = 76
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 99 DKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQ 132
D +H CF C C+V L GK F +C++
Sbjct: 28 DSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
>pdb|2COR|A Chain A, Solution Structure Of The Third Lim Domain Of Particularly
Interesting New Cys-His Protein
Length = 79
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSL 174
C C I ++ L PYHP F C CGK L
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL 51
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDT--- 137
C C E I A ++ +H+ F C C L G+ + ++ C+ Y+
Sbjct: 6 CAGCDELIFSNEYT-QAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV 64
Query: 138 -LEKCSVCVKPILDRILRATGRPYHPA--CFTCVVCGKSLDGIPF 179
+ C + P + R+ +H + CF C C K L G F
Sbjct: 65 VCQGCHNAIDPEVQRVTY-NNFSWHASTECFLCSCCSKCLIGQKF 108
>pdb|1X4L|A Chain A, Solution Structure Of Lim Domain In Four And A Half Lim
Domains Protein 2
Length = 72
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 DRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSC 262
+R +H C+ C+ C L L GRG D +LC C
Sbjct: 28 ERQWHNDCFNCKKCSLSLV----GRGFLTERDDILCPDC 62
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 25/81 (30%)
Query: 202 CVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCED-----CGLVLSSEAEGRGCYPLDDH 256
C+C+ P +DE+ F+IGC RC++ C +L SEAE L D
Sbjct: 11 CICKTP------EDES--------KFYIGCDRCQNWYHGRCVGILQSEAE------LIDE 50
Query: 257 VLCKSCNAKRVQALTSTMVTE 277
+C C + T +TE
Sbjct: 51 YVCPQCQSTEDAMTVLTPLTE 71
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 133 GYLDTLEKCSVCVKPILDRILRATGRPYHPACF 165
G L T++ V V P+ +RI +AT + HP C
Sbjct: 112 GKLITIDGILVKVTPVKERIYKATYKHIHPDCM 144
>pdb|1RWJ|A Chain A, C7-type Three-heme Cytochrome Domain
Length = 82
Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 222 ALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNA 264
A FH+G Y+C +C L + G + + D KSC A
Sbjct: 20 AFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGA 62
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198
+C+ C K + + +P+H C C C L G FT + +C+ F + FA
Sbjct: 17 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDP-YCVACFGELFA 74
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 133 GYLDTLEKCSVCVKPILDRILRATGRPYHPACF 165
G L T++ V V P+ +RI +AT + HP C
Sbjct: 118 GKLITIDGILVKVTPVKERIYKATYKHIHPDCM 150
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 25/81 (30%)
Query: 202 CVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCED-----CGLVLSSEAEGRGCYPLDDH 256
C+C+ P DE+ F+IGC RC++ C +L SEAE L D
Sbjct: 11 CICKTPY------DES--------KFYIGCDRCQNWYHGRCVGILQSEAE------LIDE 50
Query: 257 VLCKSCNAKRVQALTSTMVTE 277
+C C + T +TE
Sbjct: 51 YVCPQCQSTEDAXTVLTPLTE 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,854,640
Number of Sequences: 62578
Number of extensions: 307435
Number of successful extensions: 842
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 132
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)