Query psy15692
Match_columns 278
No_of_seqs 341 out of 1964
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:02:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1701|consensus 100.0 4.3E-52 9.3E-57 368.7 4.9 202 70-271 266-467 (468)
2 KOG2272|consensus 100.0 4.8E-33 1E-37 231.9 -5.5 175 77-264 72-310 (332)
3 KOG2272|consensus 100.0 1.5E-32 3.3E-37 228.9 -4.5 181 79-270 13-256 (332)
4 KOG1703|consensus 99.9 8.8E-28 1.9E-32 227.3 3.1 175 78-263 303-478 (479)
5 KOG1044|consensus 99.9 1.1E-25 2.3E-30 207.0 5.4 173 78-264 16-248 (670)
6 KOG4577|consensus 99.8 4.5E-23 9.8E-28 175.2 -3.3 125 138-272 33-159 (383)
7 KOG4577|consensus 99.8 2.4E-22 5.1E-27 170.8 -5.7 123 77-201 32-158 (383)
8 KOG1703|consensus 99.8 1.8E-20 3.9E-25 177.6 6.3 174 81-268 246-422 (479)
9 KOG1701|consensus 99.8 3.3E-21 7.1E-26 172.2 -4.0 119 139-270 275-396 (468)
10 KOG1044|consensus 99.7 1E-17 2.3E-22 154.6 4.6 110 76-188 131-242 (670)
11 PF00412 LIM: LIM domain; Int 99.5 8.2E-15 1.8E-19 99.0 3.4 58 81-138 1-58 (58)
12 PF00412 LIM: LIM domain; Int 99.4 6E-13 1.3E-17 89.8 4.1 58 201-267 1-58 (58)
13 KOG1700|consensus 99.1 1.5E-11 3.2E-16 103.6 0.2 120 139-269 8-169 (200)
14 KOG1700|consensus 99.1 1.6E-11 3.4E-16 103.4 0.2 117 79-197 8-167 (200)
15 smart00132 LIM Zinc-binding do 98.6 1.9E-08 4.1E-13 61.7 2.7 38 80-117 1-38 (39)
16 smart00132 LIM Zinc-binding do 98.5 5.2E-08 1.1E-12 59.6 2.3 36 140-175 1-38 (39)
17 KOG0490|consensus 97.8 3.7E-06 8E-11 72.4 -1.1 111 83-195 1-118 (235)
18 KOG1702|consensus 97.6 8.4E-06 1.8E-10 67.3 -1.6 57 79-136 5-61 (264)
19 KOG0490|consensus 97.1 4.8E-05 1E-09 65.5 -2.5 112 144-266 2-119 (235)
20 KOG1702|consensus 96.6 0.00017 3.7E-09 59.7 -2.6 60 139-199 5-65 (264)
21 PF08394 Arc_trans_TRASH: Arch 89.4 0.2 4.2E-06 30.2 1.1 33 81-116 1-33 (37)
22 PF10367 Vps39_2: Vacuolar sor 88.0 0.48 1.1E-05 35.2 2.8 33 76-108 76-108 (109)
23 PF14446 Prok-RING_1: Prokaryo 85.6 0.37 7.9E-06 31.6 0.8 38 78-115 5-50 (54)
24 PF14446 Prok-RING_1: Prokaryo 83.0 1.1 2.3E-05 29.4 2.1 40 197-241 4-51 (54)
25 KOG2462|consensus 82.0 0.38 8.1E-06 42.1 -0.4 123 104-242 128-254 (279)
26 PF08394 Arc_trans_TRASH: Arch 78.0 1.3 2.7E-05 26.7 1.1 33 201-241 1-33 (37)
27 PF14634 zf-RING_5: zinc-RING 73.0 5.5 0.00012 24.6 3.2 40 167-206 2-44 (44)
28 PF14835 zf-RING_6: zf-RING of 71.2 4.2 9E-05 27.7 2.4 47 165-212 8-54 (65)
29 PF09943 DUF2175: Uncharacteri 69.5 2 4.4E-05 31.9 0.7 32 80-111 4-35 (101)
30 PF12773 DZR: Double zinc ribb 67.8 4.2 9.2E-05 25.7 1.9 7 110-116 16-22 (50)
31 COG1645 Uncharacterized Zn-fin 66.3 3.4 7.5E-05 32.2 1.4 23 233-264 30-52 (131)
32 PF10367 Vps39_2: Vacuolar sor 64.5 5.1 0.00011 29.6 2.0 27 139-165 79-107 (109)
33 PF11781 RRN7: RNA polymerase 64.1 3.8 8.2E-05 24.5 1.0 26 232-265 9-34 (36)
34 PF10235 Cript: Microtubule-as 64.0 4 8.7E-05 29.7 1.3 36 108-150 46-81 (90)
35 PF13240 zinc_ribbon_2: zinc-r 63.5 3.8 8.3E-05 21.8 0.8 11 81-91 2-12 (23)
36 KOG4739|consensus 62.5 6.2 0.00013 34.0 2.4 43 167-209 6-48 (233)
37 PF10083 DUF2321: Uncharacteri 61.0 3.3 7.2E-05 33.2 0.5 48 127-175 28-79 (158)
38 PRK14890 putative Zn-ribbon RN 60.6 5 0.00011 26.7 1.2 14 79-92 8-21 (59)
39 PF00645 zf-PARP: Poly(ADP-rib 59.9 1.8 3.9E-05 30.7 -1.1 35 199-233 8-47 (82)
40 smart00504 Ubox Modified RING 58.3 5.2 0.00011 26.4 1.0 42 107-149 2-46 (63)
41 PF13248 zf-ribbon_3: zinc-rib 58.3 8.5 0.00018 21.0 1.7 12 199-210 3-14 (26)
42 PF09943 DUF2175: Uncharacteri 58.3 3.2 6.9E-05 30.9 -0.1 27 140-166 4-32 (101)
43 KOG0320|consensus 57.0 2.6 5.5E-05 34.6 -0.8 47 104-150 129-179 (187)
44 PF12674 Zn_ribbon_2: Putative 56.1 5.4 0.00012 28.5 0.8 32 233-264 2-34 (81)
45 PF06677 Auto_anti-p27: Sjogre 55.5 8.2 0.00018 23.8 1.4 22 233-262 19-40 (41)
46 KOG1813|consensus 55.4 5.9 0.00013 35.2 1.1 44 106-150 241-287 (313)
47 PF14835 zf-RING_6: zf-RING of 54.8 11 0.00023 25.7 2.0 48 107-154 8-56 (65)
48 PRK14559 putative protein seri 52.9 15 0.00032 36.8 3.5 27 185-211 14-40 (645)
49 COG5152 Uncharacterized conser 52.7 2.8 6.1E-05 35.0 -1.2 46 105-151 195-243 (259)
50 COG2191 Formylmethanofuran deh 52.0 6.8 0.00015 32.9 0.9 30 107-136 173-202 (206)
51 COG0068 HypF Hydrogenase matur 51.7 9.1 0.0002 38.2 1.8 84 76-174 99-183 (750)
52 KOG4443|consensus 49.0 13 0.00028 36.7 2.3 83 162-264 66-153 (694)
53 COG2888 Predicted Zn-ribbon RN 48.2 11 0.00024 25.1 1.2 15 78-92 9-23 (61)
54 KOG0320|consensus 48.0 12 0.00026 30.9 1.7 50 162-211 129-180 (187)
55 PF13920 zf-C3HC4_3: Zinc fing 47.9 17 0.00037 22.9 2.1 42 166-209 4-48 (50)
56 KOG3816|consensus 47.6 2.1 4.5E-05 39.3 -3.0 119 139-264 381-508 (526)
57 cd00162 RING RING-finger (Real 45.1 20 0.00042 21.1 2.1 24 184-207 18-44 (45)
58 PF02069 Metallothio_Pro: Prok 44.3 13 0.00029 24.1 1.2 24 109-132 10-33 (52)
59 PF14471 DUF4428: Domain of un 44.2 11 0.00025 24.3 0.8 30 233-266 1-30 (51)
60 PRK00420 hypothetical protein; 43.4 16 0.00034 27.8 1.6 25 232-264 24-48 (112)
61 COG1645 Uncharacterized Zn-fin 43.0 16 0.00034 28.6 1.6 21 109-134 31-51 (131)
62 COG0068 HypF Hydrogenase matur 42.9 16 0.00035 36.5 2.0 83 139-242 102-184 (750)
63 PF11571 Med27: Mediator compl 42.5 13 0.00028 27.0 1.0 17 192-208 48-64 (90)
64 KOG0823|consensus 42.1 17 0.00036 31.2 1.8 53 104-157 45-104 (230)
65 PF10886 DUF2685: Protein of u 41.8 18 0.0004 23.6 1.5 25 199-229 2-26 (54)
66 PF07503 zf-HYPF: HypF finger; 40.8 14 0.00031 21.8 0.9 31 141-175 2-32 (35)
67 COG5152 Uncharacterized conser 39.7 11 0.00024 31.5 0.4 45 165-211 197-243 (259)
68 PF07191 zinc-ribbons_6: zinc- 39.4 11 0.00024 26.1 0.3 24 126-149 16-41 (70)
69 PF06524 NOA36: NOA36 protein; 38.6 37 0.0008 29.8 3.3 99 104-211 111-222 (314)
70 KOG2462|consensus 38.1 9.6 0.00021 33.5 -0.3 92 76-176 128-227 (279)
71 KOG1813|consensus 37.6 20 0.00043 31.9 1.6 45 165-211 242-288 (313)
72 KOG3002|consensus 37.2 18 0.00039 32.5 1.3 43 107-149 49-91 (299)
73 PRK00807 50S ribosomal protein 36.5 30 0.00065 22.4 2.0 26 79-104 2-29 (52)
74 TIGR00143 hypF [NiFe] hydrogen 36.3 21 0.00045 36.2 1.7 84 76-174 66-150 (711)
75 PF00130 C1_1: Phorbol esters/ 36.1 25 0.00055 22.3 1.6 13 78-90 11-23 (53)
76 PF12156 ATPase-cat_bd: Putati 35.5 27 0.00058 25.2 1.8 24 166-189 2-28 (88)
77 PF06906 DUF1272: Protein of u 34.7 51 0.0011 21.7 2.7 43 167-210 8-53 (57)
78 PF14569 zf-UDP: Zinc-binding 33.7 28 0.00061 24.6 1.5 13 197-209 8-20 (80)
79 PRK00398 rpoP DNA-directed RNA 33.5 12 0.00027 23.3 -0.2 10 232-241 22-31 (46)
80 COG2191 Formylmethanofuran deh 32.4 19 0.00042 30.3 0.6 31 165-196 173-203 (206)
81 COG4847 Uncharacterized protei 30.9 22 0.00049 26.0 0.7 37 79-115 7-43 (103)
82 PF10764 Gin: Inhibitor of sig 30.8 30 0.00064 21.8 1.2 30 234-269 2-31 (46)
83 PF07649 C1_3: C1-like domain; 29.9 25 0.00055 19.6 0.7 10 108-117 2-11 (30)
84 KOG4443|consensus 29.1 24 0.00052 34.9 0.8 21 156-176 107-127 (694)
85 smart00291 ZnF_ZZ Zinc-binding 28.7 48 0.001 20.4 1.9 30 166-195 6-36 (44)
86 PF10170 C6_DPF: Cysteine-rich 28.4 15 0.00033 27.1 -0.5 42 233-277 51-92 (97)
87 KOG1734|consensus 28.3 24 0.00052 31.1 0.5 53 199-266 225-280 (328)
88 KOG0978|consensus 27.3 17 0.00037 36.4 -0.6 46 165-212 644-692 (698)
89 COG2075 RPL24A Ribosomal prote 27.0 40 0.00087 23.0 1.3 40 233-273 5-46 (66)
90 PF01927 Mut7-C: Mut7-C RNAse 26.7 35 0.00075 27.1 1.2 44 198-241 91-134 (147)
91 PF01258 zf-dskA_traR: Prokary 26.5 4.2 9E-05 24.1 -3.2 14 78-91 3-16 (36)
92 PF06689 zf-C4_ClpX: ClpX C4-t 26.5 50 0.0011 20.1 1.6 35 233-270 3-38 (41)
93 cd02340 ZZ_NBR1_like Zinc fing 26.4 43 0.00094 20.6 1.3 11 200-210 2-12 (43)
94 cd02249 ZZ Zinc finger, ZZ typ 26.3 62 0.0014 20.0 2.1 9 187-195 24-32 (46)
95 COG4357 Zinc finger domain con 26.1 8.7 0.00019 28.2 -2.1 11 139-149 63-73 (105)
96 PRK12495 hypothetical protein; 25.7 37 0.00079 29.0 1.2 11 254-264 56-66 (226)
97 PF13834 DUF4193: Domain of un 25.7 19 0.00041 26.7 -0.5 28 165-192 71-98 (99)
98 PF04570 DUF581: Protein of un 25.3 44 0.00096 22.2 1.3 27 166-192 18-45 (58)
99 cd02336 ZZ_RSC8 Zinc finger, Z 25.2 73 0.0016 19.9 2.2 30 166-195 2-32 (45)
100 KOG1829|consensus 24.9 28 0.0006 34.2 0.4 44 230-273 339-383 (580)
101 PHA02929 N1R/p28-like protein; 24.8 45 0.00097 29.0 1.6 15 77-91 173-187 (238)
102 PF03107 C1_2: C1 domain; Int 24.8 53 0.0011 18.4 1.4 11 81-91 3-13 (30)
103 PF00096 zf-C2H2: Zinc finger, 24.6 20 0.00043 18.3 -0.4 12 232-243 1-12 (23)
104 TIGR00270 conserved hypothetic 23.5 65 0.0014 25.9 2.2 31 167-199 3-35 (154)
105 PLN03208 E3 ubiquitin-protein 23.2 1E+02 0.0022 25.8 3.4 46 164-211 18-81 (193)
106 PF12677 DUF3797: Domain of un 23.1 71 0.0015 20.4 1.8 29 78-106 13-42 (49)
107 COG2174 RPL34A Ribosomal prote 22.9 52 0.0011 24.0 1.4 15 255-269 70-84 (93)
108 PF13639 zf-RING_2: Ring finge 22.5 26 0.00056 21.3 -0.2 10 201-210 3-12 (44)
109 PF06827 zf-FPG_IleRS: Zinc fi 22.3 25 0.00054 19.6 -0.3 11 199-209 2-12 (30)
110 COG4306 Uncharacterized protei 21.8 52 0.0011 25.5 1.3 47 128-175 29-79 (160)
111 PF13923 zf-C3HC4_2: Zinc fing 21.7 22 0.00048 21.1 -0.6 27 110-136 2-28 (39)
112 smart00659 RPOLCX RNA polymera 21.3 31 0.00067 21.5 -0.0 27 232-266 3-29 (44)
113 COG1656 Uncharacterized conser 21.1 38 0.00082 27.6 0.4 44 198-241 97-140 (165)
114 PF13901 DUF4206: Domain of un 20.9 56 0.0012 27.5 1.5 11 231-241 172-182 (202)
115 TIGR02605 CxxC_CxxC_SSSS putat 20.9 26 0.00057 22.2 -0.5 30 232-265 6-35 (52)
116 PF13451 zf-trcl: Probable zin 20.8 24 0.00052 22.6 -0.6 39 232-270 5-47 (49)
117 PF05502 Dynactin_p62: Dynacti 20.8 53 0.0011 31.7 1.4 36 140-175 28-63 (483)
118 TIGR03826 YvyF flagellar opero 20.8 45 0.00098 26.3 0.8 29 232-272 82-110 (137)
119 PF03854 zf-P11: P-11 zinc fin 20.8 37 0.0008 21.6 0.2 29 121-149 9-46 (50)
120 cd00472 Ribosomal_L24e_L24 Rib 20.7 69 0.0015 20.9 1.5 23 233-256 5-27 (54)
121 KOG3576|consensus 20.7 24 0.00052 29.8 -0.8 68 104-175 115-184 (267)
122 PRK14559 putative protein seri 20.1 72 0.0016 32.0 2.2 26 233-269 29-54 (645)
No 1
>KOG1701|consensus
Probab=100.00 E-value=4.3e-52 Score=368.73 Aligned_cols=202 Identities=59% Similarity=1.236 Sum_probs=194.3
Q ss_pred CCCCCCCCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeeccccccccccccccccccccc
Q psy15692 70 DTSSESDLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPIL 149 (278)
Q Consensus 70 ~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~ 149 (278)
+..+..+..++|.+|+|.|.++..++.||++.||..||+|..|++.|.++.||.+|+++||+.||.....+|..|++.|.
T Consensus 266 ~~~p~~~~~~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~ 345 (468)
T KOG1701|consen 266 EAEPVEDYFGICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIM 345 (468)
T ss_pred CCChhhhhhhhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHH
Confidence 34445566779999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCccccc
Q psy15692 150 DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHI 229 (278)
Q Consensus 150 ~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~ 229 (278)
|++|+|.|+.||+.||+|..|.+.|++..|+++.++++||..||+++||++|+.|+++|++.+|++|+++|+++|+.||.
T Consensus 346 d~iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv 425 (468)
T KOG1701|consen 346 DRILRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHV 425 (468)
T ss_pred HHHHHhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhcc
Q psy15692 230 GCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALT 271 (278)
Q Consensus 230 ~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~~ 271 (278)
+|++|+.|+..|+.+.+|.++|++|++++|+.|+.+|+++++
T Consensus 426 ~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~Ch~~Rl~~~~ 467 (468)
T KOG1701|consen 426 NCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKTCHLKRLQAGS 467 (468)
T ss_pred cceehhhcCccccccCCCCcceeccCceeechhhhhhhcccC
Confidence 999999999999988899999999999999999999998865
No 2
>KOG2272|consensus
Probab=99.97 E-value=4.8e-33 Score=231.85 Aligned_cols=175 Identities=30% Similarity=0.670 Sum_probs=154.6
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeeccccc-----------------------
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQG----------------------- 133 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~----------------------- 133 (278)
..+.|++|++-|+|+. |.+++.+||+.||+|..|++.|.+..|+...|+.+|..|
T Consensus 72 faPcC~kC~EFiiGrV--ikamnnSwHp~CF~Cd~Cn~~Lad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~KCh~~iD~ 149 (332)
T KOG2272|consen 72 FAPCCGKCGEFIIGRV--IKAMNNSWHPACFRCDLCNKHLADQGFYRNQGRALCRECNQKEKAKGRGRYVCQKCHAHIDE 149 (332)
T ss_pred hchhhcccccchhhHH--HHhhccccCcccchhHHHHHHHhhhhhHhhcchHHhhhhhhhhcccccceeehhhhhhhccc
Confidence 3568999999999986 499999999999999999999988777766655555443
Q ss_pred ----------------------------------------ccccc-cccccccccccccceEEcCCcCCcCeecCCCCCC
Q psy15692 134 ----------------------------------------YLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGK 172 (278)
Q Consensus 134 ----------------------------------------y~~~~-~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~ 172 (278)
+.+.. |+|..|.++|.+++|.++|+.||.++|+|+.|.+
T Consensus 150 ~~l~fr~d~yH~yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~Cek 229 (332)
T KOG2272|consen 150 QPLTFRGDPYHPYHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEK 229 (332)
T ss_pred ccccccCCCCCccceecccccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCC
Confidence 33222 8899999999999999999999999999999999
Q ss_pred CCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceee
Q psy15692 173 SLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYP 252 (278)
Q Consensus 173 ~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~ 252 (278)
|+-|...+ ++.|.+||+.||.++|+..|..|..+|.+. ++.++++.|.++||.|+.|++.|.. ..+||.
T Consensus 230 PFlGHrHY-EkkGlaYCe~h~~qLfG~~CF~C~~~i~G~-------vv~al~KawCv~cf~Cs~Cdkkl~~---K~Kf~E 298 (332)
T KOG2272|consen 230 PFLGHRHY-EKKGLAYCETHYHQLFGNLCFICNRVIGGD-------VVSALNKAWCVECFSCSTCDKKLTQ---KNKFYE 298 (332)
T ss_pred cccchhhh-hhcCchhHHHHHHHHhhhhheecCCccCcc-------HHHHhhhhhcccccccccccccccc---ccceee
Confidence 99887765 588999999999999999999999999765 6789999999999999999999985 458999
Q ss_pred cCCccccccchh
Q psy15692 253 LDDHVLCKSCNA 264 (278)
Q Consensus 253 ~~~~~~C~~C~~ 264 (278)
.|-+|.|+.||.
T Consensus 299 ~DmkP~CKkCy~ 310 (332)
T KOG2272|consen 299 FDMKPVCKKCYD 310 (332)
T ss_pred eccchHHHHHHh
Confidence 999999999997
No 3
>KOG2272|consensus
Probab=99.96 E-value=1.5e-32 Score=228.86 Aligned_cols=181 Identities=25% Similarity=0.594 Sum_probs=157.2
Q ss_pred cccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccccceEEcC
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILDRILRATG 157 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~~~~ 157 (278)
..|.+|...+...+.++...|..||..||.|++|-.|+.++.||..+|+.||+.||..++ |.|..|++.|.|++|.+++
T Consensus 13 ~~C~RC~~gF~~~e~~vns~ge~wH~~CFvCAQCf~pf~~g~~~efEgRkYCEhDF~~LfaPcC~kC~EFiiGrVikamn 92 (332)
T KOG2272|consen 13 MVCERCRDGFEPAEKIVNSNGELWHEQCFVCAQCFRPFPDGIFYEFEGRKYCEHDFHVLFAPCCGKCGEFIIGRVIKAMN 92 (332)
T ss_pred HHHHHHhccCCchhhhhccCchhhHHHHHHHHHhcCcCCCceeEEecCcccccccchhhhchhhcccccchhhHHHHhhc
Confidence 469999999888887778889999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CcCCcCeecCCCCCCCCCCCCeEEc-------------------------------------------------------
Q psy15692 158 RPYHPACFTCVVCGKSLDGIPFTVD------------------------------------------------------- 182 (278)
Q Consensus 158 ~~~H~~Cf~C~~C~~~l~~~~~~~~------------------------------------------------------- 182 (278)
..||+.||+|..|.+.|.+..|+..
T Consensus 93 nSwHp~CF~Cd~Cn~~Lad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~KCh~~iD~~~l~fr~d~yH~yHFkCt~C~ke 172 (332)
T KOG2272|consen 93 NSWHPACFRCDLCNKHLADQGFYRNQGRALCRECNQKEKAKGRGRYVCQKCHAHIDEQPLTFRGDPYHPYHFKCTTCGKE 172 (332)
T ss_pred cccCcccchhHHHHHHHhhhhhHhhcchHHhhhhhhhhcccccceeehhhhhhhcccccccccCCCCCccceeccccccc
Confidence 9999999999988887765544331
Q ss_pred -------CCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCC
Q psy15692 183 -------AANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255 (278)
Q Consensus 183 -------~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~ 255 (278)
..|.+||..|+.+.--|+|..|.+||... +|.++|+.||.++|+|+.|.+++- |-..|...|
T Consensus 173 L~sdaRevk~eLyClrChD~mgipiCgaC~rpIeer-------vi~amgKhWHveHFvCa~CekPFl----GHrHYEkkG 241 (332)
T KOG2272|consen 173 LTSDAREVKGELYCLRCHDKMGIPICGACRRPIEER-------VIFAMGKHWHVEHFVCAKCEKPFL----GHRHYEKKG 241 (332)
T ss_pred ccchhhhhccceeccccccccCCcccccccCchHHH-------HHHHhccccchhheeehhcCCccc----chhhhhhcC
Confidence 12345666666666667899999999732 577999999999999999999995 667899999
Q ss_pred ccccccchhHhhhhc
Q psy15692 256 HVLCKSCNAKRVQAL 270 (278)
Q Consensus 256 ~~~C~~C~~~~~~~~ 270 (278)
..||..+|.+.+..+
T Consensus 242 laYCe~h~~qLfG~~ 256 (332)
T KOG2272|consen 242 LAYCETHYHQLFGNL 256 (332)
T ss_pred chhHHHHHHHHhhhh
Confidence 999999999998776
No 4
>KOG1703|consensus
Probab=99.94 E-value=8.8e-28 Score=227.34 Aligned_cols=175 Identities=27% Similarity=0.614 Sum_probs=160.1
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccccceEEc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILDRILRAT 156 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~~~ 156 (278)
.+.|..|++.|.+... +.++++.||+.+|.|..|+..+....|...+|++||..||...+ ++|.+|.++|.+++|.+.
T Consensus 303 ~p~c~~c~~~i~~~~~-i~~~~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~~v~a~ 381 (479)
T KOG1703|consen 303 RPLCLSCNQKIRSVKV-IVALGKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEEGVCAL 381 (479)
T ss_pred cccccccccCccccee-EeeccccccccceeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHhHhhhc
Confidence 3799999999998443 69999999999999999999998888899999999999999887 999999999999999999
Q ss_pred CCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCC
Q psy15692 157 GRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCED 236 (278)
Q Consensus 157 ~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~ 236 (278)
++.||++||.|..|+++|.+..|+. .++.+||+.||++++.++|..|.++|.... ..+.+++..||..||+|..
T Consensus 382 ~~~wH~~cf~C~~C~~~~~~~~~~~-~~~~pyce~~~~~~~~~~~~~~~~p~~~~~-----~~ie~~~~~~h~~~F~c~~ 455 (479)
T KOG1703|consen 382 GRLWHPECFVCADCGKPLKNSSFFE-SDGEPYCEDHYKKLFTTKCDYCKKPVEFGS-----RQIEADGSPFHGDCFRCAN 455 (479)
T ss_pred cCeechhceeeecccCCCCCCcccc-cCCccchhhhHhhhccccchhccchhHhhh-----hHhhccCccccccceehhh
Confidence 9999999999999999999888775 789999999999999999999999987432 2578999999999999999
Q ss_pred CCCCCCCCcCCCceeecCCccccccch
Q psy15692 237 CGLVLSSEAEGRGCYPLDDHVLCKSCN 263 (278)
Q Consensus 237 C~~~l~~~~~g~~~~~~~~~~~C~~C~ 263 (278)
|.+.|. +..|+...++++|..|+
T Consensus 456 c~~~l~----~~~~~~~~~~p~c~~~~ 478 (479)
T KOG1703|consen 456 CMKKLT----KKTFFETLDKPLCQKHF 478 (479)
T ss_pred hhcccc----CCceeecCCccccccCC
Confidence 999997 56799999999999885
No 5
>KOG1044|consensus
Probab=99.92 E-value=1.1e-25 Score=206.98 Aligned_cols=173 Identities=27% Similarity=0.586 Sum_probs=148.6
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCC-eecccc---------------------ccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEG-HAYCEQ---------------------GYL 135 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g-~~yC~~---------------------~y~ 135 (278)
...|.+|+++-.++. +.+.++.||..||.|..|+..|+...||.+++ +.|+.. |+.
T Consensus 16 ~i~c~~c~~kc~gev--lrv~d~~fhi~cf~c~~cg~~la~~gff~k~~~~~ygt~~c~~~~~gevvsa~gktyh~~cf~ 93 (670)
T KOG1044|consen 16 GIKCDKCRKKCSGEV--LRVNDNHFHINCFQCKKCGRNLAEGGFFTKPENRLYGTDDCRAFVEGEVVSTLGKTYHPKCFS 93 (670)
T ss_pred ceehhhhCCccccce--eEeeccccceeeeeccccCCCcccccceecccceeecccchhhhccceeEecccceeccccce
Confidence 457999999998875 69999999999999999999999888887765 455542 220
Q ss_pred -----------------------------------c--ccccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCC
Q psy15692 136 -----------------------------------D--TLEKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGI 177 (278)
Q Consensus 136 -----------------------------------~--~~~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~ 177 (278)
+ ....|++|++.|. ++++.|+++.||..||+|..|...|.++
T Consensus 94 cs~ck~pf~~g~~vt~~gk~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llald~qwhv~cfkc~~c~~vL~ge 173 (670)
T KOG1044|consen 94 CSTCKSPFKSGDKVTFSGKECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLALDKQWHVSCFKCKSCSAVLNGE 173 (670)
T ss_pred ecccCCCCCCCCeeeecchhhhhhhhcCcccCCcccccCCccccchhhhhhccceeeeeccceeeeeeehhhhcccccce
Confidence 0 1146999999885 7899999999999999999999999998
Q ss_pred CeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCcc
Q psy15692 178 PFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257 (278)
Q Consensus 178 ~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~ 257 (278)
++. ++|.+||+.||.+.|+.+|..|.+.|.+. ++.+.|++||+.|-+|..|+..|. +|.+.|+....+
T Consensus 174 y~s--kdg~pyce~dy~~~fgvkc~~c~~fisgk-------vLqag~kh~HPtCARCsRCgqmF~---eGEEMYlQGs~i 241 (670)
T KOG1044|consen 174 YMS--KDGVPYCEKDYQAKFGVKCEECEKFISGK-------VLQAGDKHFHPTCARCSRCGQMFG---EGEEMYLQGSEI 241 (670)
T ss_pred eec--cCCCcchhhhhhhhcCeehHHhhhhhhhh-------hhhccCcccCcchhhhhhhccccc---cchheeeccccc
Confidence 764 68999999999999999999999999875 678999999999999999999998 577899998888
Q ss_pred ccccchh
Q psy15692 258 LCKSCNA 264 (278)
Q Consensus 258 ~C~~C~~ 264 (278)
+-..|-.
T Consensus 242 WHP~C~q 248 (670)
T KOG1044|consen 242 WHPDCKQ 248 (670)
T ss_pred cCCcccc
Confidence 8888763
No 6
>KOG4577|consensus
Probab=99.84 E-value=4.5e-23 Score=175.17 Aligned_cols=125 Identities=30% Similarity=0.651 Sum_probs=109.6
Q ss_pred ccccccccccccccc-eEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCc
Q psy15692 138 LEKCSVCVKPILDRI-LRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDE 216 (278)
Q Consensus 138 ~~~C~~C~~~I~~~~-~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~ 216 (278)
.++|+.|.+.|.+++ ++++++.||..|++|+.|..+|....|. ++|.+||+++|+++|+.+|.+|...|.+..
T Consensus 33 ip~CagC~q~IlDrFilKvl~R~wHs~CLkCs~C~~qL~drCFs--R~~s~yCkedFfKrfGTKCsaC~~GIpPtq---- 106 (383)
T KOG4577|consen 33 IPICAGCDQHILDRFILKVLDRHWHSSCLKCSDCHDQLADRCFS--REGSVYCKEDFFKRFGTKCSACQEGIPPTQ---- 106 (383)
T ss_pred cccccchHHHHHHHHHHHHHhhhhhhhhcchhhhhhHHHHHHhh--cCCceeehHHHHHHhCCcchhhcCCCChHH----
Confidence 389999999999975 5889999999999999999999998885 579999999999999999999999999874
Q ss_pred eeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeec-CCccccccchhHhhhhccc
Q psy15692 217 TVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPL-DDHVLCKSCNAKRVQALTS 272 (278)
Q Consensus 217 ~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~-~~~~~C~~C~~~~~~~~~~ 272 (278)
++-.|.+..||..||.|..|++.|.. |++||+. |.+++|+..|....+.--|
T Consensus 107 -VVRkAqd~VYHl~CF~C~iC~R~L~T---GdEFYLmeD~rLvCK~DYE~Ak~k~~~ 159 (383)
T KOG4577|consen 107 -VVRKAQDFVYHLHCFACFICKRQLAT---GDEFYLMEDARLVCKDDYETAKQKHCN 159 (383)
T ss_pred -HHHHhhcceeehhhhhhHhhhccccc---CCeeEEeccceeehhhhHHHHHhcccc
Confidence 23358899999999999999999984 7789988 5689999999766555444
No 7
>KOG4577|consensus
Probab=99.81 E-value=2.4e-22 Score=170.81 Aligned_cols=123 Identities=28% Similarity=0.690 Sum_probs=111.4
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccc-cce-
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILD-RIL- 153 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~-~~~- 153 (278)
.+++|++|.+.|.++.+ ++++++.||..|++|+.|..+|... +|.++|.+||+++|+++| .+|..|...|.. ++|
T Consensus 32 eip~CagC~q~IlDrFi-lKvl~R~wHs~CLkCs~C~~qL~dr-CFsR~~s~yCkedFfKrfGTKCsaC~~GIpPtqVVR 109 (383)
T KOG4577|consen 32 EIPICAGCDQHILDRFI-LKVLDRHWHSSCLKCSDCHDQLADR-CFSREGSVYCKEDFFKRFGTKCSACQEGIPPTQVVR 109 (383)
T ss_pred ccccccchHHHHHHHHH-HHHHhhhhhhhhcchhhhhhHHHHH-HhhcCCceeehHHHHHHhCCcchhhcCCCChHHHHH
Confidence 46789999999999986 8999999999999999999999875 788899999999999999 799999999974 454
Q ss_pred EEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCCCC
Q psy15692 154 RATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAPRC 201 (278)
Q Consensus 154 ~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~~C 201 (278)
+|.+.+||..||.|..|++.|. |..|++..+.++.|+++|+..-...|
T Consensus 110 kAqd~VYHl~CF~C~iC~R~L~TGdEFYLmeD~rLvCK~DYE~Ak~k~~ 158 (383)
T KOG4577|consen 110 KAQDFVYHLHCFACFICKRQLATGDEFYLMEDARLVCKDDYETAKQKHC 158 (383)
T ss_pred HhhcceeehhhhhhHhhhcccccCCeeEEeccceeehhhhHHHHHhccc
Confidence 6889999999999999999998 88888888999999999988766665
No 8
>KOG1703|consensus
Probab=99.81 E-value=1.8e-20 Score=177.61 Aligned_cols=174 Identities=22% Similarity=0.381 Sum_probs=155.8
Q ss_pred cccCCCeeeCCcceeeeCCccccccccccc-ccCcccCCCCeEeeCCeecccccccccc-cccccccccccc-cceEEcC
Q psy15692 81 CCKCGERILGEGSGCTAMDKVYHISCFTCD-HCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILD-RILRATG 157 (278)
Q Consensus 81 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~-~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~-~~~~~~~ 157 (278)
|+.+..+|.+.- +.+....||...|+|. .+...|....++...+..++..+|.... ++|..|.+.|.+ +++.+++
T Consensus 246 ~~~~~~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~c~~c~~~i~~~~~i~~~~ 323 (479)
T KOG1703|consen 246 SASMDSPECQPL--VSAPRPASEGLHMKVEKELPLLLVESEALKKLREEEKPAEYHNVTRPLCLSCNQKIRSVKVIVALG 323 (479)
T ss_pred CcccCCCccCcc--eecccccccccccccccccchhhcccccccccccccccccccccccccccccccCcccceeEeecc
Confidence 677777777643 5788999999999998 7999998889999999999999997655 899999999999 9999999
Q ss_pred CcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCC
Q psy15692 158 RPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDC 237 (278)
Q Consensus 158 ~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C 237 (278)
+.||+.+|.|..|...+....+ ...+|++||..||++.++++|.+|+++|.+. .|.+.++.||++||.|..|
T Consensus 324 ~~~h~~~~~c~~~~~~~~~~~~-~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~-------~v~a~~~~wH~~cf~C~~C 395 (479)
T KOG1703|consen 324 KEWHPEHFSCEVCAIVILDGGP-RELDGKILCHECFHAPFRPNCKRCLLPILEE-------GVCALGRLWHPECFVCADC 395 (479)
T ss_pred ccccccceeeccccccccCCCc-cccCCCccHHHHHHHhhCccccccCCchHHh-------HhhhccCeechhceeeecc
Confidence 9999999999999999986666 3478999999999999999999999999865 6778899999999999999
Q ss_pred CCCCCCCcCCCceeecCCccccccchhHhhh
Q psy15692 238 GLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQ 268 (278)
Q Consensus 238 ~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~ 268 (278)
++.|.+ ..||..++.+||..|+.+++.
T Consensus 396 ~~~~~~----~~~~~~~~~pyce~~~~~~~~ 422 (479)
T KOG1703|consen 396 GKPLKN----SSFFESDGEPYCEDHYKKLFT 422 (479)
T ss_pred cCCCCC----CcccccCCccchhhhHhhhcc
Confidence 999974 569999999999999998875
No 9
>KOG1701|consensus
Probab=99.78 E-value=3.3e-21 Score=172.22 Aligned_cols=119 Identities=25% Similarity=0.540 Sum_probs=105.1
Q ss_pred cccccccccccc--cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCc
Q psy15692 139 EKCSVCVKPILD--RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDE 216 (278)
Q Consensus 139 ~~C~~C~~~I~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~ 216 (278)
.+|..|+|.|.+ ..+.|+++.||..||+|..|++.|.+..|+. .++++||+.||.. ...||..|+++|+..
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~-v~~k~~CE~cyq~-tlekC~~Cg~~I~d~----- 347 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQ-VDGKPYCEGCYQD-TLEKCNKCGEPIMDR----- 347 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccc-cCCcccchHHHHH-HHHHHhhhhhHHHHH-----
Confidence 699999999985 4789999999999999999999999999875 7999999999965 458999999999854
Q ss_pred eeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeec-CCccccccchhHhhhhc
Q psy15692 217 TVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPL-DDHVLCKSCNAKRVQAL 270 (278)
Q Consensus 217 ~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~-~~~~~C~~C~~~~~~~~ 270 (278)
++.|+|+.||+.||+|.+|++.|.+ ..|.+. ++++||..+|.++++..
T Consensus 348 --iLrA~GkayHp~CF~Cv~C~r~ldg----ipFtvd~~n~v~Cv~dfh~kfAPr 396 (468)
T KOG1701|consen 348 --ILRALGKAYHPGCFTCVVCARCLDG----IPFTVDSQNNVYCVPDFHKKFAPR 396 (468)
T ss_pred --HHHhcccccCCCceEEEEeccccCC----ccccccCCCceeeehhhhhhcCcc
Confidence 6789999999999999999999974 456554 67999999999988765
No 10
>KOG1044|consensus
Probab=99.69 E-value=1e-17 Score=154.62 Aligned_cols=110 Identities=32% Similarity=0.743 Sum_probs=97.5
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccccceE
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILDRILR 154 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~ 154 (278)
.+...|++|++.|..+.. |.|+++.||..||+|..|+..|.+ .|+.++|.+||+.||.+.| .+|..|.+.|.+++|+
T Consensus 131 ~~ps~cagc~~~lk~gq~-llald~qwhv~cfkc~~c~~vL~g-ey~skdg~pyce~dy~~~fgvkc~~c~~fisgkvLq 208 (670)
T KOG1044|consen 131 YGPSTCAGCGEELKNGQA-LLALDKQWHVSCFKCKSCSAVLNG-EYMSKDGVPYCEKDYQAKFGVKCEECEKFISGKVLQ 208 (670)
T ss_pred cCCccccchhhhhhccce-eeeeccceeeeeeehhhhcccccc-eeeccCCCcchhhhhhhhcCeehHHhhhhhhhhhhh
Confidence 456689999999987765 799999999999999999999977 4999999999999999998 7999999999999999
Q ss_pred EcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCccc
Q psy15692 155 ATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIH 188 (278)
Q Consensus 155 ~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~ 188 (278)
|.|+.||+.|.+|+.|+++|+ |+..++ .+..++
T Consensus 209 ag~kh~HPtCARCsRCgqmF~eGEEMYl-QGs~iW 242 (670)
T KOG1044|consen 209 AGDKHFHPTCARCSRCGQMFGEGEEMYL-QGSEIW 242 (670)
T ss_pred ccCcccCcchhhhhhhccccccchheee-cccccc
Confidence 999999999999999999998 666665 333443
No 11
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=99.51 E-value=8.2e-15 Score=99.00 Aligned_cols=58 Identities=34% Similarity=0.845 Sum_probs=53.3
Q ss_pred cccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc
Q psy15692 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138 (278)
Q Consensus 81 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~ 138 (278)
|++|+++|.+.+..+.++|+.||++||+|..|+.+|.+..|+..+|++||+.||.++|
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~f 58 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKRF 58 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHHT
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccccccCCCCCccCCCeeEeECCEEECHHHHhhhC
Confidence 8899999998887557999999999999999999999888999999999999998754
No 12
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=99.36 E-value=6e-13 Score=89.80 Aligned_cols=58 Identities=31% Similarity=0.779 Sum_probs=50.6
Q ss_pred CcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhh
Q psy15692 201 CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRV 267 (278)
Q Consensus 201 C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~ 267 (278)
|.+|+++|.+.+ ..+.+.|+.||++||+|..|+++|... .|+..++++||..|+.+++
T Consensus 1 C~~C~~~I~~~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~----~~~~~~~~~~C~~c~~~~f 58 (58)
T PF00412_consen 1 CARCGKPIYGTE-----IVIKAMGKFWHPECFKCSKCGKPLNDG----DFYEKDGKPYCKDCYQKRF 58 (58)
T ss_dssp BTTTSSBESSSS-----EEEEETTEEEETTTSBETTTTCBTTTS----SEEEETTEEEEHHHHHHHT
T ss_pred CCCCCCCccCcE-----EEEEeCCcEEEccccccCCCCCccCCC----eeEeECCEEECHHHHhhhC
Confidence 789999999764 345799999999999999999999842 4999999999999998874
No 13
>KOG1700|consensus
Probab=99.10 E-value=1.5e-11 Score=103.60 Aligned_cols=120 Identities=27% Similarity=0.615 Sum_probs=96.6
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCC-----------------
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR----------------- 200 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~----------------- 200 (278)
.+|..|++.+. -..+...|..||..||+|..|.+.|....+.. .++.+||..+|..+++++
T Consensus 8 ~kc~~c~k~vy~~e~~~~~g~~~hk~c~~c~~~~k~l~~~~~~~-~e~~~yc~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
T KOG1700|consen 8 DKCNACGKTVYFVEKVQKDGVDFHKECFKCEKCKKTLTLSGYSE-HEGVPYCKNCHVAQFGPKGGGFGKGFQKAGGLGKD 86 (200)
T ss_pred chhhhccCcchHHHHHhccCcchhhhHHhccccccccccccccc-cccccccccchHhhhCcccccccccccccCCCCcc
Confidence 58999999996 34455889999999999999999999666665 689999999665554442
Q ss_pred ------------------------CcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCc
Q psy15692 201 ------------------------CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDH 256 (278)
Q Consensus 201 ------------------------C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~ 256 (278)
|..|++.+.+.+ .+...+..||..||+|+.|+..|+.. .+-..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~c~~c~k~vy~~E------k~~~~~~~~hk~cfrc~~~~~~ls~~----~~~~~~g~ 156 (200)
T KOG1700|consen 87 GKSLNESKPNQSAKFQVFAGEKEKCARCQKTVYPLE------KVTGNGLEFHKSCFRCTHCGKKLSPK----NYAALEGV 156 (200)
T ss_pred cccccccccccchhHHhhhccccccccccceeeehH------HHhhhhhhhhhhheeecccccccCCc----chhhcCCc
Confidence 899999988665 56788999999999999999999863 36667888
Q ss_pred cccccchhHhhhh
Q psy15692 257 VLCKSCNAKRVQA 269 (278)
Q Consensus 257 ~~C~~C~~~~~~~ 269 (278)
+||...+...+-.
T Consensus 157 l~~~~~~~~~~~~ 169 (200)
T KOG1700|consen 157 LYCKHHFAQLFKG 169 (200)
T ss_pred cccchhhheeecC
Confidence 8888877665433
No 14
>KOG1700|consensus
Probab=99.09 E-value=1.6e-11 Score=103.38 Aligned_cols=117 Identities=26% Similarity=0.618 Sum_probs=97.1
Q ss_pred cccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccc----------------------
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLD---------------------- 136 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~---------------------- 136 (278)
..|..|++.|+-.+. +...|..||..||+|..|...|....+...++.+||+.+|..
T Consensus 8 ~kc~~c~k~vy~~e~-~~~~g~~~hk~c~~c~~~~k~l~~~~~~~~e~~~yc~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
T KOG1700|consen 8 DKCNACGKTVYFVEK-VQKDGVDFHKECFKCEKCKKTLTLSGYSEHEGVPYCKNCHVAQFGPKGGGFGKGFQKAGGLGKD 86 (200)
T ss_pred chhhhccCcchHHHH-HhccCcchhhhHHhccccccccccccccccccccccccchHhhhCcccccccccccccCCCCcc
Confidence 369999999997775 578899999999999999999998888999999999995410
Q ss_pred -------------c-------ccccccccccccc-cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhc
Q psy15692 137 -------------T-------LEKCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHK 195 (278)
Q Consensus 137 -------------~-------~~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 195 (278)
. ...|..|++.+.. +-+...+..||..||+|..|+..|+...+.. ..+.+||..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~c~~c~k~vy~~Ek~~~~~~~~hk~cfrc~~~~~~ls~~~~~~-~~g~l~~~~~~~~ 165 (200)
T KOG1700|consen 87 GKSLNESKPNQSAKFQVFAGEKEKCARCQKTVYPLEKVTGNGLEFHKSCFRCTHCGKKLSPKNYAA-LEGVLYCKHHFAQ 165 (200)
T ss_pred cccccccccccchhHHhhhccccccccccceeeehHHHhhhhhhhhhhheeecccccccCCcchhh-cCCccccchhhhe
Confidence 0 0469999999874 4567789999999999999999999777764 5788898877655
Q ss_pred cc
Q psy15692 196 KF 197 (278)
Q Consensus 196 ~~ 197 (278)
++
T Consensus 166 ~~ 167 (200)
T KOG1700|consen 166 LF 167 (200)
T ss_pred ee
Confidence 44
No 15
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=98.64 E-value=1.9e-08 Score=61.66 Aligned_cols=38 Identities=37% Similarity=0.827 Sum_probs=33.6
Q ss_pred ccccCCCeeeCCcceeeeCCcccccccccccccCcccC
Q psy15692 80 ECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE 117 (278)
Q Consensus 80 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 117 (278)
.|.+|+++|.+.+..+.++++.||++||+|..|+.+|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCCCcccCCcCc
Confidence 48999999998744578999999999999999999885
No 16
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=98.53 E-value=5.2e-08 Score=59.65 Aligned_cols=36 Identities=53% Similarity=1.133 Sum_probs=32.6
Q ss_pred ccccccccccc--cceEEcCCcCCcCeecCCCCCCCCC
Q psy15692 140 KCSVCVKPILD--RILRATGRPYHPACFTCVVCGKSLD 175 (278)
Q Consensus 140 ~C~~C~~~I~~--~~~~~~~~~~H~~Cf~C~~C~~~l~ 175 (278)
+|..|+++|.+ ..+.+.++.||++||+|..|+++|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCCCcccCCcCc
Confidence 58999999986 6788899999999999999999885
No 17
>KOG0490|consensus
Probab=97.76 E-value=3.7e-06 Score=72.42 Aligned_cols=111 Identities=30% Similarity=0.604 Sum_probs=89.4
Q ss_pred cCCCeeeCCcceeeeCCcccccccccccccCcccC-CCCeEeeCCeecccccccc--cc-ccccccccccc--ccceEEc
Q psy15692 83 KCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE-GKPFYIIEGHAYCEQGYLD--TL-EKCSVCVKPIL--DRILRAT 156 (278)
Q Consensus 83 ~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f~~~~g~~yC~~~y~~--~~-~~C~~C~~~I~--~~~~~~~ 156 (278)
.|+..|.+... +.+.+..||..|..|..|...|. ....+..+|..||..+|.. .+ .+|.+|...|. +.+..+.
T Consensus 1 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~rr~rt~~~~~ql~~ler~f 79 (235)
T KOG0490|consen 1 GCGRQILDRYL-LRVLDRYWHASCLKCAECDNPLGVGDTCFSKDGSIYCKRDYQREFKFSKRCARCKFTISQLDELERAF 79 (235)
T ss_pred CCCccccchHH-hhcccHHHHHHHHhhhhhcchhccCCCcccCCCcccccccchhhhhccccccCCCCCcCHHHHHHHhh
Confidence 47788888775 78889999999999999999997 2334444999999999997 34 69999999995 4566777
Q ss_pred CCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhc
Q psy15692 157 GRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHK 195 (278)
Q Consensus 157 ~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~ 195 (278)
.+. |..||.|..|...+. +..+.+..+.+..|..++.+
T Consensus 80 ~~~-h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~ 118 (235)
T KOG0490|consen 80 EKV-HLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKE 118 (235)
T ss_pred cCC-CcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhh
Confidence 777 999999999988665 66777766668888887654
No 18
>KOG1702|consensus
Probab=97.57 E-value=8.4e-06 Score=67.25 Aligned_cols=57 Identities=26% Similarity=0.633 Sum_probs=50.9
Q ss_pred cccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccc
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLD 136 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~ 136 (278)
..|..|++.+++-+. +..+++.||..||+|..|+.+|..+.+--.+.++||..+|-+
T Consensus 5 ~n~~~cgk~vYPvE~-v~cldk~whk~cfkce~c~mtlnmKnyKgy~kkpycn~hYpk 61 (264)
T KOG1702|consen 5 CNREDCGKTVYPVEE-VKCLDKVWHKQCFKCEVCGMTLNMKNYKGYDKKPYCNPHYPK 61 (264)
T ss_pred chhhhhccccccHHH-HhhHHHHHHHHhheeeeccCChhhhhccccccCCCcCccccc
Confidence 348899999998875 799999999999999999999998877778999999999954
No 19
>KOG0490|consensus
Probab=97.10 E-value=4.8e-05 Score=65.47 Aligned_cols=112 Identities=27% Similarity=0.575 Sum_probs=87.1
Q ss_pred cccccccc-ceEEcCCcCCcCeecCCCCCCCCC--CCCeEEcCCCcccchhhhhc--ccCCCCcccCccccCCCCCCcee
Q psy15692 144 CVKPILDR-ILRATGRPYHPACFTCVVCGKSLD--GIPFTVDAANQIHCIQDFHK--KFAPRCCVCRAPIMPDSEQDETV 218 (278)
Q Consensus 144 C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~~C~~~y~~--~~~~~C~~C~~~I~~~~~~~~~~ 218 (278)
|+..|.+. .+.+.+..||..|..|..|...|. ...|. .+|..||..+|.. .+..+|.+|...|...+ .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~d~~~~~~~~~rr~rt~~~~~ql~-----~ 74 (235)
T KOG0490|consen 2 CGRQILDRYLLRVLDRYWHASCLKCAECDNPLGVGDTCFS--KDGSIYCKRDYQREFKFSKRCARCKFTISQLD-----E 74 (235)
T ss_pred CCccccchHHhhcccHHHHHHHHhhhhhcchhccCCCccc--CCCcccccccchhhhhccccccCCCCCcCHHH-----H
Confidence 66777765 356679999999999999999997 44454 3899999999998 88899999999996543 1
Q ss_pred EEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCC-ccccccchhHh
Q psy15692 219 RVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD-HVLCKSCNAKR 266 (278)
Q Consensus 219 ~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~-~~~C~~C~~~~ 266 (278)
...+..+. |.-||.|..|.+.+.. +.++.+..+ +..|...+.+.
T Consensus 75 ler~f~~~-h~Pd~~~r~~la~~~~---~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 75 LERAFEKV-HLPCFACRECLALLLT---GDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred HHHhhcCC-CcCccchHHHHhhcCC---CCeeeeehhhhhhcHhhhhhh
Confidence 23355555 9999999999998875 445666665 88888888655
No 20
>KOG1702|consensus
Probab=96.63 E-value=0.00017 Score=59.66 Aligned_cols=60 Identities=22% Similarity=0.474 Sum_probs=48.1
Q ss_pred cccccccccccc-cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCC
Q psy15692 139 EKCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199 (278)
Q Consensus 139 ~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~ 199 (278)
..|..|++.+.. +-|..+++.||..||+|..|+..|.-..+-. .+.++||..+|.+..+.
T Consensus 5 ~n~~~cgk~vYPvE~v~cldk~whk~cfkce~c~mtlnmKnyKg-y~kkpycn~hYpkq~at 65 (264)
T KOG1702|consen 5 CNREDCGKTVYPVEEVKCLDKVWHKQCFKCEVCGMTLNMKNYKG-YDKKPYCNPHYPKQVAT 65 (264)
T ss_pred chhhhhccccccHHHHhhHHHHHHHHhheeeeccCChhhhhccc-cccCCCcCcccccceee
Confidence 456778888764 4578889999999999999999998666642 46799999999876543
No 21
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=89.44 E-value=0.2 Score=30.18 Aligned_cols=33 Identities=36% Similarity=0.666 Sum_probs=25.0
Q ss_pred cccCCCeeeCCcceeeeCCcccccccccccccCccc
Q psy15692 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL 116 (278)
Q Consensus 81 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 116 (278)
|.-||++|.++-+.+...++.||.-| ..|...|
T Consensus 1 Cd~CG~~I~~eP~~~k~~~~~y~fCC---~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKIGNKVYYFCC---PTCLSQF 33 (37)
T ss_pred CCccCCcccCCEEEEEECCeEEEEEC---HHHHHHH
Confidence 77899999988877888999998544 4444433
No 22
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.99 E-value=0.48 Score=35.23 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCccccccCCCeeeCCcceeeeCCccccccccc
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFT 108 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~ 108 (278)
.....|..|+++|....+.+.-.|..+|..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 445679999999987665445567789988864
No 23
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.64 E-value=0.37 Score=31.56 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=24.7
Q ss_pred ccccccCCCeeeCCcceee--eCCcccccccc----cccc--cCcc
Q psy15692 78 FGECCKCGERILGEGSGCT--AMDKVYHISCF----TCDH--CAVQ 115 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~--~~~~~~H~~Cf----~C~~--C~~~ 115 (278)
...|..|+++|..++-+|. .-+..||++|. .|.. |+.+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCC
Confidence 3579999999963332232 34789999987 5554 5443
No 24
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.96 E-value=1.1 Score=29.43 Aligned_cols=40 Identities=25% Similarity=0.604 Sum_probs=26.9
Q ss_pred cCCCCcccCccccCCCCCCceeEEE--cCCcccccCCc----ccCC--CCCCC
Q psy15692 197 FAPRCCVCRAPIMPDSEQDETVRVV--ALDRSFHIGCY----RCED--CGLVL 241 (278)
Q Consensus 197 ~~~~C~~C~~~I~~~~~~~~~~~v~--~~~~~~H~~Cf----~C~~--C~~~l 241 (278)
.+.+|..|+++|.+++. +|+ .-+..||.+|+ .|.. |+..+
T Consensus 4 ~~~~C~~Cg~~~~~~dD-----iVvCp~CgapyHR~C~~~~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDD-----IVVCPECGAPYHRDCWEKAGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCC-----EEECCCCCCcccHHHHhhCCceEeccCCCCc
Confidence 36789999999975542 332 44778888888 3655 55544
No 25
>KOG2462|consensus
Probab=81.97 E-value=0.38 Score=42.12 Aligned_cols=123 Identities=15% Similarity=0.306 Sum_probs=65.9
Q ss_pred cccccccccCcccCCCCeEeeCCeecccccccccccccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcC
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDA 183 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~ 183 (278)
...++|..|++.++...-..+..+.-|..+- +....|..|++.-...-...+-..-|.-=+.|..|++.|.- .+.+
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s-~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR-PWLL-- 203 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDS-KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR-PWLL-- 203 (279)
T ss_pred CCceeccccccccccccccchhhcccccccc-cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc-hHHh--
Confidence 4678899999888754434444455554443 33367888888664321122222345444678899987751 1111
Q ss_pred CCcccchhhhhcccCC---CCcccCccccCCCCCCceeEEEc-CCcccccCCcccCCCCCCCC
Q psy15692 184 ANQIHCIQDFHKKFAP---RCCVCRAPIMPDSEQDETVRVVA-LDRSFHIGCYRCEDCGLVLS 242 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~---~C~~C~~~I~~~~~~~~~~~v~~-~~~~~H~~Cf~C~~C~~~l~ 242 (278)
+|.+ ..-.+. .|..|++...+... +.+ +.-.=+.+=|.|..|++.|.
T Consensus 204 QGHi------RTHTGEKPF~C~hC~kAFADRSN------LRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 204 QGHI------RTHTGEKPFSCPHCGKAFADRSN------LRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred hccc------ccccCCCCccCCcccchhcchHH------HHHHHHhhcCCccccCcchhhHHH
Confidence 1211 111111 37778877753321 111 11122345688888888876
No 26
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=78.03 E-value=1.3 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=23.6
Q ss_pred CcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCC
Q psy15692 201 CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVL 241 (278)
Q Consensus 201 C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l 241 (278)
|.-|+++|.++. +.+...++.|| |.|..|.+.|
T Consensus 1 Cd~CG~~I~~eP-----~~~k~~~~~y~---fCC~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGEP-----IVVKIGNKVYY---FCCPTCLSQF 33 (37)
T ss_pred CCccCCcccCCE-----EEEEECCeEEE---EECHHHHHHH
Confidence 677999998653 56778889998 5566665444
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=72.98 E-value=5.5 Score=24.59 Aligned_cols=40 Identities=20% Similarity=0.485 Sum_probs=28.1
Q ss_pred CCCCCCCCC-CCCeEEcCCCcccchhhhhccc--CCCCcccCc
Q psy15692 167 CVVCGKSLD-GIPFTVDAANQIHCIQDFHKKF--APRCCVCRA 206 (278)
Q Consensus 167 C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~--~~~C~~C~~ 206 (278)
|..|...+. ...+.+..=|..+|..|..+.. ...|..|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 667777773 3445555668899999988777 567777764
No 28
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=71.17 E-value=4.2 Score=27.66 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=23.1
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDS 212 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~ 212 (278)
++|+.|...|.. ...+..=+.+||..|-...++..|..|+.|....+
T Consensus 8 LrCs~C~~~l~~-pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKE-PVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS--B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcC-CceeccCccHHHHHHhHHhcCCCCCCcCChHHHHH
Confidence 467778776653 22222346789999998888999999999876543
No 29
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=69.51 E-value=2 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.1
Q ss_pred ccccCCCeeeCCcceeeeCCcccccccccccc
Q psy15692 80 ECCKCGERILGEGSGCTAMDKVYHISCFTCDH 111 (278)
Q Consensus 80 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 111 (278)
.|..|+++|+.+.......+..-|..||+=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~kG~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKKGPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecCCcEeHHHHHHHH
Confidence 59999999987765333345688988987543
No 30
>PF12773 DZR: Double zinc ribbon
Probab=67.83 E-value=4.2 Score=25.75 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=2.8
Q ss_pred cccCccc
Q psy15692 110 DHCAVQL 116 (278)
Q Consensus 110 ~~C~~~l 116 (278)
..|+.+|
T Consensus 16 ~~CG~~l 22 (50)
T PF12773_consen 16 PHCGTPL 22 (50)
T ss_pred hhhcCCh
Confidence 3344443
No 31
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=66.29 E-value=3.4 Score=32.22 Aligned_cols=23 Identities=35% Similarity=0.918 Sum_probs=19.1
Q ss_pred ccCCCCCCCCCCcCCCceeecCCccccccchh
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNA 264 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~ 264 (278)
.|..|+.+| |.++|.+||..|-.
T Consensus 30 hCp~Cg~PL---------F~KdG~v~CPvC~~ 52 (131)
T COG1645 30 HCPKCGTPL---------FRKDGEVFCPVCGY 52 (131)
T ss_pred hCcccCCcc---------eeeCCeEECCCCCc
Confidence 488899998 34899999999983
No 32
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=64.51 E-value=5.1 Score=29.57 Aligned_cols=27 Identities=37% Similarity=0.747 Sum_probs=13.3
Q ss_pred cccccccccccccc-eEE-cCCcCCcCee
Q psy15692 139 EKCSVCVKPILDRI-LRA-TGRPYHPACF 165 (278)
Q Consensus 139 ~~C~~C~~~I~~~~-~~~-~~~~~H~~Cf 165 (278)
..|..|+++|.... +.. .|..+|..|+
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeEEecccc
Confidence 34666666665432 222 3445555554
No 33
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=64.12 E-value=3.8 Score=24.46 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=18.9
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchhH
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAK 265 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~ 265 (278)
+.|..|+..+ |+..+|..||..|..+
T Consensus 9 ~~C~~C~~~~--------~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRW--------FYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeE--------eEccCCEEEhhhCceE
Confidence 3588887653 5677889999888643
No 34
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=63.97 E-value=4 Score=29.72 Aligned_cols=36 Identities=31% Similarity=0.748 Sum_probs=23.4
Q ss_pred cccccCcccCCCCeEeeCCeecccccccccccccccccccccc
Q psy15692 108 TCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILD 150 (278)
Q Consensus 108 ~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~~ 150 (278)
.|..|+..+.. .|.-||..|..+. .+|+.|++.|.+
T Consensus 46 ~C~~CK~~v~q------~g~~YCq~CAYkk-GiCamCGKki~d 81 (90)
T PF10235_consen 46 KCKICKTKVHQ------PGAKYCQTCAYKK-GICAMCGKKILD 81 (90)
T ss_pred ccccccccccc------CCCccChhhhccc-CcccccCCeecc
Confidence 46666655533 2566888885532 588888888864
No 35
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=63.47 E-value=3.8 Score=21.79 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=6.4
Q ss_pred cccCCCeeeCC
Q psy15692 81 CCKCGERILGE 91 (278)
Q Consensus 81 C~~C~~~I~~~ 91 (278)
|..|+.+|.++
T Consensus 2 Cp~CG~~~~~~ 12 (23)
T PF13240_consen 2 CPNCGAEIEDD 12 (23)
T ss_pred CcccCCCCCCc
Confidence 56666666543
No 36
>KOG4739|consensus
Probab=62.53 E-value=6.2 Score=33.98 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCcccc
Q psy15692 167 CVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIM 209 (278)
Q Consensus 167 C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~ 209 (278)
|..|...-+...|++..=..++|..|...-.++.|..|+++|.
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR 48 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence 5556655556777776677899999988777789999999975
No 37
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.04 E-value=3.3 Score=33.20 Aligned_cols=48 Identities=25% Similarity=0.579 Sum_probs=30.4
Q ss_pred eecccccccccccccccccccccccc----eEEcCCcCCcCeecCCCCCCCCC
Q psy15692 127 HAYCEQGYLDTLEKCSVCVKPILDRI----LRATGRPYHPACFTCVVCGKSLD 175 (278)
Q Consensus 127 ~~yC~~~y~~~~~~C~~C~~~I~~~~----~~~~~~~~H~~Cf~C~~C~~~l~ 175 (278)
.-||..|-.+....|..|+.+|.|.+ +...+..|+.-- -|..|++++.
T Consensus 28 ~~fC~kCG~~tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~Ps-YC~~CGkpyP 79 (158)
T PF10083_consen 28 EKFCSKCGAKTITSCPNCSTPIRGDYHVEGVFGLGGHYEAPS-YCHNCGKPYP 79 (158)
T ss_pred HHHHHHhhHHHHHHCcCCCCCCCCceecCCeeeeCCCCCCCh-hHHhCCCCCc
Confidence 56888888877788888888887542 223344455321 2666666654
No 38
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=60.62 E-value=5 Score=26.72 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=8.9
Q ss_pred cccccCCCeeeCCc
Q psy15692 79 GECCKCGERILGEG 92 (278)
Q Consensus 79 ~~C~~C~~~I~~~~ 92 (278)
..|..|+..|.+.+
T Consensus 8 ~~CtSCg~~i~~~~ 21 (59)
T PRK14890 8 PKCTSCGIEIAPRE 21 (59)
T ss_pred ccccCCCCcccCCC
Confidence 45777777776544
No 39
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=59.92 E-value=1.8 Score=30.70 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=18.7
Q ss_pred CCCcccCccccCCCCCCceeEEEcCC-----cccccCCcc
Q psy15692 199 PRCCVCRAPIMPDSEQDETVRVVALD-----RSFHIGCYR 233 (278)
Q Consensus 199 ~~C~~C~~~I~~~~~~~~~~~v~~~~-----~~~H~~Cf~ 233 (278)
.+|.+|++.|..++-..+.......+ ..||..||.
T Consensus 8 a~Ck~C~~~I~kg~lRiG~~~~~~~~~~~~~~W~H~~C~~ 47 (82)
T PF00645_consen 8 AKCKGCKKKIAKGELRIGKIVPSPEGDGDIPKWYHWDCFF 47 (82)
T ss_dssp EBETTTSCBE-TTSEEEEEEEEETTSSCEEEEEEEHHHHH
T ss_pred ccCcccCCcCCCCCEEEEEEecccccCCCCCceECccccc
Confidence 46889999997654211111111222 356888887
No 40
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=58.32 E-value=5.2 Score=26.38 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=27.6
Q ss_pred ccccccCcccCCCCeEeeCCeecccccccccc---ccccccccccc
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL---EKCSVCVKPIL 149 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~---~~C~~C~~~I~ 149 (278)
|.|..|+..+.. +.....|..||+.+..+.. ..|..|++++.
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC-CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 567778777765 4556678888887765432 45666666663
No 41
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=58.31 E-value=8.5 Score=20.96 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=6.9
Q ss_pred CCCcccCccccC
Q psy15692 199 PRCCVCRAPIMP 210 (278)
Q Consensus 199 ~~C~~C~~~I~~ 210 (278)
..|..|+..|.+
T Consensus 3 ~~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 3 MFCPNCGAEIDP 14 (26)
T ss_pred CCCcccCCcCCc
Confidence 346666665543
No 42
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=58.26 E-value=3.2 Score=30.86 Aligned_cols=27 Identities=37% Similarity=0.845 Sum_probs=14.6
Q ss_pred cccccccccc-ccceEE-cCCcCCcCeec
Q psy15692 140 KCSVCVKPIL-DRILRA-TGRPYHPACFT 166 (278)
Q Consensus 140 ~C~~C~~~I~-~~~~~~-~~~~~H~~Cf~ 166 (278)
+|..|+++|. |+.+++ .+..-|-.||+
T Consensus 4 kC~iCg~~I~~gqlFTF~~kG~VH~~C~~ 32 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKKGPVHYECFR 32 (101)
T ss_pred EEEecCCeeeecceEEEecCCcEeHHHHH
Confidence 4666666664 444433 33455666655
No 43
>KOG0320|consensus
Probab=57.03 E-value=2.6 Score=34.64 Aligned_cols=47 Identities=32% Similarity=0.646 Sum_probs=36.8
Q ss_pred cccccccccCcccCCC-CeEeeCCeecccccccccc---cccccccccccc
Q psy15692 104 ISCFTCDHCAVQLEGK-PFYIIEGHAYCEQGYLDTL---EKCSVCVKPILD 150 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~-~f~~~~g~~yC~~~y~~~~---~~C~~C~~~I~~ 150 (278)
..+|+|-.|-.....+ .+-.+=|++||..|..... .+|..|++.|..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 4678888887777655 3667789999999987655 689999998864
No 44
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=56.13 E-value=5.4 Score=28.51 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=18.3
Q ss_pred ccCCCCCCCCCCc-CCCceeecCCccccccchh
Q psy15692 233 RCEDCGLVLSSEA-EGRGCYPLDDHVLCKSCNA 264 (278)
Q Consensus 233 ~C~~C~~~l~~~~-~g~~~~~~~~~~~C~~C~~ 264 (278)
.|..||.||..+. .|..-=-..+.-||..||.
T Consensus 2 ~CQSCGMPl~~~~~~Gte~dGs~s~~YC~yCy~ 34 (81)
T PF12674_consen 2 FCQSCGMPLSKDEDFGTEADGSKSEDYCSYCYQ 34 (81)
T ss_pred cCCcCcCccCCccccccccCCCCchhHHHHHhc
Confidence 4788888887643 1111011123578888885
No 45
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=55.54 E-value=8.2 Score=23.76 Aligned_cols=22 Identities=41% Similarity=0.928 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCCcCCCceeecCCccccccc
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDHVLCKSC 262 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C 262 (278)
.|..|+.+|- -..+++++|..|
T Consensus 19 ~Cp~C~~PL~--------~~k~g~~~Cv~C 40 (41)
T PF06677_consen 19 HCPDCGTPLM--------RDKDGKIYCVSC 40 (41)
T ss_pred ccCCCCCeeE--------EecCCCEECCCC
Confidence 4666777763 135677888776
No 46
>KOG1813|consensus
Probab=55.38 E-value=5.9 Score=35.16 Aligned_cols=44 Identities=30% Similarity=0.501 Sum_probs=29.9
Q ss_pred cccccccCcccCCCCeEeeCCeecccccccccc---cccccccccccc
Q psy15692 106 CFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL---EKCSVCVKPILD 150 (278)
Q Consensus 106 Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~---~~C~~C~~~I~~ 150 (278)
=|.|.+|+..+... -...=+..+|+.|....+ ++|..|++.+.+
T Consensus 241 Pf~c~icr~~f~~p-Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP-VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccc-hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 46677777665432 334456778888887665 678888888765
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=54.80 E-value=11 Score=25.69 Aligned_cols=48 Identities=21% Similarity=0.413 Sum_probs=17.4
Q ss_pred ccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccccceE
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILDRILR 154 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~ 154 (278)
++|+.|..-|...-....=+++||..|....+ ..|..|+.+-..+-++
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHH
Confidence 45666665554321122234677777776554 5688888877544343
No 48
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=52.86 E-value=15 Score=36.75 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=14.9
Q ss_pred CcccchhhhhcccCCCCcccCccccCC
Q psy15692 185 NQIHCIQDFHKKFAPRCCVCRAPIMPD 211 (278)
Q Consensus 185 ~~~~C~~~y~~~~~~~C~~C~~~I~~~ 211 (278)
+..||..|-..+-...|..|+..+..+
T Consensus 14 ~akFC~~CG~~l~~~~Cp~CG~~~~~~ 40 (645)
T PRK14559 14 NNRFCQKCGTSLTHKPCPQCGTEVPVD 40 (645)
T ss_pred CCccccccCCCCCCCcCCCCCCCCCcc
Confidence 334566664444345677777766543
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=52.69 E-value=2.8 Score=34.96 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=31.3
Q ss_pred ccccccccCcccCCCCeEeeCCeecccccccccc---ccccccccccccc
Q psy15692 105 SCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL---EKCSVCVKPILDR 151 (278)
Q Consensus 105 ~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~---~~C~~C~~~I~~~ 151 (278)
-=|.|..|++...+. ....=|+.||..|+...+ +.|..|++...+.
T Consensus 195 IPF~C~iCKkdy~sp-vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 195 IPFLCGICKKDYESP-VVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred Cceeehhchhhccch-hhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 357778887766442 344457788888887665 6788888877654
No 50
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=52.00 E-value=6.8 Score=32.90 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccccccCcccCCCCeEeeCCeecccccccc
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLD 136 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~ 136 (278)
-+|..|+..+....-...+|++.|..||.+
T Consensus 173 v~C~kCGE~~~e~~~~~~ng~~vC~~C~~~ 202 (206)
T COG2191 173 VRCSKCGELFMEPRAVVLNGKPVCKPCAEK 202 (206)
T ss_pred eeccccCcccccchhhhcCCceeccccccc
Confidence 566777776665555567888888888864
No 51
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=51.71 E-value=9.1 Score=38.19 Aligned_cols=84 Identities=25% Similarity=0.518 Sum_probs=62.3
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeeccccccc-ccccccccccccccccceE
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYL-DTLEKCSVCVKPILDRILR 154 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~ 154 (278)
....+|..|-++|.+.. ++.||--=-.|+.|| -.|-+.+..||=+.... ..|+.|..|.+.-. .
T Consensus 99 pD~a~C~~Cl~Ei~dp~------~rrY~YPF~~CT~CG-----PRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~----d 163 (750)
T COG0068 99 PDAATCEDCLEEIFDPN------SRRYLYPFINCTNCG-----PRFTIIEALPYDRENTSMADFPLCPFCDKEYK----D 163 (750)
T ss_pred CchhhhHHHHHHhcCCC------CcceeccccccCCCC-----cceeeeccCCCCcccCccccCcCCHHHHHHhc----C
Confidence 45678999988886543 678886667889996 35667777777554433 33589999988443 3
Q ss_pred EcCCcCCcCeecCCCCCCCC
Q psy15692 155 ATGRPYHPACFTCVVCGKSL 174 (278)
Q Consensus 155 ~~~~~~H~~Cf~C~~C~~~l 174 (278)
..++.||.+=..|-.|+..+
T Consensus 164 P~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 164 PLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred ccccccccccccCcccCCCe
Confidence 57999999999999999875
No 52
>KOG4443|consensus
Probab=49.03 E-value=13 Score=36.69 Aligned_cols=83 Identities=25% Similarity=0.574 Sum_probs=46.6
Q ss_pred cCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCC
Q psy15692 162 PACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVL 241 (278)
Q Consensus 162 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l 241 (278)
+.|-+|..|++. + +...-++|..|-.. |. .-|.+|-..+ +..+..+.++|++|..|+..|
T Consensus 66 ~~crvCe~c~~~--g-----D~~kf~~Ck~cDvs-yh---~yc~~P~~~~---------v~sg~~~ckk~~~c~qc~~~l 125 (694)
T KOG4443|consen 66 PSCRVCEACGTT--G-----DPKKFLLCKRCDVS-YH---CYCQKPPNDK---------VPSGPWLCKKCTRCRQCDSTL 125 (694)
T ss_pred CCceeeeecccc--C-----Cccccccccccccc-cc---ccccCCcccc---------ccCcccccHHHHhhhhccccc
Confidence 667788888732 1 12233456655211 11 1256665432 245677889999999999988
Q ss_pred CCCcC-----CCceeecCCccccccchh
Q psy15692 242 SSEAE-----GRGCYPLDDHVLCKSCNA 264 (278)
Q Consensus 242 ~~~~~-----g~~~~~~~~~~~C~~C~~ 264 (278)
.+... +..+|.-....||..|+.
T Consensus 126 pg~s~~~~~~~~~~~~c~s~~~cPvc~~ 153 (694)
T KOG4443|consen 126 PGLSLDLQEGYLQCAPCASLSYCPVCLI 153 (694)
T ss_pred cccchhhhccCcccccccccccCchHHH
Confidence 75100 112334444577777764
No 53
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=48.21 E-value=11 Score=25.14 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=9.0
Q ss_pred ccccccCCCeeeCCc
Q psy15692 78 FGECCKCGERILGEG 92 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~ 92 (278)
...|..|+..|...+
T Consensus 9 ~~~CtSCg~~i~p~e 23 (61)
T COG2888 9 PPVCTSCGREIAPGE 23 (61)
T ss_pred CceeccCCCEeccCC
Confidence 346777777774443
No 54
>KOG0320|consensus
Probab=47.99 E-value=12 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.410 Sum_probs=33.6
Q ss_pred cCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcc--cCCCCcccCccccCC
Q psy15692 162 PACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK--FAPRCCVCRAPIMPD 211 (278)
Q Consensus 162 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~--~~~~C~~C~~~I~~~ 211 (278)
..+|.|-.|=.......-.-.+=|.+||..|.... .+.+|..|++.|...
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34567777755554333111256899999998653 477999999998754
No 55
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=47.88 E-value=17 Score=22.89 Aligned_cols=42 Identities=19% Similarity=0.502 Sum_probs=27.7
Q ss_pred cCCCCCCCCCCCCeEEcCCCcc-cchhhhhcc--cCCCCcccCcccc
Q psy15692 166 TCVVCGKSLDGIPFTVDAANQI-HCIQDFHKK--FAPRCCVCRAPIM 209 (278)
Q Consensus 166 ~C~~C~~~l~~~~~~~~~~~~~-~C~~~y~~~--~~~~C~~C~~~I~ 209 (278)
.|..|...... ..+..=|.. +|..|+.+. ...+|..|.++|.
T Consensus 4 ~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 4 ECPICFENPRD--VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp B-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCccCCccCCc--eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46666665443 222355777 999998776 4678999999985
No 56
>KOG3816|consensus
Probab=47.65 E-value=2.1 Score=39.34 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=66.0
Q ss_pred cccccccccc--cccceEEcCCcCC--cCeec-CCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCC
Q psy15692 139 EKCSVCVKPI--LDRILRATGRPYH--PACFT-CVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSE 213 (278)
Q Consensus 139 ~~C~~C~~~I--~~~~~~~~~~~~H--~~Cf~-C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~ 213 (278)
..|..|+.++ ++++-.+.|..|= ..+|- |. ..+|.+..|++ +-.|..|.+-....+|..|+++..+..-
T Consensus 381 V~CvlC~~~L~VfdkyPLVDG~fflSP~~h~~~~~--eV~l~GR~~yL----~~vC~~CL~g~~sI~C~~Ck~~wDGss~ 454 (526)
T KOG3816|consen 381 VPCVLCKDELKVFDKYPLVDGVFFLSPVSHFGPKT--EVSLDGRRFYL----QQVCARCLWGDWSIICKNCKKDWDGSSF 454 (526)
T ss_pred cchhhhccchhhhcccccccceEEeccccccCcce--eeeecceehhH----HHHHHHHhcccchHHHhhcCCCCCCcce
Confidence 3588888766 4666655555431 11111 11 11234444433 3458888877666789999999876531
Q ss_pred CCceeE---EEcCCcccccCCcccCCCCCCCCCCcCCCceeec-CCccccccchh
Q psy15692 214 QDETVR---VVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPL-DDHVLCKSCNA 264 (278)
Q Consensus 214 ~~~~~~---v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~-~~~~~C~~C~~ 264 (278)
..+|++ |++ ...-.+.=|+|..|.++|...+.+..||.. .....|..|..
T Consensus 455 vLGTmY~YDI~a-a~pCC~~R~~C~~C~k~l~~~~q~~t~~s~ys~~~~cP~c~~ 508 (526)
T KOG3816|consen 455 VLGTMYYYDIVA-AGPCCPVRLVCQSCRKSLGVRDQLATQLSNYSALRICPSCKL 508 (526)
T ss_pred eechhhhhhhhh-cCCcchhhhhhhhhccccccHHHHHHHHhhhhcccccCCcCc
Confidence 111111 111 112244557899999999865444444433 44667777764
No 57
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=45.07 E-value=20 Score=21.08 Aligned_cols=24 Identities=25% Similarity=0.658 Sum_probs=12.6
Q ss_pred CCcccchhhhhccc---CCCCcccCcc
Q psy15692 184 ANQIHCIQDFHKKF---APRCCVCRAP 207 (278)
Q Consensus 184 ~~~~~C~~~y~~~~---~~~C~~C~~~ 207 (278)
=|..||..|....+ ..+|..|+..
T Consensus 18 C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 18 CGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 35566666654332 3356666544
No 58
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=44.28 E-value=13 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.632 Sum_probs=13.1
Q ss_pred ccccCcccCCCCeEeeCCeecccc
Q psy15692 109 CDHCAVQLEGKPFYIIEGHAYCEQ 132 (278)
Q Consensus 109 C~~C~~~l~~~~f~~~~g~~yC~~ 132 (278)
|..|...++...-+.+||+.||.+
T Consensus 10 C~~C~C~V~~~~Ai~~dGk~YCS~ 33 (52)
T PF02069_consen 10 CPSCSCVVSEEEAIQKDGKYYCSE 33 (52)
T ss_dssp STT----B-TTTSEESSS-EESSH
T ss_pred CCCCEeEECchHhHHhCCEeeecH
Confidence 566777777556688889999854
No 59
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=44.16 E-value=11 Score=24.27 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=20.0
Q ss_pred ccCCCCCCCCCCcCCCceeecCCccccccchhHh
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~ 266 (278)
.|..|+..++-- + .+-..|| .+|..|+.+.
T Consensus 1 ~C~iCg~kigl~--~-~~k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLF--K-RFKIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccc--c-ceeccCc-cchHHHHHHh
Confidence 478888888631 1 1223455 7999999887
No 60
>PRK00420 hypothetical protein; Validated
Probab=43.45 E-value=16 Score=27.84 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=16.3
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchh
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNA 264 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~ 264 (278)
-.|..|+.+|- -..+|+.+|..|..
T Consensus 24 ~~CP~Cg~pLf--------~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 24 KHCPVCGLPLF--------ELKDGEVVCPVHGK 48 (112)
T ss_pred CCCCCCCCcce--------ecCCCceECCCCCC
Confidence 35777777763 23577778887764
No 61
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=42.98 E-value=16 Score=28.58 Aligned_cols=21 Identities=24% Similarity=0.733 Sum_probs=15.2
Q ss_pred ccccCcccCCCCeEeeCCeecccccc
Q psy15692 109 CDHCAVQLEGKPFYIIEGHAYCEQGY 134 (278)
Q Consensus 109 C~~C~~~l~~~~f~~~~g~~yC~~~y 134 (278)
|..|+.|| |.++|.+||.-|-
T Consensus 31 Cp~Cg~PL-----F~KdG~v~CPvC~ 51 (131)
T COG1645 31 CPKCGTPL-----FRKDGEVFCPVCG 51 (131)
T ss_pred CcccCCcc-----eeeCCeEECCCCC
Confidence 57777766 4478888887765
No 62
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.88 E-value=16 Score=36.49 Aligned_cols=83 Identities=24% Similarity=0.462 Sum_probs=53.5
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCcee
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETV 218 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~ 218 (278)
..|..|.+.|.+. .++.||--=-.|+.|+..++ . -...||=+..-...--+.|..|.+-
T Consensus 102 a~C~~Cl~Ei~dp----~~rrY~YPF~~CT~CGPRfT-----I-i~alPYDR~nTsM~~F~lC~~C~~E----------- 160 (750)
T COG0068 102 ATCEDCLEEIFDP----NSRRYLYPFINCTNCGPRFT-----I-IEALPYDRENTSMADFPLCPFCDKE----------- 160 (750)
T ss_pred hhhHHHHHHhcCC----CCcceeccccccCCCCccee-----e-eccCCCCcccCccccCcCCHHHHHH-----------
Confidence 4788888888764 46778777778999998764 1 1122221111111112456667652
Q ss_pred EEEcCCcccccCCcccCCCCCCCC
Q psy15692 219 RVVALDRSFHIGCYRCEDCGLVLS 242 (278)
Q Consensus 219 ~v~~~~~~~H~~Cf~C~~C~~~l~ 242 (278)
+-...++.||..=..|..|+=.+.
T Consensus 161 Y~dP~nRRfHAQp~aCp~CGP~~~ 184 (750)
T COG0068 161 YKDPLNRRFHAQPIACPKCGPHLF 184 (750)
T ss_pred hcCccccccccccccCcccCCCeE
Confidence 223678999999999999997764
No 63
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=42.45 E-value=13 Score=27.05 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=14.8
Q ss_pred hhhcccCCCCcccCccc
Q psy15692 192 DFHKKFAPRCCVCRAPI 208 (278)
Q Consensus 192 ~y~~~~~~~C~~C~~~I 208 (278)
-|..+|..+|..|++-+
T Consensus 48 sY~~lfs~pC~~C~klL 64 (90)
T PF11571_consen 48 SYRNLFSTPCKKCGKLL 64 (90)
T ss_pred HHhhhccchhhHHHhHh
Confidence 36788899999999998
No 64
>KOG0823|consensus
Probab=42.07 E-value=17 Score=31.20 Aligned_cols=53 Identities=25% Similarity=0.573 Sum_probs=37.8
Q ss_pred cccccccccCcccCCCCeEeeCCeecccccccccc------cccccccccccc-cceEEcC
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL------EKCSVCVKPILD-RILRATG 157 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~------~~C~~C~~~I~~-~~~~~~~ 157 (278)
-..|-|.+| ..++..+-...=|++||..|.++-. .-|.+|+-.|.. .+|-.-|
T Consensus 45 ~~~FdCNIC-Ld~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNIC-LDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeee-ccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 357788888 3344556777889999999987643 458999999974 5554433
No 65
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=41.80 E-value=18 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=16.5
Q ss_pred CCCcccCccccCCCCCCceeEEEcCCccccc
Q psy15692 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHI 229 (278)
Q Consensus 199 ~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~ 229 (278)
.+|..|++||.+.. .+...+..-|+
T Consensus 2 ~~CvVCKqpi~~a~------~v~T~~G~VH~ 26 (54)
T PF10886_consen 2 EICVVCKQPIDDAL------VVETESGPVHP 26 (54)
T ss_pred CeeeeeCCccCcce------EEEcCCCccCc
Confidence 46889999997652 44455556665
No 66
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=40.80 E-value=14 Score=21.81 Aligned_cols=31 Identities=29% Similarity=0.792 Sum_probs=18.2
Q ss_pred cccccccccccceEEcCCcCCcCeecCCCCCCCCC
Q psy15692 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLD 175 (278)
Q Consensus 141 C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 175 (278)
|..|.+.+.+ ..++.||-.=..|..|+..+.
T Consensus 2 C~~C~~Ey~~----p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 2 CDDCLKEYFD----PSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp -HHHHHHHCS----TTSTTTT-TT--BTTCC-SCC
T ss_pred CHHHHHHHcC----CCCCcccCcCccCCCCCCCEE
Confidence 5555555543 247899999899999998764
No 67
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=39.69 E-value=11 Score=31.50 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=33.3
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhccc--CCCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF--APRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~--~~~C~~C~~~I~~~ 211 (278)
|.|..|++-..+--. ..=|.-+|..|+.+.+ ++.|..|++...+.
T Consensus 197 F~C~iCKkdy~spvv--t~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 197 FLCGICKKDYESPVV--TECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred eeehhchhhccchhh--hhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 788889886653222 2347889999998776 67899999887654
No 68
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=39.38 E-value=11 Score=26.05 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=8.7
Q ss_pred Ceeccccccccc--cccccccccccc
Q psy15692 126 GHAYCEQGYLDT--LEKCSVCVKPIL 149 (278)
Q Consensus 126 g~~yC~~~y~~~--~~~C~~C~~~I~ 149 (278)
+..+|..|-..- ...|..|++++.
T Consensus 16 ~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 16 GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CEEECccccccceecccCCCcccHHH
Confidence 444454443321 145555555553
No 69
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=38.65 E-value=37 Score=29.75 Aligned_cols=99 Identities=20% Similarity=0.383 Sum_probs=54.9
Q ss_pred cccccccccCcccCCCCeEeeCCeeccccccccc---cccccccccccc-c-cc-eEEcCCcCCcCeecCCCCCCCCCCC
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDT---LEKCSVCVKPIL-D-RI-LRATGRPYHPACFTCVVCGKSLDGI 177 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~---~~~C~~C~~~I~-~-~~-~~~~~~~~H~~Cf~C~~C~~~l~~~ 177 (278)
+.|+.=..|..||....... |++-.+.. .-+|..|...+- + ++ -+|.-++.-.+-|+|..|++.= .
T Consensus 111 rkCl~~HaC~Cpl~da~C~E------C~R~vw~hGGrif~CsfC~~flCEDDQFEHQAsCQvLe~E~~KC~SCNrlG--q 182 (314)
T PF06524_consen 111 RKCLSTHACTCPLQDAVCIE------CERGVWDHGGRIFKCSFCDNFLCEDDQFEHQASCQVLESETFKCQSCNRLG--Q 182 (314)
T ss_pred ccccccccccCcCCCcEeee------eecccccCCCeEEEeecCCCeeeccchhhhhhhhhhhhccccccccccccc--c
Confidence 56777678888887653332 33322221 247888888874 2 21 1344445556678888887731 1
Q ss_pred CeEEcCCCcccchhhhh-------cccCCCCcccCccccCC
Q psy15692 178 PFTVDAANQIHCIQDFH-------KKFAPRCCVCRAPIMPD 211 (278)
Q Consensus 178 ~~~~~~~~~~~C~~~y~-------~~~~~~C~~C~~~I~~~ 211 (278)
.-.+ +=..-||..|.. +.-++.|..|+......
T Consensus 183 ~sCL-RCK~cfCddHvrrKg~ky~k~k~~PCPKCg~et~eT 222 (314)
T PF06524_consen 183 YSCL-RCKICFCDDHVRRKGFKYEKGKPIPCPKCGYETQET 222 (314)
T ss_pred hhhh-heeeeehhhhhhhcccccccCCCCCCCCCCCccccc
Confidence 1111 223345555533 22356799998887643
No 70
>KOG2462|consensus
Probab=38.06 E-value=9.6 Score=33.55 Aligned_cols=92 Identities=22% Similarity=0.406 Sum_probs=46.2
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccc-----cccccccccCcccCCCCeEeeCCeecccccccccccccccccccccc
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYH-----ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILD 150 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H-----~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~~ 150 (278)
...-.|..|+|...... . ..--+.+| +.=|.|..|++.-....-.. ..+ ..+ .+--.|..|+|.+.-
T Consensus 128 ~~r~~c~eCgk~ysT~s-n-LsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALk--MHi--rTH--~l~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSS-N-LSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALK--MHI--RTH--TLPCECGICGKAFSR 199 (279)
T ss_pred CCceecccccccccccc-c-cchhhcccccccccccccCCCCCceeeehHHHh--hHh--hcc--CCCcccccccccccc
Confidence 34557888988654222 1 12244555 56688888976442211000 000 001 111468888887752
Q ss_pred -cceEEcCCcCC--cCeecCCCCCCCCCC
Q psy15692 151 -RILRATGRPYH--PACFTCVVCGKSLDG 176 (278)
Q Consensus 151 -~~~~~~~~~~H--~~Cf~C~~C~~~l~~ 176 (278)
..++. --..| +.=|.|..|++.|.+
T Consensus 200 PWLLQG-HiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 200 PWLLQG-HIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred hHHhhc-ccccccCCCCccCCcccchhcc
Confidence 22221 11122 234888889887754
No 71
>KOG1813|consensus
Probab=37.59 E-value=20 Score=31.93 Aligned_cols=45 Identities=20% Similarity=0.453 Sum_probs=32.3
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhccc--CCCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF--APRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~--~~~C~~C~~~I~~~ 211 (278)
|.|..|++.+...-- ..-+.-+|..|..+.| +++|..|++.+.+.
T Consensus 242 f~c~icr~~f~~pVv--t~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVV--TKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccchh--hcCCceeehhhhccccccCCcceecccccccc
Confidence 678888887653222 2346678999987766 46999999999864
No 72
>KOG3002|consensus
Probab=37.21 E-value=18 Score=32.49 Aligned_cols=43 Identities=28% Similarity=0.492 Sum_probs=34.0
Q ss_pred ccccccCcccCCCCeEeeCCeeccccccccccccccccccccc
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPIL 149 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~ 149 (278)
+-|-.|...|..-.|.-.+|.+.|..|-.+...+|..|..+|.
T Consensus 49 leCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccc
Confidence 4456667777766777788889999888877788988998885
No 73
>PRK00807 50S ribosomal protein L24e; Validated
Probab=36.52 E-value=30 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=16.8
Q ss_pred cccccCCCeee-CCcce-eeeCCccccc
Q psy15692 79 GECCKCGERIL-GEGSG-CTAMDKVYHI 104 (278)
Q Consensus 79 ~~C~~C~~~I~-~~~~~-~~~~~~~~H~ 104 (278)
..|..|+..|. +.... +..+|+.|.-
T Consensus 2 ~~C~fcG~~I~pg~G~~~vr~Dgkv~~F 29 (52)
T PRK00807 2 RTCSFCGKEIEPGTGKMYVKKDGTILYF 29 (52)
T ss_pred cccCCCCCeEcCCCCeEEEEeCCcEEEE
Confidence 35889999998 33332 4466777763
No 74
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=36.29 E-value=21 Score=36.17 Aligned_cols=84 Identities=29% Similarity=0.608 Sum_probs=59.6
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccc-cccccccccccccccccceE
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY-LDTLEKCSVCVKPILDRILR 154 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y-~~~~~~C~~C~~~I~~~~~~ 154 (278)
....+|..|-++|.+. .++.||--=..|+.||- .|.+....+|=.... ...|+.|..|.+...+.
T Consensus 66 pD~a~C~~Cl~E~~dp------~~Rry~YpF~nCt~CGP-----r~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p--- 131 (711)
T TIGR00143 66 ADVATCSDCLEEMLDK------NDRRYLYPFISCTHCGP-----RFTIIEALPYDRENTSMADFPLCPDCAKEYKDP--- 131 (711)
T ss_pred CchhhHHHHHHHhcCC------CcccccCCcccccCCCC-----CeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCC---
Confidence 3466899998888643 25677765567888864 455555556543321 12347899999887654
Q ss_pred EcCCcCCcCeecCCCCCCCC
Q psy15692 155 ATGRPYHPACFTCVVCGKSL 174 (278)
Q Consensus 155 ~~~~~~H~~Cf~C~~C~~~l 174 (278)
.++.||-.=-.|..|+..|
T Consensus 132 -~~rr~h~~~~~C~~Cgp~l 150 (711)
T TIGR00143 132 -LDRRFHAQPIACPRCGPQL 150 (711)
T ss_pred -ccccCCCCCccCCCCCcEE
Confidence 6889999999999999987
No 75
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=36.10 E-value=25 Score=22.26 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=9.2
Q ss_pred ccccccCCCeeeC
Q psy15692 78 FGECCKCGERILG 90 (278)
Q Consensus 78 ~~~C~~C~~~I~~ 90 (278)
...|..|++.|.+
T Consensus 11 ~~~C~~C~~~i~g 23 (53)
T PF00130_consen 11 PTYCDVCGKFIWG 23 (53)
T ss_dssp TEB-TTSSSBECS
T ss_pred CCCCcccCcccCC
Confidence 4579999999944
No 76
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=35.46 E-value=27 Score=25.23 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=14.3
Q ss_pred cCCCCCCCCC-CCCeEEcCCC--cccc
Q psy15692 166 TCVVCGKSLD-GIPFTVDAAN--QIHC 189 (278)
Q Consensus 166 ~C~~C~~~l~-~~~~~~~~~~--~~~C 189 (278)
.|..|+.++. +..+..+.+| +.+|
T Consensus 2 ~C~HCg~~~p~~~~~~~~~~g~~~~FC 28 (88)
T PF12156_consen 2 KCYHCGLPVPEGAKITVEIDGEERPFC 28 (88)
T ss_pred CCCCCCCCCCCCCCeeeeeCCCccccc
Confidence 4777777775 4445444444 5666
No 77
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.67 E-value=51 Score=21.74 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=28.4
Q ss_pred CCCCCCCCCCC---CeEEcCCCcccchhhhhcccCCCCcccCccccC
Q psy15692 167 CVVCGKSLDGI---PFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMP 210 (278)
Q Consensus 167 C~~C~~~l~~~---~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~ 210 (278)
|..|++.|... .+.- .-.--||..|....+...|..|+..+..
T Consensus 8 CE~C~~dLp~~s~~A~IC-SfECTFC~~C~e~~l~~~CPNCgGelv~ 53 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYIC-SFECTFCADCAETMLNGVCPNCGGELVR 53 (57)
T ss_pred ccccCCCCCCCCCcceEE-eEeCcccHHHHHHHhcCcCcCCCCcccc
Confidence 56666666522 2221 1234688899888888999999887653
No 78
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.67 E-value=28 Score=24.58 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=4.8
Q ss_pred cCCCCcccCcccc
Q psy15692 197 FAPRCCVCRAPIM 209 (278)
Q Consensus 197 ~~~~C~~C~~~I~ 209 (278)
.+..|..|+..|.
T Consensus 8 ~~qiCqiCGD~VG 20 (80)
T PF14569_consen 8 NGQICQICGDDVG 20 (80)
T ss_dssp SS-B-SSS--B--
T ss_pred CCcccccccCccc
Confidence 4567777777764
No 79
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=33.48 E-value=12 Score=23.26 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=5.1
Q ss_pred cccCCCCCCC
Q psy15692 232 YRCEDCGLVL 241 (278)
Q Consensus 232 f~C~~C~~~l 241 (278)
++|..|+..+
T Consensus 22 ~~Cp~CG~~~ 31 (46)
T PRK00398 22 VRCPYCGYRI 31 (46)
T ss_pred eECCCCCCeE
Confidence 4555555444
No 80
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=32.39 E-value=19 Score=30.27 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.4
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhcc
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK 196 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~ 196 (278)
-+|..|+..+....-. ..+|+++|..||.+.
T Consensus 173 v~C~kCGE~~~e~~~~-~~ng~~vC~~C~~~~ 203 (206)
T COG2191 173 VRCSKCGELFMEPRAV-VLNGKPVCKPCAEKK 203 (206)
T ss_pred eeccccCcccccchhh-hcCCceecccccccc
Confidence 6899999887654433 368999999998754
No 81
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.91 E-value=22 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=24.9
Q ss_pred cccccCCCeeeCCcceeeeCCcccccccccccccCcc
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQ 115 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 115 (278)
-.|..|+++|..+..........-|-+||.-..-+++
T Consensus 7 wkC~VCg~~iieGqkFTF~~kGsVH~eCl~~s~~~k~ 43 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTKKGSVHYECLAESKRKKP 43 (103)
T ss_pred eeEeeeCCEeeeccEEEEeeCCcchHHHHHHHHhcCc
Confidence 4699999998865542233355788899876654443
No 82
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=30.85 E-value=30 Score=21.84 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=17.7
Q ss_pred cCCCCCCCCCCcCCCceeecCCccccccchhHhhhh
Q psy15692 234 CEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 234 C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~ 269 (278)
|-.|+++... .+...++.+|..|-.+.+..
T Consensus 2 CiiC~~~~~~------GI~I~~~fIC~~CE~~iv~~ 31 (46)
T PF10764_consen 2 CIICGKEKEE------GIHIYGKFICSDCEKEIVNT 31 (46)
T ss_pred eEeCCCcCCC------CEEEECeEehHHHHHHhccC
Confidence 5556655542 24556677777777666544
No 83
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=29.93 E-value=25 Score=19.62 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=1.9
Q ss_pred cccccCcccC
Q psy15692 108 TCDHCAVQLE 117 (278)
Q Consensus 108 ~C~~C~~~l~ 117 (278)
+|..|+.++.
T Consensus 2 ~C~~C~~~~~ 11 (30)
T PF07649_consen 2 RCDACGKPID 11 (30)
T ss_dssp --TTTS----
T ss_pred cCCcCCCcCC
Confidence 3444444443
No 84
>KOG4443|consensus
Probab=29.06 E-value=24 Score=34.86 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=16.7
Q ss_pred cCCcCCcCeecCCCCCCCCCC
Q psy15692 156 TGRPYHPACFTCVVCGKSLDG 176 (278)
Q Consensus 156 ~~~~~H~~Cf~C~~C~~~l~~ 176 (278)
.+..+-++|++|..|+..+.+
T Consensus 107 sg~~~ckk~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 107 SGPWLCKKCTRCRQCDSTLPG 127 (694)
T ss_pred CcccccHHHHhhhhccccccc
Confidence 356677888999999888876
No 85
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=28.69 E-value=48 Score=20.38 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=13.7
Q ss_pred cCCCCCCCCCCCCeEEc-CCCcccchhhhhc
Q psy15692 166 TCVVCGKSLDGIPFTVD-AANQIHCIQDFHK 195 (278)
Q Consensus 166 ~C~~C~~~l~~~~~~~~-~~~~~~C~~~y~~ 195 (278)
.|..|++++.+..|.-. =.+.-+|..||.+
T Consensus 6 ~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 6 SCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 35555554444333110 1123467777754
No 86
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=28.43 E-value=15 Score=27.07 Aligned_cols=42 Identities=19% Similarity=0.564 Sum_probs=28.6
Q ss_pred ccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhcccCCccC
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALTSTMVTE 277 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~ 277 (278)
.|+.|+++.=- |..+-+.-.+-+|..|..+..++....+..|
T Consensus 51 ~CS~C~~~VC~---~~~CSlFYtkrFC~pC~~~~~~~FP~eiq~~ 92 (97)
T PF10170_consen 51 PCSICGKPVCV---GQDCSLFYTKRFCLPCVKRNLKAFPPEIQKD 92 (97)
T ss_pred cccccCCceEc---CCCccEEeeCceeHHHHHHHHHHCCHHHHHH
Confidence 57777777653 3346666678899999988877765544443
No 87
>KOG1734|consensus
Probab=28.27 E-value=24 Score=31.09 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=33.1
Q ss_pred CCCcccCccccCCCCCC---ceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHh
Q psy15692 199 PRCCVCRAPIMPDSEQD---ETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266 (278)
Q Consensus 199 ~~C~~C~~~I~~~~~~~---~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~ 266 (278)
..|+.|++.|.....++ |..+-..-++.||+.|-+ +.-....+..|+-|-++.
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIr---------------GWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIR---------------GWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhh---------------hheeecCCCCCchHHHHh
Confidence 46888888886543222 222344668889988876 233455567777777654
No 88
>KOG0978|consensus
Probab=27.27 E-value=17 Score=36.37 Aligned_cols=46 Identities=15% Similarity=0.514 Sum_probs=30.5
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhcccC---CCCcccCccccCCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA---PRCCVCRAPIMPDS 212 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~---~~C~~C~~~I~~~~ 212 (278)
++|..|+....+.-. ..=+.+||..|..+++. .+|+.|+.+..+++
T Consensus 644 LkCs~Cn~R~Kd~vI--~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVI--TKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhHHH--HhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 567777754332221 12357899999877764 47999999887765
No 89
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=27.00 E-value=40 Score=22.97 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=21.3
Q ss_pred ccCCCCCCCCCCcCCCceeecCCc--cccccchhHhhhhcccC
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDH--VLCKSCNAKRVQALTST 273 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~--~~C~~C~~~~~~~~~~~ 273 (278)
+|..|+..|.++. |.-|+..||. .+|..=-.+.+...-||
T Consensus 5 ~CsFcG~~I~PGt-G~m~Vr~Dg~v~~FcssKc~k~~~~~rnP 46 (66)
T COG2075 5 VCSFCGKKIEPGT-GIMYVRNDGKVLRFCSSKCEKLFKLGRNP 46 (66)
T ss_pred EecCcCCccCCCc-eEEEEecCCeEEEEechhHHHHHHccCCC
Confidence 5777888887653 4434444554 34543222355555554
No 90
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=26.70 E-value=35 Score=27.08 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=25.0
Q ss_pred CCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCC
Q psy15692 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVL 241 (278)
Q Consensus 198 ~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l 241 (278)
-.+|..|+.++.+-+..+-...|-..-...+.+-+.|..|++..
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence 35899999887654321100011122223456678899998875
No 91
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=26.55 E-value=4.2 Score=24.05 Aligned_cols=14 Identities=50% Similarity=1.030 Sum_probs=7.8
Q ss_pred ccccccCCCeeeCC
Q psy15692 78 FGECCKCGERILGE 91 (278)
Q Consensus 78 ~~~C~~C~~~I~~~ 91 (278)
.+.|..|+++|...
T Consensus 3 yg~C~~CGe~I~~~ 16 (36)
T PF01258_consen 3 YGICEDCGEPIPEE 16 (36)
T ss_dssp -SB-TTTSSBEEHH
T ss_pred CCCccccCChHHHH
Confidence 34577777777643
No 92
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=26.46 E-value=50 Score=20.12 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCcCCCceeecC-CccccccchhHhhhhc
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLD-DHVLCKSCNAKRVQAL 270 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~-~~~~C~~C~~~~~~~~ 270 (278)
+|+.|+++... ....+.-. +..+|..|-..-.+.+
T Consensus 3 ~CSFCgr~~~~---v~~li~g~~~~~IC~~Cv~~~~~il 38 (41)
T PF06689_consen 3 RCSFCGRPESE---VGRLISGPNGAYICDECVEQAYEIL 38 (41)
T ss_dssp B-TTT--BTTT---SSSEEEES-SEEEEHHHHHHHHHHH
T ss_pred CccCCCCCHHH---HhceecCCCCcEECHHHHHHHHHHH
Confidence 58889988763 22344434 6889999987665544
No 93
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=26.37 E-value=43 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=8.2
Q ss_pred CCcccCccccC
Q psy15692 200 RCCVCRAPIMP 210 (278)
Q Consensus 200 ~C~~C~~~I~~ 210 (278)
.|.+|+++|.+
T Consensus 2 ~Cd~C~~~i~G 12 (43)
T cd02340 2 ICDGCQGPIVG 12 (43)
T ss_pred CCCCCCCcCcC
Confidence 57888887764
No 94
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=26.25 E-value=62 Score=20.02 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=5.0
Q ss_pred ccchhhhhc
Q psy15692 187 IHCIQDFHK 195 (278)
Q Consensus 187 ~~C~~~y~~ 195 (278)
-+|..||..
T Consensus 24 dLC~~Cf~~ 32 (46)
T cd02249 24 DLCSSCYAK 32 (46)
T ss_pred cCHHHHHCc
Confidence 356666643
No 95
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=26.15 E-value=8.7 Score=28.21 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=6.4
Q ss_pred ccccccccccc
Q psy15692 139 EKCSVCVKPIL 149 (278)
Q Consensus 139 ~~C~~C~~~I~ 149 (278)
-+|.+|.+.++
T Consensus 63 iiCGvC~~~LT 73 (105)
T COG4357 63 IICGVCRKLLT 73 (105)
T ss_pred EEhhhhhhhhh
Confidence 45666666554
No 96
>PRK12495 hypothetical protein; Provisional
Probab=25.73 E-value=37 Score=29.00 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=5.7
Q ss_pred CCccccccchh
Q psy15692 254 DDHVLCKSCNA 264 (278)
Q Consensus 254 ~~~~~C~~C~~ 264 (278)
.|..+|..|..
T Consensus 56 pG~~~Cp~CQ~ 66 (226)
T PRK12495 56 DGQEFCPTCQQ 66 (226)
T ss_pred CCeeECCCCCC
Confidence 45555555553
No 97
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=25.71 E-value=19 Score=26.69 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=13.8
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhh
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQD 192 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~ 192 (278)
|+|+.|=-.---.....+.+|+++|..|
T Consensus 71 FTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 71 FTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred eeeeeeeeEechhhhccccCCCEecccc
Confidence 5555553222111122245678888776
No 98
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=25.30 E-value=44 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=17.5
Q ss_pred cCCCCCCCCC-CCCeEEcCCCcccchhh
Q psy15692 166 TCVVCGKSLD-GIPFTVDAANQIHCIQD 192 (278)
Q Consensus 166 ~C~~C~~~l~-~~~~~~~~~~~~~C~~~ 192 (278)
.|..|++.|. +...++-++.+.+|...
T Consensus 18 ~C~~C~k~L~~~~DiymYrGd~aFCS~E 45 (58)
T PF04570_consen 18 FCYLCKKKLDPGKDIYMYRGDKAFCSEE 45 (58)
T ss_pred HHHccCCCCCCCCCeeeeccccccccHH
Confidence 4788888887 44333336678888643
No 99
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=25.22 E-value=73 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=17.7
Q ss_pred cCCCCCCCCCCCCeEEc-CCCcccchhhhhc
Q psy15692 166 TCVVCGKSLDGIPFTVD-AANQIHCIQDFHK 195 (278)
Q Consensus 166 ~C~~C~~~l~~~~~~~~-~~~~~~C~~~y~~ 195 (278)
.|..|+.-++...|.-. ..+..+|..||.+
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhC
Confidence 46777777764443221 2245678888865
No 100
>KOG1829|consensus
Probab=24.86 E-value=28 Score=34.21 Aligned_cols=44 Identities=16% Similarity=0.477 Sum_probs=28.2
Q ss_pred CCcccCCCCCCCCCCcCC-CceeecCCccccccchhHhhhhcccC
Q psy15692 230 GCYRCEDCGLVLSSEAEG-RGCYPLDDHVLCKSCNAKRVQALTST 273 (278)
Q Consensus 230 ~Cf~C~~C~~~l~~~~~g-~~~~~~~~~~~C~~C~~~~~~~~~~~ 273 (278)
.-|+|+.|++.|..-.+. -.+=.+.|+.||..|+.--...+..+
T Consensus 339 Q~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPAR 383 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPAR 383 (580)
T ss_pred cCceecccCCCcccccccchhHhhhhhhhhCchhcccCccccccc
Confidence 568899999998731111 12334578899999986555445544
No 101
>PHA02929 N1R/p28-like protein; Provisional
Probab=24.81 E-value=45 Score=28.95 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=10.7
Q ss_pred CccccccCCCeeeCC
Q psy15692 77 LFGECCKCGERILGE 91 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~ 91 (278)
....|+-|...+...
T Consensus 173 ~~~eC~ICle~~~~~ 187 (238)
T PHA02929 173 KDKECAICMEKVYDK 187 (238)
T ss_pred CCCCCccCCcccccC
Confidence 346799998887654
No 102
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=24.76 E-value=53 Score=18.39 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=7.1
Q ss_pred cccCCCeeeCC
Q psy15692 81 CCKCGERILGE 91 (278)
Q Consensus 81 C~~C~~~I~~~ 91 (278)
|..|++.+.+.
T Consensus 3 C~~C~~~~~~~ 13 (30)
T PF03107_consen 3 CDVCRRKIDGF 13 (30)
T ss_pred CCCCCCCcCCC
Confidence 66676666654
No 103
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=24.63 E-value=20 Score=18.26 Aligned_cols=12 Identities=50% Similarity=1.085 Sum_probs=9.3
Q ss_pred cccCCCCCCCCC
Q psy15692 232 YRCEDCGLVLSS 243 (278)
Q Consensus 232 f~C~~C~~~l~~ 243 (278)
|+|..|++.+..
T Consensus 1 y~C~~C~~~f~~ 12 (23)
T PF00096_consen 1 YKCPICGKSFSS 12 (23)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCccCC
Confidence 678889888764
No 104
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=23.53 E-value=65 Score=25.94 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCeEEcCCCc--ccchhhhhcccCC
Q psy15692 167 CVVCGKSLDGIPFTVDAANQ--IHCIQDFHKKFAP 199 (278)
Q Consensus 167 C~~C~~~l~~~~~~~~~~~~--~~C~~~y~~~~~~ 199 (278)
|..|++.+.+..+.+..+|. ..|..|+ +|+.
T Consensus 3 CEiCG~~i~~~~~~v~iega~l~vC~~C~--k~G~ 35 (154)
T TIGR00270 3 CEICGRKIKGKGFKIVIEGSEMTVCGECR--KFGK 35 (154)
T ss_pred cccCCCccCCCCeEEEEcCeEEehhhhHH--hcCC
Confidence 88899999877666555554 4599887 5543
No 105
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=23.23 E-value=1e+02 Score=25.83 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=27.5
Q ss_pred eecCCCCCCCCCCCCeEEcCCCcccchhhhhc------------------ccCCCCcccCccccCC
Q psy15692 164 CFTCVVCGKSLDGIPFTVDAANQIHCIQDFHK------------------KFAPRCCVCRAPIMPD 211 (278)
Q Consensus 164 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~------------------~~~~~C~~C~~~I~~~ 211 (278)
-|.|..|...+..- .. ..=|..||..|..+ +-..+|..|+.+|...
T Consensus 18 ~~~CpICld~~~dP-Vv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 18 DFDCNICLDQVRDP-VV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred ccCCccCCCcCCCc-EE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 36666666655432 21 23466777777642 1235799999999754
No 106
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=23.15 E-value=71 Score=20.41 Aligned_cols=29 Identities=21% Similarity=0.622 Sum_probs=21.9
Q ss_pred ccccccCCCeeeC-CcceeeeCCccccccc
Q psy15692 78 FGECCKCGERILG-EGSGCTAMDKVYHISC 106 (278)
Q Consensus 78 ~~~C~~C~~~I~~-~~~~~~~~~~~~H~~C 106 (278)
...|..|+....+ .+-.|.+.+..|++.|
T Consensus 13 Y~~Cp~CGN~~vGngEG~liV~edtfkRtC 42 (49)
T PF12677_consen 13 YCKCPKCGNDKVGNGEGTLIVEEDTFKRTC 42 (49)
T ss_pred hccCcccCCcEeecCcceEEEeccceeeee
Confidence 5679999887653 3334788899999887
No 107
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=22.95 E-value=52 Score=23.95 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=11.4
Q ss_pred CccccccchhHhhhh
Q psy15692 255 DHVLCKSCNAKRVQA 269 (278)
Q Consensus 255 ~~~~C~~C~~~~~~~ 269 (278)
|..+|..|..+++..
T Consensus 70 GG~lc~~c~~~~i~~ 84 (93)
T COG2174 70 GGYLCANCVRERIKR 84 (93)
T ss_pred CceecHHHHHHHHHH
Confidence 468899999877643
No 108
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=22.46 E-value=26 Score=21.30 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=5.1
Q ss_pred CcccCccccC
Q psy15692 201 CCVCRAPIMP 210 (278)
Q Consensus 201 C~~C~~~I~~ 210 (278)
|..|...+..
T Consensus 3 C~IC~~~~~~ 12 (44)
T PF13639_consen 3 CPICLEEFED 12 (44)
T ss_dssp ETTTTCBHHT
T ss_pred CcCCChhhcC
Confidence 4555555543
No 109
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=22.30 E-value=25 Score=19.61 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=5.5
Q ss_pred CCCcccCcccc
Q psy15692 199 PRCCVCRAPIM 209 (278)
Q Consensus 199 ~~C~~C~~~I~ 209 (278)
.+|..|...|.
T Consensus 2 ~~C~rC~~~~~ 12 (30)
T PF06827_consen 2 EKCPRCWNYIE 12 (30)
T ss_dssp SB-TTT--BBE
T ss_pred CcCccCCCcce
Confidence 46777877775
No 110
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.78 E-value=52 Score=25.46 Aligned_cols=47 Identities=28% Similarity=0.697 Sum_probs=23.2
Q ss_pred eccccccccccccccccccccccc-c---eEEcCCcCCcCeecCCCCCCCCC
Q psy15692 128 AYCEQGYLDTLEKCSVCVKPILDR-I---LRATGRPYHPACFTCVVCGKSLD 175 (278)
Q Consensus 128 ~yC~~~y~~~~~~C~~C~~~I~~~-~---~~~~~~~~H~~Cf~C~~C~~~l~ 175 (278)
.||..|-......|..|..+|.+. + |...|.-|-+--| |..|+.++.
T Consensus 29 afcskcgeati~qcp~csasirgd~~vegvlglg~dye~psf-chncgs~fp 79 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGDYYVEGVLGLGGDYEPPSF-CHNCGSRFP 79 (160)
T ss_pred HHHhhhchHHHhcCCccCCcccccceeeeeeccCCCCCCcch-hhcCCCCCC
Confidence 355555544445566666666542 1 2223444444322 555655543
No 111
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=21.66 E-value=22 Score=21.06 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=12.5
Q ss_pred cccCcccCCCCeEeeCCeecccccccc
Q psy15692 110 DHCAVQLEGKPFYIIEGHAYCEQGYLD 136 (278)
Q Consensus 110 ~~C~~~l~~~~f~~~~g~~yC~~~y~~ 136 (278)
..|...+........=|..||.+|..+
T Consensus 2 ~iC~~~~~~~~~~~~CGH~fC~~C~~~ 28 (39)
T PF13923_consen 2 PICLDELRDPVVVTPCGHSFCKECIEK 28 (39)
T ss_dssp TTTTSB-SSEEEECTTSEEEEHHHHHH
T ss_pred CCCCCcccCcCEECCCCCchhHHHHHH
Confidence 344444433212344566677666543
No 112
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=21.32 E-value=31 Score=21.49 Aligned_cols=27 Identities=30% Similarity=0.693 Sum_probs=17.7
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchhHh
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~ 266 (278)
|.|..|+..+... ..+.+.|+.|..+.
T Consensus 3 Y~C~~Cg~~~~~~--------~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIK--------SKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecC--------CCCceECCCCCceE
Confidence 5788888776531 24568888887543
No 113
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=38 Score=27.58 Aligned_cols=44 Identities=23% Similarity=0.399 Sum_probs=26.9
Q ss_pred CCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCC
Q psy15692 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVL 241 (278)
Q Consensus 198 ~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l 241 (278)
..+|..|+.++..-....-...|--.-...|.+.++|..|++..
T Consensus 97 ~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 97 FSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred cccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 45899999998754311100011112335688899999998875
No 114
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=20.92 E-value=56 Score=27.47 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=4.9
Q ss_pred CcccCCCCCCC
Q psy15692 231 CYRCEDCGLVL 241 (278)
Q Consensus 231 Cf~C~~C~~~l 241 (278)
..+|..|+..+
T Consensus 172 ~~~C~~C~~v~ 182 (202)
T PF13901_consen 172 TVRCPKCKSVF 182 (202)
T ss_pred eeeCCcCcccc
Confidence 34444444444
No 115
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.89 E-value=26 Score=22.22 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=14.8
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchhH
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAK 265 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~ 265 (278)
|+|..|+..+.... -+..+..+.|..|...
T Consensus 6 y~C~~Cg~~fe~~~----~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 6 YRCTACGHRFEVLQ----KMSDDPLATCPECGGE 35 (52)
T ss_pred EEeCCCCCEeEEEE----ecCCCCCCCCCCCCCC
Confidence 46777776554210 0111345567777753
No 116
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=20.81 E-value=24 Score=22.64 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=22.2
Q ss_pred cccCCCCCCCCCCcCCCceeec----CCccccccchhHhhhhc
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPL----DDHVLCKSCNAKRVQAL 270 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~----~~~~~C~~C~~~~~~~~ 270 (278)
+.|..|+..+.-.+....||.. +.-..|+.|-.++-+..
T Consensus 5 l~C~dCg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR~~rk~~~ 47 (49)
T PF13451_consen 5 LTCKDCGAEFVFTAGEQKFYAEKGFDNEPKRCPSCRQARKQRR 47 (49)
T ss_pred EEcccCCCeEEEehhHHHHHHhcCCcCCCccCHHHHHHHHHhh
Confidence 5677777776432212234433 23467888887766544
No 117
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.80 E-value=53 Score=31.67 Aligned_cols=36 Identities=22% Similarity=0.547 Sum_probs=24.3
Q ss_pred ccccccccccccceEEcCCcCCcCeecCCCCCCCCC
Q psy15692 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLD 175 (278)
Q Consensus 140 ~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 175 (278)
.|..|-..+...-+++.+..-..+||.|-.|...|.
T Consensus 28 yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 28 YCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred ECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 355565555444455555555668999999999886
No 118
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=20.79 E-value=45 Score=26.33 Aligned_cols=29 Identities=38% Similarity=0.919 Sum_probs=20.6
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhccc
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALTS 272 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~~~ 272 (278)
+.|..||+++.. | -||..|.......+++
T Consensus 82 ~~CE~CG~~I~~---G---------r~C~~C~~~l~~~l~~ 110 (137)
T TIGR03826 82 YPCERCGTSIRE---G---------RLCDSCAGELKRQLSA 110 (137)
T ss_pred CcccccCCcCCC---C---------CccHHHHHHHHHHHHH
Confidence 678888888863 2 4788888777666544
No 119
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=20.79 E-value=37 Score=21.63 Aligned_cols=29 Identities=28% Similarity=0.753 Sum_probs=13.5
Q ss_pred eEeeCCeecccccccc---------ccccccccccccc
Q psy15692 121 FYIIEGHAYCEQGYLD---------TLEKCSVCVKPIL 149 (278)
Q Consensus 121 f~~~~g~~yC~~~y~~---------~~~~C~~C~~~I~ 149 (278)
.|...|-+-|.+||.= ..++|..|++++.
T Consensus 9 Wf~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 9 WFANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp -S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred hhcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 3455566666666642 1267777777764
No 120
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=20.72 E-value=69 Score=20.94 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=11.7
Q ss_pred ccCCCCCCCCCCcCCCceeecCCc
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDH 256 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~ 256 (278)
.|..|+..+.++. |..|+-.||+
T Consensus 5 ~C~f~g~~I~PG~-G~~~Vr~Dgk 27 (54)
T cd00472 5 KCSFCGYKIYPGH-GKMYVRNDGK 27 (54)
T ss_pred EecCcCCeecCCC-ccEEEecCCC
Confidence 3555555555442 4445555554
No 121
>KOG3576|consensus
Probab=20.70 E-value=24 Score=29.80 Aligned_cols=68 Identities=21% Similarity=0.450 Sum_probs=34.2
Q ss_pred cccccccccCcccCCCCeEeeCCeecccccccccccccccccccccccceEEcCCcCC--cCeecCCCCCCCCC
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILDRILRATGRPYH--PACFTCVVCGKSLD 175 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~~~~~~~~~~~~H--~~Cf~C~~C~~~l~ 175 (278)
.+=|.|..|++.+.-+. ..+..+-|..+..+ ..|..|++.+.|.+=.-+-..-| ..=|+|..|++.+.
T Consensus 115 ~d~ftCrvCgK~F~lQR--mlnrh~kch~~vkr--~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaft 184 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQR--MLNRHLKCHSDVKR--HLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFT 184 (267)
T ss_pred CCeeeeehhhhhhhHHH--HHHHHhhhccHHHH--HHHhhccCcccchhhhhhhhccccCccccchhhhhHHHH
Confidence 34577888877664321 12333445444332 56888888886532111111112 22256666666543
No 122
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.08 E-value=72 Score=31.99 Aligned_cols=26 Identities=27% Similarity=0.685 Sum_probs=15.8
Q ss_pred ccCCCCCCCCCCcCCCceeecCCccccccchhHhhhh
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~ 269 (278)
.|..|+..+.. +..+|..|..+.-+.
T Consensus 29 ~Cp~CG~~~~~-----------~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 29 PCPQCGTEVPV-----------DEAHCPNCGAETGTI 54 (645)
T ss_pred cCCCCCCCCCc-----------ccccccccCCcccch
Confidence 47777777652 345677777654433
Done!