Query psy15692
Match_columns 278
No_of_seqs 341 out of 1964
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:03:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 8.8E-30 3E-34 213.0 9.1 131 77-209 6-186 (192)
2 2xqn_T Testin, TESS; metal-bin 99.9 8.6E-29 2.9E-33 193.3 6.4 118 78-197 3-125 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 6.1E-29 2.1E-33 195.4 3.8 120 78-199 2-129 (131)
4 1rut_X Flinc4, fusion protein 99.9 1.2E-28 4.1E-33 205.4 5.2 154 78-234 5-170 (188)
5 2xjy_A Rhombotin-2; oncoprotei 99.9 5.3E-28 1.8E-32 190.0 8.3 122 139-269 3-129 (131)
6 2xqn_T Testin, TESS; metal-bin 99.9 1.1E-27 3.8E-32 186.9 8.2 119 139-267 4-125 (126)
7 2rgt_A Fusion of LIM/homeobox 99.9 9.8E-28 3.3E-32 196.6 7.0 145 78-233 6-156 (169)
8 2jtn_A LIM domain-binding prot 99.9 3.4E-27 1.1E-31 195.7 9.8 133 125-267 43-181 (182)
9 2jtn_A LIM domain-binding prot 99.9 1.4E-26 4.9E-31 191.8 8.5 118 77-196 59-180 (182)
10 2rgt_A Fusion of LIM/homeobox 99.9 1.6E-26 5.4E-31 189.4 8.3 121 139-269 7-129 (169)
11 1rut_X Flinc4, fusion protein 99.9 1.4E-26 4.6E-31 193.0 5.2 122 139-269 6-132 (188)
12 1b8t_A Protein (CRP1); LIM dom 99.9 4.7E-26 1.6E-30 190.3 7.6 122 139-271 8-178 (192)
13 2cup_A Skeletal muscle LIM-pro 99.9 1.1E-24 3.7E-29 163.4 6.0 95 77-171 4-101 (101)
14 2cup_A Skeletal muscle LIM-pro 99.9 4E-24 1.4E-28 160.3 7.2 94 139-238 6-101 (101)
15 1m3v_A FLIN4, fusion of the LI 99.8 6.4E-22 2.2E-26 153.3 2.4 107 77-198 4-115 (122)
16 1m3v_A FLIN4, fusion of the LI 99.8 5.7E-21 2E-25 148.0 3.2 107 139-270 6-117 (122)
17 2dlo_A Thyroid receptor-intera 99.8 4.6E-20 1.6E-24 132.5 5.8 79 125-203 2-80 (81)
18 1x3h_A Leupaxin; paxillin fami 99.8 1E-19 3.4E-24 130.4 5.6 78 125-203 1-79 (80)
19 2cuq_A Four and A half LIM dom 99.8 1.3E-19 4.5E-24 129.8 5.7 78 125-203 1-79 (80)
20 2ehe_A Four and A half LIM dom 99.8 8.1E-20 2.8E-24 131.5 4.4 78 125-203 1-81 (82)
21 1j2o_A FLIN2, fusion of rhombo 99.8 2E-19 6.7E-24 137.6 3.2 101 78-198 3-107 (114)
22 1x6a_A LIMK-2, LIM domain kina 99.7 1.1E-18 3.7E-23 125.2 5.8 79 125-203 1-81 (81)
23 1x63_A Skeletal muscle LIM-pro 99.7 1.1E-18 3.9E-23 125.4 5.2 77 125-202 1-80 (82)
24 1j2o_A FLIN2, fusion of rhombo 99.7 9.2E-19 3.2E-23 133.9 4.6 103 139-270 4-109 (114)
25 2cuq_A Four and A half LIM dom 99.7 4E-18 1.4E-22 121.9 5.1 77 184-271 1-77 (80)
26 2egq_A FHL1 protein; LIM domai 99.7 5.1E-18 1.8E-22 120.5 5.1 76 184-265 1-76 (77)
27 2ehe_A Four and A half LIM dom 99.7 3.5E-18 1.2E-22 122.9 3.5 78 184-270 1-78 (82)
28 1x63_A Skeletal muscle LIM-pro 99.7 7.2E-18 2.5E-22 121.2 5.2 80 184-272 1-80 (82)
29 1x3h_A Leupaxin; paxillin fami 99.7 8.1E-18 2.8E-22 120.4 4.7 76 184-270 1-76 (80)
30 1x6a_A LIMK-2, LIM domain kina 99.7 1.3E-17 4.4E-22 119.6 4.2 77 184-270 1-78 (81)
31 2egq_A FHL1 protein; LIM domai 99.7 1.7E-17 5.8E-22 117.8 3.9 70 125-195 1-76 (77)
32 2dlo_A Thyroid receptor-intera 99.6 9.3E-17 3.2E-21 115.1 4.7 75 184-270 2-77 (81)
33 1iml_A CRIP, cysteine rich int 99.6 1.8E-16 6E-21 112.3 4.6 70 139-209 1-72 (76)
34 1iml_A CRIP, cysteine rich int 99.6 1.6E-16 5.4E-21 112.5 4.0 70 79-149 1-72 (76)
35 1x68_A FHL5 protein; four-and- 99.6 6.9E-16 2.3E-20 109.2 6.1 68 78-145 5-75 (76)
36 1v6g_A Actin binding LIM prote 99.6 4.5E-16 1.5E-20 111.5 5.2 73 126-198 2-75 (81)
37 1x68_A FHL5 protein; four-and- 99.6 3.6E-16 1.2E-20 110.6 4.2 66 139-205 6-75 (76)
38 1v6g_A Actin binding LIM prote 99.6 3.6E-16 1.2E-20 112.0 4.2 74 185-269 2-76 (81)
39 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.1E-16 7.3E-21 113.2 3.0 71 77-148 6-77 (81)
40 2dj7_A Actin-binding LIM prote 99.6 7.3E-16 2.5E-20 110.2 5.1 65 76-142 13-78 (80)
41 2dar_A PDZ and LIM domain prot 99.6 9.2E-16 3.1E-20 112.1 5.6 70 133-203 19-89 (90)
42 2cur_A Skeletal muscle LIM-pro 99.6 7E-16 2.4E-20 107.0 4.3 64 139-203 6-69 (69)
43 2dar_A PDZ and LIM domain prot 99.6 2.9E-16 9.8E-21 114.8 2.3 65 76-142 23-88 (90)
44 1x61_A Thyroid receptor intera 99.6 6.1E-16 2.1E-20 108.2 3.4 68 77-144 4-71 (72)
45 2d8z_A Four and A half LIM dom 99.6 1E-15 3.4E-20 106.5 4.3 64 139-203 6-69 (70)
46 1wyh_A SLIM 2, skeletal muscle 99.6 1.6E-15 5.4E-20 106.0 4.3 65 78-142 5-70 (72)
47 2cu8_A Cysteine-rich protein 2 99.6 2.4E-15 8.2E-20 106.3 5.0 64 78-142 9-74 (76)
48 1x4k_A Skeletal muscle LIM-pro 99.6 1.7E-15 5.9E-20 105.9 4.2 65 78-142 5-70 (72)
49 1g47_A Pinch protein; LIM doma 99.6 1.2E-15 4.1E-20 108.1 3.4 66 77-142 10-76 (77)
50 1a7i_A QCRP2 (LIM1); LIM domai 99.6 9.3E-16 3.2E-20 109.8 2.8 69 139-208 8-77 (81)
51 1x64_A Alpha-actinin-2 associa 99.6 3.9E-15 1.3E-19 108.5 5.9 63 78-142 25-88 (89)
52 1x4l_A Skeletal muscle LIM-pro 99.5 2.5E-15 8.5E-20 105.1 4.1 65 77-141 4-71 (72)
53 2cur_A Skeletal muscle LIM-pro 99.5 1.9E-15 6.4E-20 104.9 3.3 65 77-143 4-69 (69)
54 1wyh_A SLIM 2, skeletal muscle 99.5 2.6E-15 8.9E-20 104.9 3.9 64 139-203 6-71 (72)
55 1x4k_A Skeletal muscle LIM-pro 99.5 3.1E-15 1E-19 104.6 4.2 64 139-203 6-71 (72)
56 1x4l_A Skeletal muscle LIM-pro 99.5 5.1E-15 1.7E-19 103.5 5.0 63 139-202 6-72 (72)
57 2d8z_A Four and A half LIM dom 99.5 2.1E-15 7.2E-20 104.9 3.0 64 77-142 4-68 (70)
58 1wig_A KIAA1808 protein; LIM d 99.5 6.5E-15 2.2E-19 103.3 5.1 69 195-273 2-70 (73)
59 2l4z_A DNA endonuclease RBBP8, 99.5 9.5E-15 3.3E-19 112.9 6.5 61 77-138 60-122 (123)
60 1nyp_A Pinch protein; LIM doma 99.5 3.6E-15 1.2E-19 102.4 3.3 61 139-200 6-66 (66)
61 2cu8_A Cysteine-rich protein 2 99.5 5.3E-15 1.8E-19 104.5 4.1 64 139-203 10-75 (76)
62 2dj7_A Actin-binding LIM prote 99.5 8E-15 2.7E-19 104.7 4.8 63 139-203 16-79 (80)
63 1x64_A Alpha-actinin-2 associa 99.5 7.4E-15 2.5E-19 107.1 4.6 64 139-203 26-89 (89)
64 2co8_A NEDD9 interacting prote 99.5 1.2E-14 4.2E-19 104.3 5.4 61 77-138 14-76 (82)
65 2cor_A Pinch protein; LIM doma 99.5 9.7E-15 3.3E-19 104.1 4.5 62 139-202 16-77 (79)
66 2d8x_A Protein pinch; LIM doma 99.5 1.2E-14 3.9E-19 101.1 4.3 63 139-202 6-68 (70)
67 1x62_A C-terminal LIM domain p 99.5 3.7E-15 1.3E-19 106.2 1.6 63 139-202 16-78 (79)
68 2d8y_A Eplin protein; LIM doma 99.5 9.3E-15 3.2E-19 107.0 3.7 65 78-143 15-80 (91)
69 1g47_A Pinch protein; LIM doma 99.5 9.8E-15 3.3E-19 103.3 3.6 63 139-202 12-76 (77)
70 1nyp_A Pinch protein; LIM doma 99.5 8.9E-15 3E-19 100.5 3.0 59 78-138 5-63 (66)
71 2d8x_A Protein pinch; LIM doma 99.5 1.2E-14 4.2E-19 100.9 3.4 60 77-138 4-63 (70)
72 1x62_A C-terminal LIM domain p 99.5 4.7E-15 1.6E-19 105.6 1.2 62 78-141 15-77 (79)
73 1x61_A Thyroid receptor intera 99.5 4.1E-14 1.4E-18 98.8 5.6 67 196-271 3-69 (72)
74 3f6q_B LIM and senescent cell 99.5 1.7E-14 6E-19 100.5 2.9 61 78-138 11-71 (72)
75 1wig_A KIAA1808 protein; LIM d 99.5 3.8E-14 1.3E-18 99.4 4.1 61 139-200 6-67 (73)
76 2cor_A Pinch protein; LIM doma 99.5 5.6E-14 1.9E-18 100.0 5.0 59 77-138 14-72 (79)
77 2l3k_A Rhombotin-2, linker, LI 99.4 3.7E-14 1.3E-18 109.6 3.4 77 134-211 1-83 (123)
78 2iyb_E Testin, TESS, TES; LIM 99.4 6.1E-14 2.1E-18 96.0 4.0 59 79-137 3-64 (65)
79 2d8y_A Eplin protein; LIM doma 99.4 6.2E-14 2.1E-18 102.5 4.0 64 139-203 16-80 (91)
80 2l3k_A Rhombotin-2, linker, LI 99.4 1.4E-13 4.8E-18 106.4 5.7 71 80-150 10-82 (123)
81 2iyb_E Testin, TESS, TES; LIM 99.4 8.1E-14 2.8E-18 95.4 3.4 61 197-266 1-64 (65)
82 3f6q_B LIM and senescent cell 99.4 1.3E-13 4.5E-18 96.0 4.1 65 194-267 7-71 (72)
83 2co8_A NEDD9 interacting prote 99.4 1.7E-13 5.9E-18 98.2 4.4 64 139-202 16-81 (82)
84 2l4z_A DNA endonuclease RBBP8, 99.3 3.7E-13 1.3E-17 103.9 3.9 65 195-267 58-122 (123)
85 1zfo_A LAsp-1; LIM domain, zin 97.8 5.7E-06 2E-10 47.3 1.3 28 79-107 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.6 1.4E-05 4.9E-10 45.6 0.5 29 198-232 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 82.9 0.24 8.3E-06 37.0 0.0 44 107-150 8-60 (133)
88 4gne_A Histone-lysine N-methyl 80.2 6.1 0.00021 28.7 6.8 80 77-192 14-102 (107)
89 4ap4_A E3 ubiquitin ligase RNF 78.9 1 3.5E-05 33.4 2.3 44 78-121 7-63 (133)
90 2eqg_A Tumor necrosis factor, 70.4 3.6 0.00012 24.6 2.7 22 250-271 22-43 (49)
91 2ysm_A Myeloid/lymphoid or mix 67.5 5.9 0.0002 28.7 4.0 75 78-166 7-85 (111)
92 2ysl_A Tripartite motif-contai 56.6 9.3 0.00032 24.8 3.1 45 165-211 21-70 (73)
93 1t1h_A Gspef-atpub14, armadill 54.3 4.6 0.00016 26.9 1.3 44 105-149 7-54 (78)
94 2djb_A Polycomb group ring fin 54.0 14 0.00049 24.0 3.7 47 164-211 15-63 (72)
95 2ect_A Ring finger protein 126 53.4 17 0.00058 23.9 4.1 41 199-243 16-64 (78)
96 2ecy_A TNF receptor-associated 53.1 10 0.00036 24.1 2.9 45 165-211 16-63 (66)
97 3vk6_A E3 ubiquitin-protein li 52.9 17 0.0006 26.0 4.1 42 167-209 4-48 (101)
98 2kwj_A Zinc finger protein DPF 52.7 5.5 0.00019 29.2 1.6 60 185-267 51-110 (114)
99 2ct0_A Non-SMC element 1 homol 52.3 5.8 0.0002 26.8 1.5 30 77-107 14-43 (74)
100 2ecm_A Ring finger and CHY zin 51.6 20 0.00069 21.6 4.0 10 199-208 44-53 (55)
101 1v9x_A Poly (ADP-ribose) polym 51.3 5.9 0.0002 29.2 1.5 19 78-96 20-38 (114)
102 2jrp_A Putative cytoplasmic pr 51.0 20 0.0007 24.5 4.1 10 80-89 4-13 (81)
103 2ecl_A Ring-box protein 2; RNF 50.4 5.9 0.0002 26.9 1.3 42 198-242 26-75 (81)
104 2dmj_A Poly (ADP-ribose) polym 49.0 5.7 0.0002 28.8 1.1 31 78-108 25-65 (106)
105 3v43_A Histone acetyltransfera 48.9 14 0.00049 26.8 3.3 57 99-166 33-93 (112)
106 2cs3_A Protein C14ORF4, MY039 48.2 12 0.00041 25.6 2.5 34 77-111 14-47 (93)
107 1jm7_B BARD1, BRCA1-associated 47.1 15 0.00053 26.5 3.3 45 165-210 23-67 (117)
108 1uw0_A DNA ligase III; DNA rep 47.1 7.4 0.00025 28.7 1.5 18 78-95 15-32 (117)
109 2kiz_A E3 ubiquitin-protein li 45.7 15 0.00051 23.5 2.7 31 77-107 13-44 (69)
110 2vpb_A Hpygo1, pygopus homolog 44.4 9.1 0.00031 25.0 1.4 29 78-106 8-39 (65)
111 1bor_A Transcription factor PM 44.2 12 0.00042 23.1 2.0 23 126-148 25-47 (56)
112 1jjd_A Metallothionein, SMTA; 43.7 11 0.00037 23.9 1.6 28 108-135 9-37 (55)
113 2d8t_A Dactylidin, ring finger 43.6 8 0.00028 25.2 1.1 11 139-149 50-60 (71)
114 2lo3_A SAGA-associated factor 43.4 9.4 0.00032 22.7 1.2 18 76-93 15-32 (44)
115 2csy_A Zinc finger protein 183 41.8 6.2 0.00021 26.5 0.3 9 80-88 17-25 (81)
116 3odc_A Poly [ADP-ribose] polym 41.7 7.3 0.00025 28.5 0.7 31 78-108 19-61 (111)
117 2y43_A E3 ubiquitin-protein li 41.6 5.6 0.00019 27.9 0.0 11 80-90 24-34 (99)
118 3od8_A Poly [ADP-ribose] polym 41.2 7.3 0.00025 28.8 0.6 32 77-108 37-78 (116)
119 2ct2_A Tripartite motif protei 41.1 23 0.0008 23.7 3.3 46 165-210 16-68 (88)
120 1chc_A Equine herpes virus-1 r 40.6 8 0.00027 24.8 0.7 10 140-149 42-51 (68)
121 1e4u_A Transcriptional repress 40.6 22 0.00076 23.8 3.0 47 165-211 12-63 (78)
122 1jm7_B BARD1, BRCA1-associated 40.4 16 0.00054 26.5 2.4 26 80-106 24-49 (117)
123 2ecv_A Tripartite motif-contai 40.1 25 0.00087 23.2 3.3 44 165-210 20-71 (85)
124 2gvi_A Conserved hypothetical 39.2 6 0.00021 32.2 -0.1 30 107-136 173-202 (204)
125 2ea6_A Ring finger protein 4; 39.1 9 0.00031 24.4 0.8 19 223-241 40-66 (69)
126 2ecn_A Ring finger protein 141 38.8 18 0.00063 23.1 2.3 44 165-211 16-61 (70)
127 3nw0_A Non-structural maintena 38.1 12 0.0004 31.2 1.5 30 77-107 179-208 (238)
128 4ayc_A E3 ubiquitin-protein li 37.8 9.4 0.00032 28.6 0.8 11 139-149 88-98 (138)
129 3dpl_R Ring-box protein 1; ubi 36.7 20 0.00068 25.7 2.4 24 219-242 69-100 (106)
130 3l11_A E3 ubiquitin-protein li 36.3 23 0.0008 25.3 2.8 44 164-209 15-61 (115)
131 2d8s_A Cellular modulator of i 35.2 37 0.0013 22.9 3.5 30 78-107 15-49 (80)
132 3ng2_A RNF4, snurf, ring finge 35.0 10 0.00034 24.4 0.5 10 233-242 53-62 (71)
133 1g25_A CDK-activating kinase a 34.5 23 0.00078 22.4 2.2 47 165-211 4-56 (65)
134 2kr4_A Ubiquitin conjugation f 34.3 13 0.00045 25.4 1.0 45 104-149 12-59 (85)
135 1iym_A EL5; ring-H2 finger, ub 34.1 66 0.0023 19.1 4.4 10 199-208 44-53 (55)
136 2e5r_A Dystrobrevin alpha; ZZ 34.0 32 0.0011 22.2 2.8 38 156-195 5-44 (63)
137 1wil_A KIAA1045 protein; ring 33.9 17 0.00059 25.1 1.5 33 77-109 14-46 (89)
138 2xeu_A Ring finger protein 4; 32.9 5.3 0.00018 25.2 -1.2 24 126-149 29-55 (64)
139 2ecw_A Tripartite motif-contai 32.4 25 0.00085 23.2 2.2 44 165-210 20-71 (85)
140 2kre_A Ubiquitin conjugation f 32.3 20 0.00069 25.3 1.8 45 104-149 27-74 (100)
141 2ckl_A Polycomb group ring fin 31.7 8.9 0.0003 27.3 -0.3 24 125-148 34-60 (108)
142 1wgm_A Ubiquitin conjugation f 31.6 16 0.00056 25.7 1.2 45 104-149 20-68 (98)
143 1weo_A Cellulose synthase, cat 31.5 33 0.0011 23.9 2.6 13 197-209 15-27 (93)
144 2jne_A Hypothetical protein YF 31.0 19 0.00063 25.6 1.3 11 79-89 33-43 (101)
145 2ep4_A Ring finger protein 24; 30.5 51 0.0018 21.1 3.6 25 185-209 37-63 (74)
146 1jm7_A BRCA1, breast cancer ty 30.2 30 0.001 24.3 2.5 45 165-211 22-71 (112)
147 4ic3_A E3 ubiquitin-protein li 30.0 42 0.0014 21.9 3.0 40 166-209 26-66 (74)
148 2cs2_A Poly [ADP-ribose] polym 29.4 15 0.0005 27.8 0.6 18 78-95 27-44 (134)
149 2l0b_A E3 ubiquitin-protein li 29.3 23 0.0008 24.2 1.7 10 223-232 61-70 (91)
150 2egp_A Tripartite motif-contai 29.3 31 0.0011 22.5 2.3 12 184-195 30-41 (79)
151 1twf_L ABC10-alpha, DNA-direct 29.1 13 0.00045 24.7 0.3 33 232-272 29-62 (70)
152 2yur_A Retinoblastoma-binding 28.8 50 0.0017 21.4 3.2 44 165-210 16-64 (74)
153 2dmi_A Teashirt homolog 3; zin 28.6 11 0.00038 26.5 -0.2 11 165-175 81-91 (115)
154 1x4j_A Ring finger protein 38; 28.3 35 0.0012 22.1 2.4 10 200-209 62-71 (75)
155 2ecg_A Baculoviral IAP repeat- 28.1 47 0.0016 21.7 3.0 41 166-210 27-68 (75)
156 3hct_A TNF receptor-associated 27.1 20 0.00069 25.9 1.0 42 107-149 19-64 (118)
157 2ysj_A Tripartite motif-contai 27.0 50 0.0017 20.4 2.9 34 231-269 20-53 (63)
158 2ecj_A Tripartite motif-contai 26.9 45 0.0015 20.1 2.6 33 232-269 16-48 (58)
159 1znf_A 31ST zinc finger from X 26.6 27 0.00091 16.6 1.2 12 232-243 2-13 (27)
160 2gvi_A Conserved hypothetical 26.5 18 0.00061 29.4 0.7 31 164-195 172-202 (204)
161 2das_A Zinc finger MYM-type pr 26.5 43 0.0015 21.5 2.3 25 233-260 22-48 (62)
162 3hcs_A TNF receptor-associated 25.7 21 0.00074 27.5 1.0 44 106-150 18-65 (170)
163 2yu4_A E3 SUMO-protein ligase 25.4 45 0.0015 23.0 2.6 35 231-270 7-42 (94)
164 2ckl_B Ubiquitin ligase protei 24.8 45 0.0015 25.5 2.8 27 184-210 73-102 (165)
165 1ard_A Yeast transcription fac 24.5 29 0.001 16.7 1.1 12 232-243 3-14 (29)
166 2ctu_A Zinc finger protein 483 23.9 28 0.00097 21.7 1.2 11 80-90 20-30 (73)
167 3lrq_A E3 ubiquitin-protein li 23.7 17 0.00058 25.5 0.0 10 80-89 24-33 (100)
168 2m0e_A Zinc finger and BTB dom 22.5 37 0.0013 16.2 1.3 12 232-243 3-14 (29)
169 2c2l_A CHIP, carboxy terminus 22.3 37 0.0013 28.1 1.9 45 104-149 206-254 (281)
170 2bay_A PRE-mRNA splicing facto 22.1 72 0.0025 20.1 2.9 41 231-276 3-45 (61)
171 1rmd_A RAG1; V(D)J recombinati 21.9 23 0.00078 25.4 0.4 25 125-149 41-69 (116)
172 1paa_A Yeast transcription fac 21.7 36 0.0012 16.6 1.2 12 232-243 3-14 (30)
173 4av1_A Poly [ADP-ribose] polym 21.1 20 0.0007 29.5 0.0 33 77-109 142-186 (223)
174 1klr_A Zinc finger Y-chromosom 20.5 41 0.0014 16.2 1.2 12 232-243 3-14 (30)
175 3knv_A TNF receptor-associated 20.4 17 0.00058 27.5 -0.6 41 107-148 32-76 (141)
176 4g9i_A Hydrogenase maturation 20.2 29 0.001 34.1 0.9 84 76-174 104-188 (772)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.96 E-value=8.8e-30 Score=212.98 Aligned_cols=131 Identities=22% Similarity=0.499 Sum_probs=118.5
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-c----------------
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E---------------- 139 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~---------------- 139 (278)
....|.+|+++|...+. |.++|+.||++||+|..|+.+|.+..|+.++|++||+.||.+++ +
T Consensus 6 ~~~~C~~C~~~I~~~~~-v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEE-VQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCEECTTTCCEECSSCC-EEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeE-EEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 45689999999986665 78999999999999999999999889999999999999998775 3
Q ss_pred --------------------------------cccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCc
Q psy15692 140 --------------------------------KCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQ 186 (278)
Q Consensus 140 --------------------------------~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~ 186 (278)
+|..|+++|. +..|.++++.||++||+|..|+++|.+..|+. .+++
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~ 163 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD-KDGE 163 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE-ETTE
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc-cCCE
Confidence 3889999997 46788999999999999999999998777764 7899
Q ss_pred ccchhhhhcccCCCCcccCcccc
Q psy15692 187 IHCIQDFHKKFAPRCCVCRAPIM 209 (278)
Q Consensus 187 ~~C~~~y~~~~~~~C~~C~~~I~ 209 (278)
+||..||.++|+++|.+|+++|.
T Consensus 164 ~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 164 IYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp EEEHHHHHHHTCCCCCCCCCCCC
T ss_pred EeCHHHHHHhcCCcCCCCCCccc
Confidence 99999999999999999999863
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=8.6e-29 Score=193.28 Aligned_cols=118 Identities=23% Similarity=0.537 Sum_probs=109.0
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccccccccccc--ccceE
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPIL--DRILR 154 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~--~~~~~ 154 (278)
.+.|++|+++|.++++ +.++|+.||++||+|..|+++|.+..|+.++|++||+.||.+++ ++|.+|+++|. +.+|.
T Consensus 3 ~~~C~~C~~~I~~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEY-TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CCBBTTTSSBCCSSCE-EEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred CCCCccCCCEeCCceE-EeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 3579999999997664 79999999999999999999999889999999999999999988 89999999998 57899
Q ss_pred EcCCcCC--cCeecCCCCCCCCCCCCeEEcCCCcccchhhhhccc
Q psy15692 155 ATGRPYH--PACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197 (278)
Q Consensus 155 ~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~ 197 (278)
++++.|| ++||+|..|+++|.+..|.. .+|++||..+|.++|
T Consensus 82 a~~~~~H~~~~CF~C~~C~~~l~~~~f~~-~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 82 YNNFSWHASTECFLCSCCSKCLIGQKFMP-VEGMVFCSVECKKRM 125 (126)
T ss_dssp ETTEEEESSTTTSBCTTTCCBCTTSEEEE-ETTEEESSHHHHHSC
T ss_pred CCCCEeeCCCCCcCcCCCCCccCCCeeEe-ECCEEcchHHhhhhc
Confidence 9999999 99999999999999888876 689999998988776
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.95 E-value=6.1e-29 Score=195.37 Aligned_cols=120 Identities=28% Similarity=0.615 Sum_probs=107.7
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccC--CCCeEeeCCeecccccccccc-c--ccccccccccc--
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYLDTL-E--KCSVCVKPILD-- 150 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~f~~~~g~~yC~~~y~~~~-~--~C~~C~~~I~~-- 150 (278)
.++|++|+++|.+.++ |.|+|+.||++||+|..|+.+|. +..|+.++|++||+.||.+++ + +|..|+++|.+
T Consensus 2 ~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYF-LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CCBBTTTCCBCCSSEE-EEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred cccCcCCCCEeCCcEE-EEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 3579999999998764 79999999999999999999996 468999999999999999988 5 89999999974
Q ss_pred cceEEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCC
Q psy15692 151 RILRATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAP 199 (278)
Q Consensus 151 ~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~ 199 (278)
.+|.+.++.||++||+|..|+++|. +..|.. .++++||..||.+++++
T Consensus 81 ~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 81 MTMRVKDKVYHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEWTKI 129 (131)
T ss_dssp EEEEETTEEEEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHHHHH
T ss_pred eeEeeCCceECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHHhhc
Confidence 6889999999999999999999995 666765 68999999999988753
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.95 E-value=1.2e-28 Score=205.38 Aligned_cols=154 Identities=25% Similarity=0.485 Sum_probs=118.2
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCC--CCeEeeCCeecccccccccc-c--ccccccccccc--
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEG--KPFYIIEGHAYCEQGYLDTL-E--KCSVCVKPILD-- 150 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f~~~~g~~yC~~~y~~~~-~--~C~~C~~~I~~-- 150 (278)
...|++|+++|.+.++ |.++|+.||++||+|..|+.+|.. ..||.++|++||+.||.+++ + +|..|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 5 WKRCAGCGGKIADRFL-LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCBBTTTCCBCCCSEE-EEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCcCccCCCEeCCcee-EEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 4679999999998764 799999999999999999999985 68999999999999999988 4 79999999974
Q ss_pred cceEEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCceeE----EEcCCc
Q psy15692 151 RILRATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVR----VVALDR 225 (278)
Q Consensus 151 ~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~----v~~~~~ 225 (278)
.+|.+.++.||++||+|..|+++|. +..|+. .++++||..||.++++++|...+..-.......+ +. ...++.
T Consensus 84 ~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~c~~~~~~~~~~~~g~~~~~~~~~~~-v~vvgep~l~g~ 161 (188)
T 1rut_X 84 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY-INGSLFCEHDRPTALINGHLNSGGSGGSGGSGGD-VMVVGEPTLMGG 161 (188)
T ss_dssp EEEEETTEEECGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGCCTTTC----------------CC-CEECCCCEETTC
T ss_pred EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEE-ECCeEECHHHHHHHhcccccccCCCCcccccCCc-ccccCCCcccCC
Confidence 5789999999999999999999996 666765 6899999999999999999877653110000000 11 134567
Q ss_pred ccccCCccc
Q psy15692 226 SFHIGCYRC 234 (278)
Q Consensus 226 ~~H~~Cf~C 234 (278)
.||++..+.
T Consensus 162 ~~~~~~~r~ 170 (188)
T 1rut_X 162 EFGDEDERL 170 (188)
T ss_dssp CCCCTTEEE
T ss_pred CCCCCCCce
Confidence 788777765
No 5
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.95 E-value=5.3e-28 Score=189.99 Aligned_cols=122 Identities=22% Similarity=0.563 Sum_probs=109.3
Q ss_pred ccccccccccccc-ceEEcCCcCCcCeecCCCCCCCCC--CCCeEEcCCCcccchhhhhcccCC--CCcccCccccCCCC
Q psy15692 139 EKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLD--GIPFTVDAANQIHCIQDFHKKFAP--RCCVCRAPIMPDSE 213 (278)
Q Consensus 139 ~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~~C~~~y~~~~~~--~C~~C~~~I~~~~~ 213 (278)
++|..|+++|.++ +|.++++.||++||+|..|+++|. +..|+. .+|++||..||.++|++ +|.+|+++|.+.+
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 6899999999987 689999999999999999999996 356654 78999999999999999 9999999998754
Q ss_pred CCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhh
Q psy15692 214 QDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 214 ~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~ 269 (278)
.+|.++++.||++||+|..|+++|.. |..|+..++++||..|+.++++.
T Consensus 81 ----~~~~a~~~~~H~~CF~C~~C~~~L~~---g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 81 ----MTMRVKDKVYHLECFKCAACQKHFCV---GDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp ----EEEEETTEEEEGGGCBCTTTCCBCCT---TCEEEEETTEEEEGGGHHHHHHH
T ss_pred ----eeEeeCCceECccCcccCCCCCCCCC---CCEEEEECCEEEcHHHHHHHhhc
Confidence 36789999999999999999999963 55799999999999999988764
No 6
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.94 E-value=1.1e-27 Score=186.91 Aligned_cols=119 Identities=26% Similarity=0.542 Sum_probs=107.2
Q ss_pred cccccccccccc-cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCce
Q psy15692 139 EKCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDET 217 (278)
Q Consensus 139 ~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~ 217 (278)
++|.+|+++|.+ .++.++|+.||++||+|..|+++|.+..|+. .+|++||..||.++|+++|.+|+++|.+.+
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~----- 77 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVM-VNDKPVCKPCYVKNHAVVCQGCHNAIDPEV----- 77 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEE-ETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-----
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEe-ECCEEechHHhCcCcCccCcccCCcCCcCc-----
Confidence 789999999984 6889999999999999999999999877765 789999999999999999999999999753
Q ss_pred eEEEcCCcccc--cCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhh
Q psy15692 218 VRVVALDRSFH--IGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRV 267 (278)
Q Consensus 218 ~~v~~~~~~~H--~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~ 267 (278)
.+|.++++.|| ++||+|..|+++|. |..|+..++++||..++.+.+
T Consensus 78 ~~~~a~~~~~H~~~~CF~C~~C~~~l~----~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 78 QRVTYNNFSWHASTECFLCSCCSKCLI----GQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CEEEETTEEEESSTTTSBCTTTCCBCT----TSEEEEETTEEESSHHHHHSC
T ss_pred eEEECCCCEeeCCCCCcCcCCCCCccC----CCeeEeECCEEcchHHhhhhc
Confidence 37889999999 99999999999997 456999999999997776543
No 7
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.94 E-value=9.8e-28 Score=196.60 Aligned_cols=145 Identities=26% Similarity=0.513 Sum_probs=118.2
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccc--cceE
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILD--RILR 154 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~--~~~~ 154 (278)
...|++|+++|.+.++ +.++|+.||++||+|..|+.+|.+.. |.++|++||+.||.+++ ++|.+|+++|.+ .++.
T Consensus 6 ~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFI-LKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp -CBBSSSSSBCCSSSC-EECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCccccCCCccCCcEE-EEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEEEE
Confidence 4679999999998775 78999999999999999999999875 58999999999999988 899999999975 4678
Q ss_pred EcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCCCCc--ccCccccCCCCCCceeEEEcCCcccccCC
Q psy15692 155 ATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAPRCC--VCRAPIMPDSEQDETVRVVALDRSFHIGC 231 (278)
Q Consensus 155 ~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~~C~--~C~~~I~~~~~~~~~~~v~~~~~~~H~~C 231 (278)
+.++.||++||+|..|+++|. +..|+...+|++||..||.++++..+. +.+.+. ..+.+....+|...
T Consensus 84 a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rpr---------t~~~~~q~~~l~~~ 154 (169)
T 2rgt_A 84 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGG---------TPMVAASPERHDGG 154 (169)
T ss_dssp ETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC-------------------EEEECCCCEECCSS
T ss_pred cCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCC---------CcccHHHHHHHHHH
Confidence 999999999999999999998 666766678999999999988866543 222222 14556666777777
Q ss_pred cc
Q psy15692 232 YR 233 (278)
Q Consensus 232 f~ 233 (278)
|.
T Consensus 155 f~ 156 (169)
T 2rgt_A 155 LQ 156 (169)
T ss_dssp CC
T ss_pred Hh
Confidence 65
No 8
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.94 E-value=3.4e-27 Score=195.67 Aligned_cols=133 Identities=29% Similarity=0.590 Sum_probs=114.0
Q ss_pred CCeecccccccc----ccccccccccccccc-ceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCC
Q psy15692 125 EGHAYCEQGYLD----TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199 (278)
Q Consensus 125 ~g~~yC~~~y~~----~~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~ 199 (278)
++..||..++.. ..++|..|+++|.+. ++.+.++.||++||+|..|+++|.+..|. .+|++||..||.++|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~--~~g~~yC~~~y~~~f~~ 120 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS--RGESVYCKDDFFKRFGT 120 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEE--ETTEEECHHHHHHTTSC
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCcee--ECCEeeecCcccccccc
Confidence 456788887752 238999999999976 67899999999999999999999987764 58999999999999999
Q ss_pred CCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceee-cCCccccccchhHhh
Q psy15692 200 RCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYP-LDDHVLCKSCNAKRV 267 (278)
Q Consensus 200 ~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~-~~~~~~C~~C~~~~~ 267 (278)
+|.+|+++|.+.+ .++.+.++.||++||+|..|+++|.. |..||. .++++||+.||.+..
T Consensus 121 kC~~C~~~I~~~~-----~v~~a~~~~~H~~CF~C~~C~~~L~~---g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 121 KCAACQLGIPPTQ-----VVRRAQDFVYHLHCFACVVCKRQLAT---GDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp CCTTTCCCCCSSC-----CCCEETTEECCTTTCCCTTTCCCCCT---TCEEEECTTSCEECHHHHHHHT
T ss_pred ccccCCCccCCCc-----eEEecCCCCEEeCCCcCCCCCCCCCC---CCceEEccCCEEECHHHHHHhh
Confidence 9999999998754 24578999999999999999999974 456765 578999999997653
No 9
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.93 E-value=1.4e-26 Score=191.85 Aligned_cols=118 Identities=28% Similarity=0.647 Sum_probs=105.9
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccccc--cce
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILD--RIL 153 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~--~~~ 153 (278)
....|++|+++|.+.++ +.++|+.||++||+|..|+.+|.+.. |.++|++||+.||.+++ ++|..|+++|.+ .++
T Consensus 59 ~~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~ 136 (182)
T 2jtn_A 59 EIPMCAGCDQHILDRFI-LKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR 136 (182)
T ss_dssp SCCBCBTSSSBCCCSEE-EEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred CCCcCccCCCCccCcee-EEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCceEE
Confidence 45789999999998764 78999999999999999999999876 57999999999999988 899999999975 467
Q ss_pred EEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcc
Q psy15692 154 RATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKK 196 (278)
Q Consensus 154 ~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~ 196 (278)
.+.++.||++||+|..|+++|. +..|+...+|++||..||.++
T Consensus 137 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 137 RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp EETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 8999999999999999999998 566766678999999999764
No 10
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.93 E-value=1.6e-26 Score=189.41 Aligned_cols=121 Identities=32% Similarity=0.670 Sum_probs=107.4
Q ss_pred ccccccccccccc-ceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCce
Q psy15692 139 EKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDET 217 (278)
Q Consensus 139 ~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~ 217 (278)
++|.+|+++|.++ +|.++|+.||++||+|..|+++|.+..|. .+|++||..||.++|+++|.+|+++|.+.+
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~--~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~----- 79 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS--RGESVYCKDDFFKRFGTKCAACQLGIPPTQ----- 79 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEE--SSSCEECHHHHHHHHSCBCTTTCCBCCTTS-----
T ss_pred CccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcc--cCCeeeecccccccccccccccccccCCCc-----
Confidence 7899999999976 68899999999999999999999987763 689999999999999999999999998754
Q ss_pred eEEEcCCcccccCCcccCCCCCCCCCCcCCCceee-cCCccccccchhHhhhh
Q psy15692 218 VRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYP-LDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 218 ~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~-~~~~~~C~~C~~~~~~~ 269 (278)
.++.++++.||++||+|..|+++|.. |..||. .++++||+.|+.+.++.
T Consensus 80 ~v~~a~~~~~H~~CF~C~~C~~~L~~---g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 80 VVRRAQDFVYHLHCFACVVCKRQLAT---GDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EEEEETTEEEEGGGCBCTTTCCBCCT---TCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EEEEcCCceEeeCCCcCCCCCCCCCC---CCceEEccCCeEECHHHHHHHhhc
Confidence 35679999999999999999999974 456765 58899999999888754
No 11
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.93 E-value=1.4e-26 Score=192.98 Aligned_cols=122 Identities=22% Similarity=0.535 Sum_probs=107.9
Q ss_pred ccccccccccccc-ceEEcCCcCCcCeecCCCCCCCCCC--CCeEEcCCCcccchhhhhcccCC--CCcccCccccCCCC
Q psy15692 139 EKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDG--IPFTVDAANQIHCIQDFHKKFAP--RCCVCRAPIMPDSE 213 (278)
Q Consensus 139 ~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~~C~~~y~~~~~~--~C~~C~~~I~~~~~ 213 (278)
++|..|+++|.++ +|.++++.||++||+|..|+++|.. ..|+. .+|++||..||.++|++ +|.+|+++|.+.+
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e- 83 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIPASE- 83 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEECTTS-
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccccCc-
Confidence 7899999999987 5899999999999999999999984 55654 78999999999999999 7999999998754
Q ss_pred CCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhh
Q psy15692 214 QDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 214 ~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~ 269 (278)
.+|.++++.||++||+|..|+++|.. |..|+..++++||..||.+++..
T Consensus 84 ----~~i~a~~~~~H~~CF~C~~C~~~L~~---g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 84 ----LVMRAQGNVYHLKCFTCSTCRNRLVP---GDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp ----EEEEETTEEECGGGCBCTTTCCBCCT---TCEEEEETTEEEEGGGCCTTTC-
T ss_pred ----EEEEcCCCEEeCCCCeECCCCCCCCC---CCeEEEECCeEECHHHHHHHhcc
Confidence 36789999999999999999999963 45799999999999999877644
No 12
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=4.7e-26 Score=190.31 Aligned_cols=122 Identities=32% Similarity=0.761 Sum_probs=108.8
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCC-----------------
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR----------------- 200 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~----------------- 200 (278)
++|..|+++|. +..|.++++.||++||+|..|+++|.+..|+. .+|++||+.||.++|+++
T Consensus 8 ~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~ 86 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAV-HGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86 (192)
T ss_dssp EECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEE-ETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCC
T ss_pred CcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEe-cCCEeeChhhhHhhcCccccccccccccEecCCCc
Confidence 78999999997 67889999999999999999999999877765 689999999999999887
Q ss_pred -------------------------------CcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCc
Q psy15692 201 -------------------------------CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRG 249 (278)
Q Consensus 201 -------------------------------C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~ 249 (278)
|.+|+++|.+.+ .|.++++.||++||+|..|+++|.. ..
T Consensus 87 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~------~v~a~~~~~H~~CF~C~~C~~~L~~----~~ 156 (192)
T 1b8t_A 87 SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE------KVIGAGKSWHKSCFRCAKCGKSLES----TT 156 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS------CEEETTEEECTTTCBCTTTCCBCCS----SS
T ss_pred ccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE------EEecCCCccchhcCCccccCCCCCC----Cc
Confidence 678999998653 5679999999999999999999974 35
Q ss_pred eeecCCccccccchhHhhhhcc
Q psy15692 250 CYPLDDHVLCKSCNAKRVQALT 271 (278)
Q Consensus 250 ~~~~~~~~~C~~C~~~~~~~~~ 271 (278)
|+..++++||+.||.+++...-
T Consensus 157 ~~~~~g~~yC~~cy~~~f~~kc 178 (192)
T 1b8t_A 157 LADKDGEIYCKGCYAKNFGPKG 178 (192)
T ss_dssp EEEETTEEEEHHHHHHHTCCCC
T ss_pred ccccCCEEeCHHHHHHhcCCcC
Confidence 9999999999999999987654
No 13
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.90 E-value=1.1e-24 Score=163.38 Aligned_cols=95 Identities=23% Similarity=0.536 Sum_probs=86.7
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccccccccccc--ccce
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPIL--DRIL 153 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~--~~~~ 153 (278)
....|.+|+++|..+...+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.+++ ++|..|+++|. +.+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 83 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNV 83 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEE
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEE
Confidence 34679999999985333489999999999999999999999888999999999999999988 89999999998 5789
Q ss_pred EEcCCcCCcCeecCCCCC
Q psy15692 154 RATGRPYHPACFTCVVCG 171 (278)
Q Consensus 154 ~~~~~~~H~~Cf~C~~C~ 171 (278)
.++++.||++||+|..|+
T Consensus 84 ~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 84 EYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ESSSCEEETTTCCCTTCC
T ss_pred EeCCcchHHhCCCCCCCC
Confidence 999999999999999996
No 14
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.90 E-value=4e-24 Score=160.29 Aligned_cols=94 Identities=26% Similarity=0.534 Sum_probs=86.2
Q ss_pred ccccccccccc--ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCCc
Q psy15692 139 EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDE 216 (278)
Q Consensus 139 ~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~ 216 (278)
++|..|+++|. +.+|.++++.||++||+|..|+++|.+..|+. .+|++||..||.++|+++|.+|+++|.+++
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~---- 80 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVA-KDNKILCNKCTTREDSPKCKGCFKAIVAGD---- 80 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEE-ETTEEECHHHHTTCCCCBCSSSCCBCCSSS----
T ss_pred CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeEC-cCCEEEChhHhhhhcCCccccCCCccccCC----
Confidence 78999999996 67899999999999999999999999877765 789999999999999999999999998653
Q ss_pred eeEEEcCCcccccCCcccCCCC
Q psy15692 217 TVRVVALDRSFHIGCYRCEDCG 238 (278)
Q Consensus 217 ~~~v~~~~~~~H~~Cf~C~~C~ 238 (278)
.+|.++++.||++||+|..|+
T Consensus 81 -~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 81 -QNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp -CEEESSSCEEETTTCCCTTCC
T ss_pred -eEEEeCCcchHHhCCCCCCCC
Confidence 378899999999999999996
No 15
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=6.4e-22 Score=153.34 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=92.1
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccC--CCCeEeeCCeecccccccccc-c--cccccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYLDTL-E--KCSVCVKPILDR 151 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~f~~~~g~~yC~~~y~~~~-~--~C~~C~~~I~~~ 151 (278)
....|++|+++|.+.++ +.++++.||++||+|..|+.+|. +..|+.++|++||+.||.+++ + +|++|+++|.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFL-LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCCCBSSSSSCCCSSCC-EEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCcccCCEeCCcEE-EEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 34679999999998875 79999999999999999999997 357999999999999999988 6 899999999976
Q ss_pred ceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccC
Q psy15692 152 ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198 (278)
Q Consensus 152 ~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~ 198 (278)
.+.+.++ ..|.+..|+. .++++||..||.+++.
T Consensus 83 ~~~~~g~-------------~~l~g~~f~~-~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 83 DVMVVGE-------------PTLMGGEFGD-EDERLITRLENTQFDA 115 (122)
T ss_dssp ESSSSSS-------------SSCCSCTTCC-TTCCCCEECTTTTTTC
T ss_pred heEEcCC-------------cCCCCCccEe-cCCEeEccCcchhchh
Confidence 6666553 3677888865 7899999999987664
No 16
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=5.7e-21 Score=147.98 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=90.2
Q ss_pred ccccccccccccc-ceEEcCCcCCcCeecCCCCCCCCC--CCCeEEcCCCcccchhhhhcccCC--CCcccCccccCCCC
Q psy15692 139 EKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLD--GIPFTVDAANQIHCIQDFHKKFAP--RCCVCRAPIMPDSE 213 (278)
Q Consensus 139 ~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~~C~~~y~~~~~~--~C~~C~~~I~~~~~ 213 (278)
++|..|+++|.+. +|.++++.||++||+|..|+++|. +..|+. .+|++||..||.++|++ +|.+|+++|.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~-- 82 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGG-- 82 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCE--
T ss_pred CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCCCccccCCCCcCch--
Confidence 7899999999987 589999999999999999999997 345654 78999999999999999 999999999864
Q ss_pred CCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhc
Q psy15692 214 QDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQAL 270 (278)
Q Consensus 214 ~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~ 270 (278)
.|++.++ ..|. |+.|+..++++||+.|+.++..+.
T Consensus 83 -----~~~~~g~-------------~~l~----g~~f~~~~~~~yC~~~~~~~~~~~ 117 (122)
T 1m3v_A 83 -----DVMVVGE-------------PTLM----GGEFGDEDERLITRLENTQFDAAN 117 (122)
T ss_dssp -----ESSSSSS-------------SSCC----SCTTCCTTCCCCEECTTTTTTCCS
T ss_pred -----heEEcCC-------------cCCC----CCccEecCCEeEccCcchhchhhc
Confidence 2345542 2343 668999999999999999887543
No 17
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=4.6e-20 Score=132.53 Aligned_cols=79 Identities=62% Similarity=1.156 Sum_probs=72.5
Q ss_pred CCeecccccccccccccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 125 EGHAYCEQGYLDTLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 125 ~g~~yC~~~y~~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
+|++||++||....++|..|+++|.+++|.+.++.||++||+|..|+++|.+..|..+.++++||..||.++|+++|++
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhhcCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 6899999999944489999999999999999999999999999999999998888765578999999999999999974
No 18
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1e-19 Score=130.36 Aligned_cols=78 Identities=23% Similarity=0.496 Sum_probs=72.5
Q ss_pred CCeecccccccccc-cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 125 EGHAYCEQGYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 125 ~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
+|++||++||.+++ ++|..|+++|.+++|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|.+
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFE-LDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEE-SSSCEECHHHHHHHHSSSCCC
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEe-ECCEEECHHHHHHHcCCCCCC
Confidence 47899999999988 8999999999999999999999999999999999999767765 789999999999999999974
No 19
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.3e-19 Score=129.77 Aligned_cols=78 Identities=22% Similarity=0.478 Sum_probs=72.7
Q ss_pred CCeecccccccccc-cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 125 EGHAYCEQGYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 125 ~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
+|++||++||.+++ ++|..|+++|.++.|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|..
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTS-RDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEE-CSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEe-ECCEEECHHHHHHHcCCCCCC
Confidence 58999999999987 8999999999998999999999999999999999999877765 789999999999999999964
No 20
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.1e-20 Score=131.51 Aligned_cols=78 Identities=26% Similarity=0.512 Sum_probs=72.3
Q ss_pred CCeecccccccccc-ccccccccccc--ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCC
Q psy15692 125 EGHAYCEQGYLDTL-EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRC 201 (278)
Q Consensus 125 ~g~~yC~~~y~~~~-~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C 201 (278)
+|++||++||.+++ ++|..|+++|. +.+|.++++.||++||+|..|+++|.+..|.. .++++||..||.++|+++|
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~-~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTC-QDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEE-ETTEEEETTTSSCCGGGSS
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEe-eCCEEECHHHHhhhcCCCC
Confidence 58999999999988 89999999998 67899999999999999999999999888865 6899999999999999999
Q ss_pred cc
Q psy15692 202 CV 203 (278)
Q Consensus 202 ~~ 203 (278)
.+
T Consensus 80 ~~ 81 (82)
T 2ehe_A 80 SS 81 (82)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 21
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=2e-19 Score=137.64 Aligned_cols=101 Identities=21% Similarity=0.368 Sum_probs=83.1
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCC--CCeEeeCCeecccccccccc-cccccccccccccceE
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEG--KPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILDRILR 154 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~ 154 (278)
.++|++|+++|.+.++ +.++++.||++||+|..|+.+|.. ..||.++|++||+.||.+++ ++|..|.. +.+|.
T Consensus 3 ~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~~~~ 78 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYF-LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GDVMV 78 (114)
T ss_dssp CBCBSSSCSCBCSSEE-EECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CSCCC
T ss_pred CCCCcCCCCeeCCcEE-EEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---CceeE
Confidence 4579999999998764 799999999999999999999974 58999999999999999988 88888762 33322
Q ss_pred EcCCcCCcCeecCCCCCCC-CCCCCeEEcCCCcccchhhhhcccC
Q psy15692 155 ATGRPYHPACFTCVVCGKS-LDGIPFTVDAANQIHCIQDFHKKFA 198 (278)
Q Consensus 155 ~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~~~~~~C~~~y~~~~~ 198 (278)
|+.+ |.+..|.. .++++||..||.++.+
T Consensus 79 ---------------~~~~~~~g~~f~~-~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 79 ---------------VGEPTLMGGEFGD-EDERLITRLENTQFDA 107 (114)
T ss_dssp ---------------SSCSSTTSSBCCC-SSSCCCEEEECTTCCC
T ss_pred ---------------cCCccCCCCeeEE-cCCEeecchhhhcccc
Confidence 3344 56777865 7899999999887654
No 22
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.1e-18 Score=125.24 Aligned_cols=79 Identities=18% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCeecccccccccc-cccccccccccccceEEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCCCCc
Q psy15692 125 EGHAYCEQGYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 125 ~g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++.+||++||.+++ ++|..|+++|.+++|.++++.||++||+|..|+++|. +..|.++.++++||..||.++|++.|.
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 36899999999988 8999999999999999999999999999999999997 567764578999999999999999876
Q ss_pred c
Q psy15692 203 V 203 (278)
Q Consensus 203 ~ 203 (278)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.1e-18 Score=125.40 Aligned_cols=77 Identities=23% Similarity=0.437 Sum_probs=71.0
Q ss_pred CCeecccccccccc-ccccccccccc--ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCC
Q psy15692 125 EGHAYCEQGYLDTL-EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRC 201 (278)
Q Consensus 125 ~g~~yC~~~y~~~~-~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C 201 (278)
++.+||++||.+++ ++|..|+++|. +++|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP-KGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEE-ETTEEEEHHHHHHHTSCCC
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEe-eCCEEECHHHHHHHhCCCC
Confidence 46899999999987 89999999998 67899999999999999999999999877765 6899999999999999998
Q ss_pred c
Q psy15692 202 C 202 (278)
Q Consensus 202 ~ 202 (278)
.
T Consensus 80 ~ 80 (82)
T 1x63_A 80 S 80 (82)
T ss_dssp S
T ss_pred C
Confidence 5
No 24
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=9.2e-19 Score=133.89 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=84.5
Q ss_pred ccccccccccccc-ceEEcCCcCCcCeecCCCCCCCCCC--CCeEEcCCCcccchhhhhcccCCCCcccCccccCCCCCC
Q psy15692 139 EKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDG--IPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQD 215 (278)
Q Consensus 139 ~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~ 215 (278)
++|.+|+++|.+. +|.++++.||++||+|..|+++|.. ..|+ ..+|++||..||.++|+++|..|.. +.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~~f~~~c~~c~~---~~---- 75 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLGGSGGHMGSG---GD---- 75 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHHHHTSCCSSCBS---CS----
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeE-EECCeeechHHHHHHhCcccCcCCC---Cc----
Confidence 6899999999987 7999999999999999999999974 4564 4789999999999999999998862 11
Q ss_pred ceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhc
Q psy15692 216 ETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQAL 270 (278)
Q Consensus 216 ~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~ 270 (278)
+|. |++.+. .|+.|++.++++||+.|+.++..+.
T Consensus 76 ---~~~---------------~~~~~~---~g~~f~~~~~~~~C~~~~~~~~~~~ 109 (114)
T 1j2o_A 76 ---VMV---------------VGEPTL---MGGEFGDEDERLITRLENTQFDAAN 109 (114)
T ss_dssp ---CCC---------------SSCSST---TSSBCCCSSSCCCEEEECTTCCCTT
T ss_pred ---eeE---------------cCCccC---CCCeeEEcCCEeecchhhhcccccc
Confidence 221 345544 2668999999999999998876543
No 25
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=4e-18 Score=121.93 Aligned_cols=77 Identities=23% Similarity=0.486 Sum_probs=69.4
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccch
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCN 263 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~ 263 (278)
+|++||+.||.++++++|.+|+++|.+. .|.++++.||++||+|..|+++|. +..|+..++++||+.|+
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~-------~v~a~~~~~H~~CF~C~~C~~~L~----~~~~~~~~~~~yC~~cy 69 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG-------GVTYRDQPWHRECLVCTGCQTPLA----GQQFTSRDEDPYCVACF 69 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC-------CEESSSSEECTTTCBCSSSCCBCT----TCCEEECSSSEEEHHHH
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc-------EEEECCchhhhhhCCcccCCCcCC----CCeeEeECCEEECHHHH
Confidence 4789999999999999999999999753 578999999999999999999996 34699999999999999
Q ss_pred hHhhhhcc
Q psy15692 264 AKRVQALT 271 (278)
Q Consensus 264 ~~~~~~~~ 271 (278)
.+++....
T Consensus 70 ~~~f~~~c 77 (80)
T 2cuq_A 70 GELFASGP 77 (80)
T ss_dssp HHHTTCST
T ss_pred HHHcCCCC
Confidence 99887653
No 26
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=120.48 Aligned_cols=76 Identities=21% Similarity=0.454 Sum_probs=65.5
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccch
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCN 263 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~ 263 (278)
++++||+.||.++++++|.+|+++|.+.. ....+|.++++.||++||+|..|+++|. +..|+..++++||+.||
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g--~~~~~~~a~~~~~H~~CF~C~~C~~~L~----~~~f~~~~~~~yC~~cy 74 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFG--KGSSVVAYEGQSWHDYCFHCKKCSVNLA----NKRFVFHQEQVYCPDCA 74 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCS--SCCCEEEETTEEEETTTCBCSSSCCBCT----TSCCCEETTEECCHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCC--CCceeEEECcceeCcccCEehhcCCCCC----CCccEeECCEEEChHHh
Confidence 46899999999999999999999999610 0013788999999999999999999997 34699999999999999
Q ss_pred hH
Q psy15692 264 AK 265 (278)
Q Consensus 264 ~~ 265 (278)
.+
T Consensus 75 ~~ 76 (77)
T 2egq_A 75 KK 76 (77)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 27
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-18 Score=122.90 Aligned_cols=78 Identities=27% Similarity=0.500 Sum_probs=68.8
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccch
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCN 263 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~ 263 (278)
+|++||+.||.++|+++|.+|+++|.+.+ .+|.++++.||++||+|..|+++|. +..|+..++++||+.|+
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-----~~~~a~~~~~H~~CF~C~~C~~~L~----~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-----RELFYEDRHFHEGCFRCCRCQRSLA----DEPFTCQDSELLCNDCY 71 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-----CBCCCSSCCCBTTTSBCTTTCCBCS----SCCEEEETTEEEETTTS
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-----EEEEeCCccccccCCeecCCCCccC----CCccEeeCCEEECHHHH
Confidence 47899999999999999999999998532 2677899999999999999999997 34699999999999999
Q ss_pred hHhhhhc
Q psy15692 264 AKRVQAL 270 (278)
Q Consensus 264 ~~~~~~~ 270 (278)
.+++...
T Consensus 72 ~~~~~~~ 78 (82)
T 2ehe_A 72 CSAFSSG 78 (82)
T ss_dssp SCCGGGS
T ss_pred hhhcCCC
Confidence 8887654
No 28
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=7.2e-18 Score=121.19 Aligned_cols=80 Identities=18% Similarity=0.447 Sum_probs=71.0
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccch
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCN 263 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~ 263 (278)
++.+||+.||.++++++|.+|+++|.+.+ .+|.++++.||++||+|..|+++|.. ..|+..++++||+.||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-----~~~~a~~~~~H~~CF~C~~C~~~L~~----~~~~~~~~~~yC~~cy 71 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-----QNVEYKGTVWHKDCFTCSNCKQVIGT----GSFFPKGEDFYCVTCH 71 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-----CEEECSSCEEETTTCCCSSSCCCCTT----SCEEEETTEEEEHHHH
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-----eEEEECccccccccCchhhCCCccCC----CccEeeCCEEECHHHH
Confidence 36899999999999999999999998653 26889999999999999999999974 3699999999999999
Q ss_pred hHhhhhccc
Q psy15692 264 AKRVQALTS 272 (278)
Q Consensus 264 ~~~~~~~~~ 272 (278)
.+++....|
T Consensus 72 ~~~f~~~~~ 80 (82)
T 1x63_A 72 ETKFASGPS 80 (82)
T ss_dssp HHHTSCCCS
T ss_pred HHHhCCCCC
Confidence 998877654
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=8.1e-18 Score=120.35 Aligned_cols=76 Identities=25% Similarity=0.551 Sum_probs=68.6
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccch
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCN 263 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~ 263 (278)
+|++||+.||.++++++|.+|+++|.+. .|.++++.||++||+|..|+++|.. ..|+..++++||+.|+
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~-------~v~a~~~~~H~~CF~C~~C~~~L~~----~~~~~~~~~~yC~~~y 69 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN-------YLSAMDTVWHPECFVCGDCFTSFST----GSFFELDGRPFCELHY 69 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS-------CEEETTEEECTTTCBCSSSCCBSCS----SCCEESSSCEECHHHH
T ss_pred CCCccchhHHhhhcCCccccCCCeecce-------eEEECCCeEecCcCChhhCCCCCCC----CcEEeECCEEECHHHH
Confidence 4789999999999999999999999863 5789999999999999999999974 3599999999999999
Q ss_pred hHhhhhc
Q psy15692 264 AKRVQAL 270 (278)
Q Consensus 264 ~~~~~~~ 270 (278)
.+++..+
T Consensus 70 ~~~f~~~ 76 (80)
T 1x3h_A 70 HHRRGSG 76 (80)
T ss_dssp HHHHSSS
T ss_pred HHHcCCC
Confidence 9988654
No 30
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.3e-17 Score=119.60 Aligned_cols=77 Identities=19% Similarity=0.440 Sum_probs=67.4
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCcee-ecCCccccccc
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCY-PLDDHVLCKSC 262 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~-~~~~~~~C~~C 262 (278)
++.+||+.||.++|+++|.+|+++|.+. .|.++++.||++||+|..|+++|.. |..|+ ..++++||+.|
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~-------~~~a~~~~~H~~CF~C~~C~~~L~~---g~~f~~~~~~~~~C~~c 70 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP-------FMVAGEFKYHPECFACMSCKVIIED---GDAYALVQHATLYCGKC 70 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC-------CBCCTTCCBCTTSCBCTTTCCBCCT---TSCEEECSSSCEEEHHH
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce-------EEEECCceeccccCCccCCCCccCC---CCcEEEeeCCEEECHHH
Confidence 3679999999999999999999999832 5789999999999999999999974 44577 47999999999
Q ss_pred hhHhhhhc
Q psy15692 263 NAKRVQAL 270 (278)
Q Consensus 263 ~~~~~~~~ 270 (278)
+.+++...
T Consensus 71 ~~~~~~~~ 78 (81)
T 1x6a_A 71 HNEVVSGP 78 (81)
T ss_dssp HHHHHCTT
T ss_pred HHHHhcCC
Confidence 99888654
No 31
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=117.77 Aligned_cols=70 Identities=24% Similarity=0.539 Sum_probs=64.1
Q ss_pred CCeecccccccccc-cccccccccccc-----cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhc
Q psy15692 125 EGHAYCEQGYLDTL-EKCSVCVKPILD-----RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHK 195 (278)
Q Consensus 125 ~g~~yC~~~y~~~~-~~C~~C~~~I~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 195 (278)
++++||++||.+++ ++|.+|+++|.+ .+|.+.++.||++||+|..|+++|.+..|+. .++++||..||.+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~-~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVF-HQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCE-ETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEe-ECCEEEChHHhcc
Confidence 47899999999988 899999999996 7899999999999999999999999877765 6899999999965
No 32
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=9.3e-17 Score=115.09 Aligned_cols=75 Identities=16% Similarity=0.344 Sum_probs=65.7
Q ss_pred CCcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeec-CCccccccc
Q psy15692 184 ANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPL-DDHVLCKSC 262 (278)
Q Consensus 184 ~~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~-~~~~~C~~C 262 (278)
+|++||+.||. +++++|.+|+++|.+. +|.++++.||++||+|..|+++|.+ ..|+.. ++++||+.|
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~-------~~~a~~~~~H~~CF~C~~C~~~L~~----~~f~~~~~g~~yC~~c 69 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR-------ILRAMGKAYHPGCFTCVVCHRGLDG----IPFTVDATSQIHCIED 69 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC-------CEEETTEEECTTTCBCSSSCCBCTT----SCEECCTTCCCEEHHH
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce-------eEEECCccccHHhcCcccCCCccCC----CeeEECCCCEEECHHH
Confidence 68999999998 7999999999999842 6789999999999999999999973 357765 689999999
Q ss_pred hhHhhhhc
Q psy15692 263 NAKRVQAL 270 (278)
Q Consensus 263 ~~~~~~~~ 270 (278)
|.+++...
T Consensus 70 y~~~f~~~ 77 (81)
T 2dlo_A 70 FHRKFASG 77 (81)
T ss_dssp HHHHTTSS
T ss_pred HHHHhcCc
Confidence 99887654
No 33
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.8e-16 Score=112.25 Aligned_cols=70 Identities=21% Similarity=0.456 Sum_probs=64.1
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccch-hhhhcccCCCCcccCcccc
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCI-QDFHKKFAPRCCVCRAPIM 209 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~~y~~~~~~~C~~C~~~I~ 209 (278)
|+|..|+++|. ++.|.+.++.||++||+|..|+++|.+..|+. .+|++||. .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAE-HEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEE-ETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceEC-cCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 68999999998 78899999999999999999999999877765 78999999 6999999999999998765
No 34
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.6e-16 Score=112.49 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=63.4
Q ss_pred cccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeeccc-ccccccc-ccccccccccc
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCE-QGYLDTL-EKCSVCVKPIL 149 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~-~~y~~~~-~~C~~C~~~I~ 149 (278)
+.|++|+++|...+. |.++|+.||++||+|..|+.+|.+..|+..+|++||+ .||.+++ ++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAER-VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGE-EEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceE-EEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 369999999996665 7999999999999999999999988999999999999 6999888 89999997654
No 35
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.9e-16 Score=109.19 Aligned_cols=68 Identities=24% Similarity=0.478 Sum_probs=60.7
Q ss_pred ccccccCCCeeeC--CcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccccccc
Q psy15692 78 FGECCKCGERILG--EGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCV 145 (278)
Q Consensus 78 ~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~ 145 (278)
...|++|+++|.+ ....|.++++.||++||+|..|+.+|.+..|+.+++++||+.||.+++ ++|+.+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 4579999999996 333479999999999999999999999889999999999999999988 8898764
No 36
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.5e-16 Score=111.52 Aligned_cols=73 Identities=21% Similarity=0.382 Sum_probs=62.1
Q ss_pred Ceecccccccccc-cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccC
Q psy15692 126 GHAYCEQGYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198 (278)
Q Consensus 126 g~~yC~~~y~~~~-~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~ 198 (278)
+.+||+.||.+++ ++|..|+++|.+++|.++++.||++||+|..|+++|....++...++.+||..||.+++.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 5789999999998 899999999999999999999999999999999999844443324445799999876553
No 37
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.6e-16 Score=110.65 Aligned_cols=66 Identities=24% Similarity=0.445 Sum_probs=61.7
Q ss_pred cccccccccccc----cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccC
Q psy15692 139 EKCSVCVKPILD----RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCR 205 (278)
Q Consensus 139 ~~C~~C~~~I~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~ 205 (278)
++|..|+++|.+ ++|.++++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT-QNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEE-ETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEe-ECCEEECHHHhhhhhCCcCCCCC
Confidence 799999999997 8899999999999999999999999887876 78999999999999999999875
No 38
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.6e-16 Score=112.03 Aligned_cols=74 Identities=20% Similarity=0.517 Sum_probs=62.6
Q ss_pred CcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCC-ccccccch
Q psy15692 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD-HVLCKSCN 263 (278)
Q Consensus 185 ~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~-~~~C~~C~ 263 (278)
+.+||..||.++|+++|.+|+++|.+. .|.++++.||++||+|..|+++|..+ .++..++ .+||+.|+
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~-------~v~a~~~~wH~~CF~C~~C~~~L~~~----~~~~~~~~~~~C~~C~ 70 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE-------VVSALGKTYHPDCFVCAVCRLPFPPG----DRVTFNGKECMCQKCS 70 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC-------CEEETTEEECTTTSSCSSSCCCCCSS----SCEEEETTEEEEHHHH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc-------eEEECCceeCccCCccccCCCCCCCC----CEEEeCCCCEEChhhh
Confidence 468999999999999999999999843 67899999999999999999999742 3555555 57999999
Q ss_pred hHhhhh
Q psy15692 264 AKRVQA 269 (278)
Q Consensus 264 ~~~~~~ 269 (278)
.+.+..
T Consensus 71 ~~~~~~ 76 (81)
T 1v6g_A 71 LPVSVS 76 (81)
T ss_dssp SCCSSC
T ss_pred cccCCC
Confidence 776654
No 39
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.60 E-value=2.1e-16 Score=113.19 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=55.4
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPI 148 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I 148 (278)
....|.+|+++|...+. +.++++.||++||+|..|+++|....|+.+++++||+.||.+++ ++|.+|++..
T Consensus 6 ~~~~C~~C~~~I~~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEE-VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSSTTE-EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCcCcCcCccccCcee-EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 34679999999987675 79999999999999999999999888999999999999999988 8999998754
No 40
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.3e-16 Score=110.20 Aligned_cols=65 Identities=35% Similarity=0.690 Sum_probs=58.3
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
.....|.+|+++|...+. |.++++.||++||+|..|+.+|.+ .|+.+++++||+.||.++| ++|+
T Consensus 13 ~~~~~C~~C~~~I~~~~~-v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQS-LLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp SSCSCCTTTCCCCSSSCC-EEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCCCcCcCCeeCCCeE-EEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 345689999999996665 799999999999999999999986 6999999999999999988 7886
No 41
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=9.2e-16 Score=112.14 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=62.5
Q ss_pred cccccc-cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 133 GYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 133 ~y~~~~-~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
.+...+ ++|..|+++|.+++|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|..
T Consensus 19 ~~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 19 IPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVE-EKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp ECTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEE-SSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEe-ECCEEECHHHHHHHcCCCCCC
Confidence 344444 8999999999999999999999999999999999999877765 789999999999999999964
No 42
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7e-16 Score=107.02 Aligned_cols=64 Identities=28% Similarity=0.610 Sum_probs=59.9
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|+++|.++.|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA-VEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEE-CSSCEEEHHHHHHHHTCSCCC
T ss_pred CCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEe-ECCEEECHHHhHHHhcCCCCC
Confidence 7899999999998999999999999999999999999877875 789999999999999999974
No 43
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=2.9e-16 Score=114.85 Aligned_cols=65 Identities=28% Similarity=0.452 Sum_probs=58.3
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
....+|++|+++|.++. |.++|+.||++||+|..|+++|.+..|+.+++++||+.||.+++ ++|+
T Consensus 23 ~~~~~C~~C~~~I~~~~--v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPF--LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp TCCCBBSSSCCBCCSCE--EEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCCccCCCEecceE--EEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 34568999999997543 68999999999999999999999888999999999999999888 7886
No 44
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=6.1e-16 Score=108.23 Aligned_cols=68 Identities=43% Similarity=0.961 Sum_probs=60.3
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVC 144 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C 144 (278)
....|.+|+++|.+.+..+.++++.||++||+|..|+.+|.+..|+.+++++||+.||.+++.+|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~~ 71 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSS 71 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCCC
Confidence 34679999999997544479999999999999999999998888999999999999999988777654
No 45
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1e-15 Score=106.49 Aligned_cols=64 Identities=30% Similarity=0.622 Sum_probs=59.7
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|+++|.++.|.+.++.||++||+|..|+++|.+..|.. .++++||..||.++|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTA-RDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEE-SSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEe-eCCeEECHHHHHHHhccccCC
Confidence 7899999999988899999999999999999999999877875 689999999999999999974
No 46
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.6e-15 Score=106.04 Aligned_cols=65 Identities=25% Similarity=0.546 Sum_probs=58.5
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
...|.+|+++|...+..+.++|+.||++||+|..|+.+|.+..|+..++++||+.||.+++ ++|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 4579999999997533479999999999999999999999888999999999999999888 7885
No 47
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2.4e-15 Score=106.34 Aligned_cols=64 Identities=20% Similarity=0.490 Sum_probs=58.4
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeeccc-ccccccc-cccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCE-QGYLDTL-EKCS 142 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~-~~y~~~~-~~C~ 142 (278)
...|++|+++|...+. |.++++.||++||+|..|+.+|.+..|+.+++++||+ .||.+++ ++|.
T Consensus 9 ~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK-VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPS 74 (76)
T ss_dssp CCBCTTTCCBCCTTTE-EEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCS
T ss_pred CCCCcCCCCEeECCeE-EEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccC
Confidence 4579999999997665 7899999999999999999999988899999999999 7999888 7775
No 48
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.7e-15 Score=105.86 Aligned_cols=65 Identities=20% Similarity=0.454 Sum_probs=58.9
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
...|.+|+++|.+.+..+.++|+.||++||+|..|+++|.+..|+.+++++||+.||.+++ ++|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 4579999999997654589999999999999999999999889999999999999999887 7775
No 49
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.2e-15 Score=108.08 Aligned_cols=66 Identities=24% Similarity=0.528 Sum_probs=57.5
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
....|++|+++|...+..+.++|+.||++||+|..|+.+|.+..|+.++|++||+.||.+++ ++|+
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 45689999999996554478999999999999999999999888999999999999999887 7775
No 50
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.56 E-value=9.3e-16 Score=109.83 Aligned_cols=69 Identities=26% Similarity=0.668 Sum_probs=54.5
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccc
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPI 208 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I 208 (278)
++|..|+++|. +..|.+.++.||++||+|..|+++|.+..|.. .++++||..||.++|+++|.+|++..
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAI-HDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEE-ETTEEECSHHHHHHCC----------
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEe-eCCEEECHHHHHHHhCCcccccCCcc
Confidence 78999999996 67899999999999999999999999777765 68999999999999999999998764
No 51
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.9e-15 Score=108.54 Aligned_cols=63 Identities=35% Similarity=0.709 Sum_probs=56.4
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
...|.+|+++|.+.. +.++++.||++||+|..|+.+|.+..|+.+++++||+.||.+++ +++.
T Consensus 25 ~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVGAV--VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCSCC--EESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecccE--EEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 457999999999743 68999999999999999999999888999999999999999887 6654
No 52
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.5e-15 Score=105.11 Aligned_cols=65 Identities=22% Similarity=0.460 Sum_probs=56.7
Q ss_pred CccccccCCCeeeC--CcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccc
Q psy15692 77 LFGECCKCGERILG--EGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKC 141 (278)
Q Consensus 77 ~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C 141 (278)
....|++|+++|.+ ++..+.++++.||++||+|..|+.+|.+..|+.+++++||+.||.+++ |++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 34679999999996 333479999999999999999999999889999999999999998876 443
No 53
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=1.9e-15 Score=104.86 Aligned_cols=65 Identities=29% Similarity=0.598 Sum_probs=58.1
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSV 143 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~ 143 (278)
....|.+|+++|.++ . |.++++.||++||+|..|+.+|.+..|+..++++||+.||.+++ ++|++
T Consensus 4 ~~~~C~~C~~~I~~~-~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSG-G-ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTT-C-EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeCcc-e-EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 345799999999875 3 69999999999999999999999889999999999999999887 78863
No 54
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.6e-15 Score=104.93 Aligned_cols=64 Identities=27% Similarity=0.598 Sum_probs=59.1
Q ss_pred ccccccccccc--ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|+++|. +.+|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP-DKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEE-ETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCC-cCCeEECHHHHHHHccCcCCC
Confidence 79999999998 67899999999999999999999999877765 689999999999999999974
No 55
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.1e-15 Score=104.57 Aligned_cols=64 Identities=27% Similarity=0.594 Sum_probs=58.8
Q ss_pred ccccccccccc--ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|+++|. +.+|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP-KDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEE-ETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCc-cCCeEECHHHHhHHhCCCCCC
Confidence 78999999998 46899999999999999999999999877765 789999999999999999964
No 56
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=5.1e-15 Score=103.49 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=58.0
Q ss_pred cccccccccccc----cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCc
Q psy15692 139 EKCSVCVKPILD----RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 139 ~~C~~C~~~I~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++|..|+++|.+ .+|.++++.||++||+|..|+++|.+..|.. .++++||..||.++|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~p~~g 72 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT-ERDDILCPDCGKDISGPSSG 72 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEE-CSSSEECHHHHHTCCCSSCC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEe-ECCEEEChhHcCcccCCCCC
Confidence 789999999986 7899999999999999999999999888875 78999999999999999863
No 57
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.1e-15 Score=104.85 Aligned_cols=64 Identities=30% Similarity=0.587 Sum_probs=57.8
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-cccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCS 142 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~ 142 (278)
....|.+|+++|.++. +.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++ ++|+
T Consensus 4 ~~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGG--VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCBCSSSCCBCCSSE--EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCcccCCeeccce--EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 3467999999998653 69999999999999999999999889999999999999999888 7875
No 58
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=6.5e-15 Score=103.33 Aligned_cols=69 Identities=17% Similarity=0.379 Sum_probs=59.6
Q ss_pred cccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhcccC
Q psy15692 195 KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALTST 273 (278)
Q Consensus 195 ~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~~~~ 273 (278)
.+|+++|.+|+++|.+. +|.++++.||++||+|..|+++|.. |..|+..++++||..|+.+...+...+
T Consensus 2 s~~~~~C~~C~~~I~~~-------~v~a~~~~wH~~CF~C~~C~~~L~~---~~~f~~~~~~~yC~~C~~~~~~~~~~r 70 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR-------VLEAGEKHYHPSCALCVRCGQMFAE---GEEMYLQGSSIWHPACRQAARTEDSGP 70 (73)
T ss_dssp CCSCCSCSSSCCCCSSC-------CBCCSSCCBCTTTSCCSSSCCCCCS---SCCCEEETTEEECTTHHHHTSSSSCCS
T ss_pred CcCcCCcccCCCEecCe-------eEEeCCCCCCCCcCEeCCCCCCCCC---CCeeEeeCCEEEChHHChHhhcccccC
Confidence 36789999999999863 5789999999999999999999973 456999999999999999887765544
No 59
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.53 E-value=9.5e-15 Score=112.89 Aligned_cols=61 Identities=30% Similarity=0.674 Sum_probs=54.9
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccC--CCCeEeeCCeecccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE--GKPFYIIEGHAYCEQGYLDTL 138 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~f~~~~g~~yC~~~y~~~~ 138 (278)
....|++|+++|.+.++ +.++|+.||++||+|..|+.+|. +..||.++|++||+.||.++|
T Consensus 60 ~~~~C~~C~~~I~~~~~-v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFL-LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp SCSBBSSSSSBCCSSSE-EEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred cCCcCcCCCCCcCCcEE-EEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 45689999999998764 79999999999999999999996 468999999999999998765
No 60
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.52 E-value=3.6e-15 Score=102.44 Aligned_cols=61 Identities=25% Similarity=0.556 Sum_probs=56.7
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCC
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR 200 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~ 200 (278)
++|.+|+++|.+++|.+.++.||++||+|..|+++|.+..|+. .+|++||..||.++|+++
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYE-RKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEE-ETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEe-ECCcEECHHHHHHHhCCC
Confidence 7899999999999999999999999999999999999877765 789999999999999875
No 61
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=5.3e-15 Score=104.55 Aligned_cols=64 Identities=20% Similarity=0.447 Sum_probs=58.8
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccch-hhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCI-QDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~~y~~~~~~~C~~ 203 (278)
++|..|+++|. ++.|.+.++.||++||+|..|+++|.+..|+. .++++||. .||.++|+++|.+
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE-HDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEE-ETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEe-ECCEEecchHHHHHhcccccCC
Confidence 79999999998 67899999999999999999999999877765 68999999 7999999999974
No 62
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=8e-15 Score=104.73 Aligned_cols=63 Identities=25% Similarity=0.571 Sum_probs=57.1
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|+++|. +++|.++++.||++||+|..|+++|.+. |+. .++++||..||.++|+++|.+
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~-~~~-~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGE-YIS-KDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSC-CEE-ETTEEECTTHHHHHTTCCSTT
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCC-eEE-ECCEEECHHHHHHHcCCCCCC
Confidence 68999999997 6789999999999999999999999974 543 689999999999999999974
No 63
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.4e-15 Score=107.06 Aligned_cols=64 Identities=19% Similarity=0.457 Sum_probs=58.6
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|++.|.+++|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|++++.+
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFF-VEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEE-ETTEEECHHHHHHHSSSCCCC
T ss_pred CCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEe-ECCEEECHHHHHHHhCCCCCC
Confidence 7899999999999999999999999999999999999766665 589999999999999999753
No 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.2e-14 Score=104.28 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=54.6
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeE--eeCCeecccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFY--IIEGHAYCEQGYLDTL 138 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~--~~~g~~yC~~~y~~~~ 138 (278)
....|.+|+++|+..+. |.++++.||++||+|..|+.+|....|+ .++|++||+.||.+++
T Consensus 14 ~~~~C~~C~~~I~~~e~-v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 14 AGDLCALCGEHLYVLER-LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SSCBCSSSCCBCCTTTB-CCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCCcccCCCcccceE-EEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhh
Confidence 45679999999987775 6899999999999999999999988888 4799999999998876
No 65
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=9.7e-15 Score=104.05 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=57.4
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCc
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++|..|+++|.+++|.++++.||++||+|..|+++|.+..| ..++++||..||.++|++++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f--~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR--ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE--EETTEEECHHHHHTTSCCSSC
T ss_pred CCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCE--eECCEEeCHHHHHHhCCCCCC
Confidence 78999999999999999999999999999999999998766 368999999999999999764
No 66
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.2e-14 Score=101.11 Aligned_cols=63 Identities=27% Similarity=0.595 Sum_probs=58.0
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCc
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++|..|+++|.+++|.+.++.||++||+|..|+++|.+..|.. .++++||..||.++|+++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVK-NAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEE-ETTEEECHHHHHHHHCCCSC
T ss_pred CcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEe-ECCeEECHHHhhhhcCCCCC
Confidence 6899999999999999999999999999999999999877765 68999999999999988753
No 67
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=3.7e-15 Score=106.18 Aligned_cols=63 Identities=22% Similarity=0.525 Sum_probs=58.2
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCc
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++|..|+++|.+++|.+.++.||++||+|..|+++|.+..|+. .++++||..||.++|++++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 16 PMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFF-VEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEE-SSSCEECHHHHHHHHSSCCC
T ss_pred CccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEe-ECCEEECHHHHHHHhCCCCC
Confidence 7999999999999999999999999999999999998766665 68999999999999999875
No 68
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=9.3e-15 Score=106.96 Aligned_cols=65 Identities=25% Similarity=0.570 Sum_probs=59.3
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKCSV 143 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C~~ 143 (278)
...|.+|+++|.+.+. |.++++.||++||+|..|+.+|....|+..++++||+.||.+++ ++|..
T Consensus 15 ~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~ 80 (91)
T 2d8y_A 15 RETCVECQKTVYPMER-LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNY 80 (91)
T ss_dssp SCBCTTTCCBCCTTSE-EECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCC
T ss_pred CCcCccCCCccCCcee-EEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCc
Confidence 4579999999998775 79999999999999999999999888999999999999999888 78863
No 69
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=9.8e-15 Score=103.34 Aligned_cols=63 Identities=27% Similarity=0.575 Sum_probs=55.9
Q ss_pred ccccccccccc--ccceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCc
Q psy15692 139 EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 139 ~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++|.+|+++|. +.++.+.++.||++||+|..|+++|.+..|+. .+|++||..||.++|+++|.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE-FEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEE-ETTEEECHHHHHHHCCCC--
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEe-ECCeEeCHHHHHHHhhcccC
Confidence 78999999996 57789999999999999999999999766664 68999999999999999996
No 70
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.49 E-value=8.9e-15 Score=100.48 Aligned_cols=59 Identities=32% Similarity=0.647 Sum_probs=53.7
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~ 138 (278)
...|++|+++|.+ .. +.++|+.||++||+|..|+.+|.+..|+..+|++||+.||.+++
T Consensus 5 ~~~C~~C~~~I~~-~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 5 VPICGACRRPIEG-RV-VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCEETTTTEECCS-CE-ECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHC
T ss_pred CCCCcccCCEecc-eE-EEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHh
Confidence 4679999999994 43 79999999999999999999999889999999999999998765
No 71
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.2e-14 Score=100.94 Aligned_cols=60 Identities=30% Similarity=0.562 Sum_probs=54.4
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~ 138 (278)
....|++|+++|.+. . +.++++.||++||+|..|+.+|....|+.+++++||+.||.+++
T Consensus 4 ~~~~C~~C~~~I~~~-~-~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR-V-IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp CSSBCSSSCCBCCSC-C-EEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCEecce-E-EEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 456799999999964 3 69999999999999999999999888999999999999998765
No 72
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=4.7e-15 Score=105.65 Aligned_cols=62 Identities=27% Similarity=0.650 Sum_probs=55.6
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc-ccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-EKC 141 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~-~~C 141 (278)
...|.+|+++|.+. . |.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++ +++
T Consensus 15 ~~~C~~C~~~I~~~-~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-F-VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCSSSCCCCCSS-C-EECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCccccCCCCccCc-E-EEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 45799999999985 3 79999999999999999999998878999999999999998876 554
No 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=4.1e-14 Score=98.78 Aligned_cols=67 Identities=30% Similarity=0.711 Sum_probs=58.1
Q ss_pred ccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhhcc
Q psy15692 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQALT 271 (278)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~~~ 271 (278)
.++++|.+|+++|.+.+ .+|.++++.||++||+|..|+++|. +..|+..++++||+.||.++++..+
T Consensus 3 ~~~~~C~~C~~~I~~~~-----~~~~a~~~~~H~~CF~C~~C~~~L~----~~~~~~~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-----AGVVALDRVFHVGCFVCSTCRAQLR----GQHFYAVERRAYCEGCYVATLESGP 69 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-----CCEECSSSEECTTTCBCSSSCCBCT----TSCEEESSSCEEEHHHHHHHHHTCS
T ss_pred CCCCCCccCCCccCCCc-----eEEEECCCeEcccCCcccccCCcCC----cCcCEeeCCeEECHHHHHHHHccCC
Confidence 46789999999998642 2678999999999999999999996 4569999999999999999986543
No 74
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.46 E-value=1.7e-14 Score=100.50 Aligned_cols=61 Identities=26% Similarity=0.611 Sum_probs=54.9
Q ss_pred ccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~ 138 (278)
...|++|+++|.+.+..+.++|+.||++||+|..|+.+|....|+..+|++||+.||.++|
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHT
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhh
Confidence 4579999999997775568999999999999999999998878999999999999998754
No 75
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.8e-14 Score=99.37 Aligned_cols=61 Identities=28% Similarity=0.526 Sum_probs=55.4
Q ss_pred cccccccccccccceEEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCCC
Q psy15692 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAPR 200 (278)
Q Consensus 139 ~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~~ 200 (278)
++|.+|+++|.+++|.++++.||++||+|..|+++|. +..|+. .++++||..||.++++..
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTSSSS
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhhccc
Confidence 7899999999999999999999999999999999998 667765 689999999999887653
No 76
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=5.6e-14 Score=100.05 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=52.8
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeecccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~ 138 (278)
...+|++|+++|.+.. |.++|+.||++||+|..|+.+|.+. +|.++|++||+.||.+++
T Consensus 14 ~~~~C~~C~~~I~~~~--v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 14 GKYICQKCHAIIDEQP--LIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMG 72 (79)
T ss_dssp CCCBCTTTCCBCCSCC--CCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTS
T ss_pred CCCCCccCCCEecceE--EEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhC
Confidence 4568999999999544 6899999999999999999999977 469999999999999887
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.44 E-value=3.7e-14 Score=109.61 Aligned_cols=77 Identities=25% Similarity=0.456 Sum_probs=66.3
Q ss_pred ccccc-c--cccccccccc--ccceEEcCCcCCcCeecCCCCCCCCC-CCCeEEcCCCcccchhhhhcccCCCCcccCcc
Q psy15692 134 YLDTL-E--KCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLD-GIPFTVDAANQIHCIQDFHKKFAPRCCVCRAP 207 (278)
Q Consensus 134 y~~~~-~--~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~ 207 (278)
|.+++ . +|..|+++|. +.+|.+.++.||.+||+|..|+++|. +..|+. .++++||..||.++++++|..++.+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTKINGGSGGSG 79 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHHHHTCCCCCC
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhccccCCCCCC
Confidence 44555 4 8999999998 57889999999999999999999995 666765 6899999999999999999998888
Q ss_pred ccCC
Q psy15692 208 IMPD 211 (278)
Q Consensus 208 I~~~ 211 (278)
+.+.
T Consensus 80 ~~~~ 83 (123)
T 2l3k_A 80 GSGG 83 (123)
T ss_dssp SCCS
T ss_pred CccC
Confidence 7644
No 78
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.43 E-value=6.1e-14 Score=96.01 Aligned_cols=59 Identities=27% Similarity=0.496 Sum_probs=52.0
Q ss_pred cccccCCCeeeCCcceeeeCCcccc--cccccccccCcccCCCCeEeeCCeecc-ccccccc
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYH--ISCFTCDHCAVQLEGKPFYIIEGHAYC-EQGYLDT 137 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~f~~~~g~~yC-~~~y~~~ 137 (278)
..|++|+++|...+..|.++|+.|| ++||+|..|+.+|.+..|+.++|++|| .+||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4699999999964224799999999 999999999999999899999999999 7888653
No 79
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=6.2e-14 Score=102.54 Aligned_cols=64 Identities=25% Similarity=0.540 Sum_probs=58.1
Q ss_pred cccccccccccc-cceEEcCCcCCcCeecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcc
Q psy15692 139 EKCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCV 203 (278)
Q Consensus 139 ~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~ 203 (278)
++|..|+++|.+ ..|.++++.||++||+|..|+++|.+..|+. .++++||..||.++|+++|.-
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f~~kc~~ 80 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYAS-LHGRIYCKPHFNQLFKSKGNY 80 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCC-SSSCCCCHHHHHHHSCCCSCC
T ss_pred CcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEe-ECCEEECHHHHHHHhCCCcCc
Confidence 789999999985 6789999999999999999999999776654 789999999999999999973
No 80
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.42 E-value=1.4e-13 Score=106.37 Aligned_cols=71 Identities=25% Similarity=0.489 Sum_probs=62.6
Q ss_pred ccccCCCeeeCCcceeeeCCcccccccccccccCccc-CCCCeEeeCCeecccccccccc-cccccccccccc
Q psy15692 80 ECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQGYLDTL-EKCSVCVKPILD 150 (278)
Q Consensus 80 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~f~~~~g~~yC~~~y~~~~-~~C~~C~~~I~~ 150 (278)
.|++|+++|...+..+.++++.||++||+|..|+++| .+..|+..++++||+.||.+++ ++|..+...+..
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~ 82 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSG 82 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCcc
Confidence 6999999999755447899999999999999999999 4567999999999999999888 789888877653
No 81
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.41 E-value=8.1e-14 Score=95.39 Aligned_cols=61 Identities=30% Similarity=0.643 Sum_probs=52.8
Q ss_pred cCCCCcccCccccCCCCCCceeEEEcCCcccc--cCCcccCCCCCCCCCCcCCCceeecCCcccc-ccchhHh
Q psy15692 197 FAPRCCVCRAPIMPDSEQDETVRVVALDRSFH--IGCYRCEDCGLVLSSEAEGRGCYPLDDHVLC-KSCNAKR 266 (278)
Q Consensus 197 ~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H--~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C-~~C~~~~ 266 (278)
|+++|.+|+++|.+.+ ..|.++|+.|| ++||+|..|+++|. +..|+..++++|| ..|+.+.
T Consensus 1 fa~~C~~C~~~I~~~~-----~~v~a~~~~wH~~~~CF~C~~C~~~L~----~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-----QRVTYNNFSWHASTECFLCSCCSKCLI----GQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTS-----CEEEETTEEEETTTTTSBCTTTCCBCT----TSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCc-----eEEEECCCccCCCCCCEECCCCCCcCC----CCceEEECCEEecCHHHhhhh
Confidence 5788999999999642 27889999999 99999999999997 4569999999999 8999764
No 82
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.40 E-value=1.3e-13 Score=95.99 Aligned_cols=65 Identities=15% Similarity=0.349 Sum_probs=56.4
Q ss_pred hcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhh
Q psy15692 194 HKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRV 267 (278)
Q Consensus 194 ~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~ 267 (278)
...++++|.+|+++|.+.+ .++.+.++.||++||+|..|+++|... .|+..++++||..||.+++
T Consensus 7 ~~~~~~~C~~C~~~i~~~e-----~~~~~~~~~~H~~CF~C~~C~~~L~~~----~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAE-----KIVNSNGELYHEQCFVCAQCFQQFPEG----LFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTC-----EEEEETTEEEETTTSSCTTTCCCCGGG----CCEEETTEEECHHHHHHHT
T ss_pred cCcCCccchhcCccccCCc-----eEEEeCcCeeCcCCCcccCCCCCCCCC----CeEeECCeEeCHHHHHHhh
Confidence 4567899999999999764 246799999999999999999999742 5899999999999998875
No 83
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.7e-13 Score=98.20 Aligned_cols=64 Identities=19% Similarity=0.446 Sum_probs=56.4
Q ss_pred ccccccccccc-ccceEEcCCcCCcCeecCCCCCCCCCCCCeEE-cCCCcccchhhhhcccCCCCc
Q psy15692 139 EKCSVCVKPIL-DRILRATGRPYHPACFTCVVCGKSLDGIPFTV-DAANQIHCIQDFHKKFAPRCC 202 (278)
Q Consensus 139 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~~~C~~~y~~~~~~~C~ 202 (278)
++|..|+++|. .+.|.++++.||.+||+|..|+++|.+..|.. +.++++||+.||.++|+..+.
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 78999999996 46788999999999999999999999888774 478999999999999877543
No 84
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.35 E-value=3.7e-13 Score=103.91 Aligned_cols=65 Identities=23% Similarity=0.473 Sum_probs=56.1
Q ss_pred cccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchhHhh
Q psy15692 195 KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRV 267 (278)
Q Consensus 195 ~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~ 267 (278)
..++++|.+|+++|.+.. +|.++++.||++||+|..|+++|.. .|..||..++++||+.||.+++
T Consensus 58 ~~~~~~C~~C~~~I~~~~------~v~a~~~~wH~~CF~C~~C~~~L~~--~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF------LLYAMDSYWHSRCLKCSSCQAQLGD--IGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS------EEEETTEEEETTTSBCTTTCCBGGG--TTCCCBCSSSCCBCHHHHHHHC
T ss_pred CccCCcCcCCCCCcCCcE------EEEeCCcEEcccccCcCcCCCcccc--cCCceEEECCEEeCHHHhhhhc
Confidence 456789999999998642 6889999999999999999999962 1457999999999999999876
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.80 E-value=5.7e-06 Score=47.33 Aligned_cols=28 Identities=29% Similarity=0.845 Sum_probs=25.2
Q ss_pred cccccCCCeeeCCcceeeeCCcccccccc
Q psy15692 79 GECCKCGERILGEGSGCTAMDKVYHISCF 107 (278)
Q Consensus 79 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 107 (278)
..|..|++.|+..+. +.++|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek-~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK-VNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGC-CCSSSSCCCGGGC
T ss_pred CcCCccCCEEeccee-EEECCeEecccCC
Confidence 369999999998886 7899999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.56 E-value=1.4e-05 Score=45.63 Aligned_cols=29 Identities=31% Similarity=0.843 Sum_probs=25.6
Q ss_pred CCCCcccCccccCCCCCCceeEEEcCCcccccCCc
Q psy15692 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCY 232 (278)
Q Consensus 198 ~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf 232 (278)
.++|..|++.|.+.+ .+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~E------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE------KVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG------CCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce------eEEECCeEecccCC
Confidence 578999999999775 67799999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=82.94 E-value=0.24 Score=37.00 Aligned_cols=44 Identities=27% Similarity=0.520 Sum_probs=22.1
Q ss_pred ccccccCcccCCC-----C-eEeeCCeecccccccccc---cccccccccccc
Q psy15692 107 FTCDHCAVQLEGK-----P-FYIIEGHAYCEQGYLDTL---EKCSVCVKPILD 150 (278)
Q Consensus 107 f~C~~C~~~l~~~-----~-f~~~~g~~yC~~~y~~~~---~~C~~C~~~I~~ 150 (278)
+.|..|...+... . ....=|+.||..|..+.+ ..|..|++.+..
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4566665554321 1 223345666666654432 456666666543
No 88
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=80.18 E-value=6.1 Score=28.74 Aligned_cols=80 Identities=21% Similarity=0.471 Sum_probs=48.2
Q ss_pred CccccccCCCeeeCCcceeeeC----CcccccccccccccCcccCCCCeEeeCCeecccccccccccccccccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAM----DKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILDRI 152 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~~~~ 152 (278)
....|..|+. ++++ |..+ .+.||..|+. |... -.|.-||..| .|..|++...
T Consensus 14 ~~~~C~~C~~---~G~l-l~CD~~~Cp~~fH~~Cl~-------L~~~----P~g~W~Cp~c------~C~~C~k~~~--- 69 (107)
T 4gne_A 14 HEDYCFQCGD---GGEL-VMCDKKDCPKAYHLLCLN-------LTQP----PYGKWECPWH------QCDECSSAAV--- 69 (107)
T ss_dssp SCSSCTTTCC---CSEE-EECCSTTCCCEECTGGGT-------CSSC----CSSCCCCGGG------BCTTTCSBCC---
T ss_pred CCCCCCcCCC---CCcE-eEECCCCCCcccccccCc-------CCcC----CCCCEECCCC------CCCcCCCCCC---
Confidence 4457999983 3343 3333 3689988864 4332 2567788877 4777777643
Q ss_pred eEEcCCcCCcCeecCCCCCC-----CCCCCCeEEcCCCcccchhh
Q psy15692 153 LRATGRPYHPACFTCVVCGK-----SLDGIPFTVDAANQIHCIQD 192 (278)
Q Consensus 153 ~~~~~~~~H~~Cf~C~~C~~-----~l~~~~~~~~~~~~~~C~~~ 192 (278)
|.|..|.. -+.+.-+....+|.+.|.+|
T Consensus 70 ------------~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c~~~~ 102 (107)
T 4gne_A 70 ------------SFCEFCPHSFCKDHEKGALVPSALEGRLCCSEH 102 (107)
T ss_dssp ------------EECSSSSCEECTTTCTTSCEECTTTTCEECTTS
T ss_pred ------------cCcCCCCcchhhhccCCcceecCCCCceecCCC
Confidence 45555544 34555565556677667655
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=78.90 E-value=1 Score=33.41 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=29.4
Q ss_pred ccccccCCCeeeCC-----cceeeeCCcccccccc--------cccccCcccCCCCe
Q psy15692 78 FGECCKCGERILGE-----GSGCTAMDKVYHISCF--------TCDHCAVQLEGKPF 121 (278)
Q Consensus 78 ~~~C~~C~~~I~~~-----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~f 121 (278)
...|.-|...+... ...+..-|..||..|+ .|-.|+..+.....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 45699998876532 1123445888888887 78888888875543
No 90
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=70.41 E-value=3.6 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=17.2
Q ss_pred eeecCCccccccchhHhhhhcc
Q psy15692 250 CYPLDDHVLCKSCNAKRVQALT 271 (278)
Q Consensus 250 ~~~~~~~~~C~~C~~~~~~~~~ 271 (278)
|...+-+++|..|+.++.+...
T Consensus 22 ~mSVnTQP~CHEC~errq~~~n 43 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQKNQN 43 (49)
T ss_dssp BCCTTTTTSCHHHHHHHHTTSC
T ss_pred EEEecCccchHHHHHHHhhccc
Confidence 4556889999999998876543
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.49 E-value=5.9 Score=28.71 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=40.3
Q ss_pred ccccccCCCeeeCCcc-eeeeCCcccccccccccccCcccCCCCeEeeCCeeccccccccccccccccccccccc-ceEE
Q psy15692 78 FGECCKCGERILGEGS-GCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILDR-ILRA 155 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~~~-~~~~ 155 (278)
...|..|+..-....+ ....-++.||..|+.=. +.. ...+.-+|.+|. .|..|++.-.+. +|.-
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~-----~~~----~~~~~W~C~~C~-----~C~~C~~~~~~~~ll~C 72 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA-----VTP----LKRAGWQCPECK-----VCQNCKQSGEDSKMLVC 72 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCC-----CCT----TTSTTCCCTTTC-----CCTTTCCCSCCTTEEEC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCc-----ccc----ccccCccCCcCC-----cccccCccCCCCCeeEC
Confidence 4569999875322222 11223688998886422 111 123556676664 477777765432 3322
Q ss_pred --cCCcCCcCeec
Q psy15692 156 --TGRPYHPACFT 166 (278)
Q Consensus 156 --~~~~~H~~Cf~ 166 (278)
=++.||..|+.
T Consensus 73 d~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 73 DTCDKGYHTFCLQ 85 (111)
T ss_dssp SSSCCEEEGGGSS
T ss_pred CCCCcHHhHHhcC
Confidence 34567777654
No 92
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.60 E-value=9.3 Score=24.81 Aligned_cols=45 Identities=18% Similarity=0.511 Sum_probs=28.9
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhcccC-----CCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA-----PRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~-----~~C~~C~~~I~~~ 211 (278)
+.|..|...+.. ...+ .=|..||..|..+.+. ..|..|+.+|...
T Consensus 21 ~~C~IC~~~~~~-~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQK-PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSS-EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCC-eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 567777666653 2222 4577888888766542 3688888887643
No 93
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=54.33 E-value=4.6 Score=26.87 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=25.7
Q ss_pred ccccccccCcccCCCCeEeeCCeecccccccccc----ccccccccccc
Q psy15692 105 SCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL----EKCSVCVKPIL 149 (278)
Q Consensus 105 ~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~----~~C~~C~~~I~ 149 (278)
+=|.|..|...+.. +....-|+.||..|..+.+ ..|..|++.+.
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34667777666543 3444567777777764322 34666666654
No 94
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.05 E-value=14 Score=23.97 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=28.0
Q ss_pred eecCCCCCCCCCCCCeEEcCCCcccchhhhhccc--CCCCcccCccccCC
Q psy15692 164 CFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF--APRCCVCRAPIMPD 211 (278)
Q Consensus 164 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~--~~~C~~C~~~I~~~ 211 (278)
-+.|..|...+.. ...+..=|..||..|..+.+ ...|..|+.+|...
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3566666665543 22222346778888765433 46788888887643
No 95
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.38 E-value=17 Score=23.91 Aligned_cols=41 Identities=27% Similarity=0.563 Sum_probs=21.6
Q ss_pred CCCcccCccccCCCCCCceeEEEcCCcccccCCcc--------cCCCCCCCCC
Q psy15692 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYR--------CEDCGLVLSS 243 (278)
Q Consensus 199 ~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~--------C~~C~~~l~~ 243 (278)
..|..|...+.... .+++..-++.||..|+. |..|...|..
T Consensus 16 ~~C~IC~~~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 16 LECPVCKEDYALGE----SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CCCTTTTSCCCTTS----CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCeeCCccccCCC----CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34666655554321 12223446666666653 6677666653
No 96
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.10 E-value=10 Score=24.14 Aligned_cols=45 Identities=20% Similarity=0.496 Sum_probs=28.6
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhccc---CCCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF---APRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~---~~~C~~C~~~I~~~ 211 (278)
+.|..|...+..... . .=|..||..|..+.+ ...|..|+.+|...
T Consensus 16 ~~C~IC~~~~~~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ-T-ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCCC-C-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCeeE-C-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 566777665543221 2 356778888876554 35788888888643
No 97
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=52.94 E-value=17 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCeEEcCCCcccchhhhhc---ccCCCCcccCcccc
Q psy15692 167 CVVCGKSLDGIPFTVDAANQIHCIQDFHK---KFAPRCCVCRAPIM 209 (278)
Q Consensus 167 C~~C~~~l~~~~~~~~~~~~~~C~~~y~~---~~~~~C~~C~~~I~ 209 (278)
|..|+.++.--.-.. .=+.++|.+|+.. +-...|..|..+|.
T Consensus 4 C~~C~~Pi~iygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp CTTTCSBCSEEEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred cCccCCCeEEEeeec-cccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 667777775322222 3457899999864 45678999999997
No 98
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.71 E-value=5.5 Score=29.16 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=32.3
Q ss_pred CcccchhhhhcccCCCCcccCccccCCCCCCceeEEEcCCcccccCCcccCCCCCCCCCCcCCCceeecCCccccccchh
Q psy15692 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNA 264 (278)
Q Consensus 185 ~~~~C~~~y~~~~~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~ 264 (278)
+.-+|..| ..|..|++.-.++. .+.-..-++.||..|..= +|.. +-.+.-+|..|..
T Consensus 51 ~~W~C~~C------~~C~~C~~~~~~~~----ll~Cd~C~~~yH~~Cl~p-----pl~~--------~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 51 YKWQCIEC------KSCILCGTSENDDQ----LLFCDDCDRGYHMYCLNP-----PVAE--------PPEGSWSCHLCWE 107 (114)
T ss_dssp TTCCCGGG------CCCTTTTCCTTTTT----EEECSSSCCEEETTTSSS-----CCSS--------CCSSCCCCHHHHH
T ss_pred CccCcccc------CccCcccccCCCCc----eEEcCCCCccccccccCC-----CccC--------CCCCCeECccccc
Confidence 44566666 35777776543221 111123356799887651 3332 1235678888876
Q ss_pred Hhh
Q psy15692 265 KRV 267 (278)
Q Consensus 265 ~~~ 267 (278)
...
T Consensus 108 ~~~ 110 (114)
T 2kwj_A 108 LLK 110 (114)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 99
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.30 E-value=5.8 Score=26.77 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=17.9
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCF 107 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 107 (278)
....|+.|...|..... ...-+..||..|+
T Consensus 14 ~i~~C~IC~~~i~~g~~-C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS-CETCGIRMHLPCV 43 (74)
T ss_dssp SSCBCSSSCCBCSSSEE-CSSSCCEECHHHH
T ss_pred CCCcCcchhhHcccCCc-cCCCCchhhHHHH
Confidence 45679999998874331 2233445565554
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=51.59 E-value=20 Score=21.57 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=4.6
Q ss_pred CCCcccCccc
Q psy15692 199 PRCCVCRAPI 208 (278)
Q Consensus 199 ~~C~~C~~~I 208 (278)
..|..|..+|
T Consensus 44 ~~CP~Cr~~~ 53 (55)
T 2ecm_A 44 YRCPLCSGPS 53 (55)
T ss_dssp CCCTTSCCSS
T ss_pred CcCCCCCCcC
Confidence 3444444444
No 101
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=51.26 E-value=5.9 Score=29.17 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=14.3
Q ss_pred ccccccCCCeeeCCcceee
Q psy15692 78 FGECCKCGERILGEGSGCT 96 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~ 96 (278)
...|.+|++.|..+++.|-
T Consensus 20 RA~Ck~Ck~kI~KgeLRiG 38 (114)
T 1v9x_A 20 RSSCKTCKSVINKENFRLG 38 (114)
T ss_dssp CCBCSSSCCBCCSSSEEEE
T ss_pred CCCchhhCCccCCCCEEEE
Confidence 3469999999987775543
No 102
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.02 E-value=20 Score=24.54 Aligned_cols=10 Identities=20% Similarity=0.550 Sum_probs=5.5
Q ss_pred ccccCCCeee
Q psy15692 80 ECCKCGERIL 89 (278)
Q Consensus 80 ~C~~C~~~I~ 89 (278)
.|..|+.+|.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 3666665553
No 103
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.42 E-value=5.9 Score=26.85 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCCcccCccccCCCCCCceeEEEcCCcccccCCcc--------cCCCCCCCC
Q psy15692 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYR--------CEDCGLVLS 242 (278)
Q Consensus 198 ~~~C~~C~~~I~~~~~~~~~~~v~~~~~~~H~~Cf~--------C~~C~~~l~ 242 (278)
...|..|.......+ ..+.+..-++.||..|.. |..|.+.+.
T Consensus 26 ~~~C~iC~~~~~~~~---~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQED---CVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTTT---CCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred hccCcccccccCCCc---eEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 344666655544332 122333478889988864 888888775
No 104
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=49.01 E-value=5.7 Score=28.78 Aligned_cols=31 Identities=35% Similarity=0.631 Sum_probs=20.6
Q ss_pred ccccccCCCeeeCCcceeeeC-------C---ccccccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAM-------D---KVYHISCFT 108 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~-------~---~~~H~~Cf~ 108 (278)
...|..|++.|.-+++.|-.. | .-||..||.
T Consensus 25 Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 25 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp CCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 446999999998777544321 1 256777765
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=48.90 E-value=14 Score=26.75 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=29.8
Q ss_pred CcccccccccccccCcccCCCCeEeeCCeeccccccccccccccccccccc--ccceEE--cCCcCCcCeec
Q psy15692 99 DKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPIL--DRILRA--TGRPYHPACFT 166 (278)
Q Consensus 99 ~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~~~C~~C~~~I~--~~~~~~--~~~~~H~~Cf~ 166 (278)
++.||..|+.=. ..+. -.+..+.-+|.+|. .|..|+..-. +.+|.- =++.||..|+.
T Consensus 33 ~~~~H~~Cl~~~---~~~~---~~~~~~~W~C~~C~-----~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 33 GNSGHPSCLKFS---PELT---VRVKALRWQCIECK-----TCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp CCEECHHHHTCC---HHHH---HHHHTSCCCCTTTC-----CBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred CCCCCCchhcCC---HHHH---HHhhccccccccCC-----ccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 567887765311 0000 01224556677664 4778876532 233332 34678888754
No 106
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=48.17 E-value=12 Score=25.62 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.8
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTCDH 111 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 111 (278)
....|.-|++.+.+..+ +..-...-|+-||-|+.
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHH
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccH
Confidence 34579999999998886 78888899999999974
No 107
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.08 E-value=15 Score=26.49 Aligned_cols=45 Identities=20% Similarity=0.439 Sum_probs=27.1
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhcccCCCCcccCccccC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMP 210 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~C~~~I~~ 210 (278)
+.|..|...+..- ..+..=|..||..|..+.+...|..|..++..
T Consensus 23 ~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 4566665555422 21113466777777766666778888888753
No 108
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=47.06 E-value=7.4 Score=28.72 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.0
Q ss_pred ccccccCCCeeeCCccee
Q psy15692 78 FGECCKCGERILGEGSGC 95 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~ 95 (278)
...|.+|++.|.-+++.|
T Consensus 15 RA~Ck~C~~kI~KgeLRi 32 (117)
T 1uw0_A 15 TAGCKKCKEKIVKGVCRI 32 (117)
T ss_dssp CEECTTSSCEECTTCEEE
T ss_pred CccchhhCcccCCCCeEE
Confidence 446999999998777544
No 109
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=45.71 E-value=15 Score=23.52 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=16.6
Q ss_pred CccccccCCCeeeCCcc-eeeeCCcccccccc
Q psy15692 77 LFGECCKCGERILGEGS-GCTAMDKVYHISCF 107 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~-~~~~~~~~~H~~Cf 107 (278)
....|.-|...+..... .+..-+..||..|+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 44 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCV 44 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHH
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHH
Confidence 34568888877654322 11223555665554
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=44.44 E-value=9.1 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=19.5
Q ss_pred ccccccCCCeeeCCcceeeeC---Cccccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAM---DKVYHISC 106 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~---~~~~H~~C 106 (278)
...|..|++++.++...|..+ .+-||..|
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 457999999987654435555 55677665
No 111
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.17 E-value=12 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=10.4
Q ss_pred Ceecccccccccccccccccccc
Q psy15692 126 GHAYCEQGYLDTLEKCSVCVKPI 148 (278)
Q Consensus 126 g~~yC~~~y~~~~~~C~~C~~~I 148 (278)
|+.||..|.......|..|++.+
T Consensus 25 gH~fC~~Ci~~~~~~CP~Cr~~~ 47 (56)
T 1bor_A 25 LHTLCSGCLEASGMQCPICQAPW 47 (56)
T ss_dssp SCCSBTTTCSSSSSSCSSCCSSS
T ss_pred CCcccHHHHccCCCCCCcCCcEe
Confidence 34445444433223455555544
No 112
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=43.74 E-value=11 Score=23.90 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=20.5
Q ss_pred cccccCcccCCCCeEeeCCeecc-ccccc
Q psy15692 108 TCDHCAVQLEGKPFYIIEGHAYC-EQGYL 135 (278)
Q Consensus 108 ~C~~C~~~l~~~~f~~~~g~~yC-~~~y~ 135 (278)
.|..|+..++...-+.++|+.|| +.|..
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~ 37 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACAD 37 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHH
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHc
Confidence 35678877777677888999998 55543
No 113
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.57 E-value=8 Score=25.18 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=6.8
Q ss_pred ccccccccccc
Q psy15692 139 EKCSVCVKPIL 149 (278)
Q Consensus 139 ~~C~~C~~~I~ 149 (278)
..|..|++.|.
T Consensus 50 ~~CP~Cr~~~~ 60 (71)
T 2d8t_A 50 KRCALCRQEIP 60 (71)
T ss_dssp SBCSSSCCBCC
T ss_pred CcCcCcCchhC
Confidence 45666666664
No 114
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=43.40 E-value=9.4 Score=22.67 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.5
Q ss_pred CCccccccCCCeeeCCcc
Q psy15692 76 DLFGECCKCGERILGEGS 93 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~ 93 (278)
...++|.+|++||.-..+
T Consensus 15 ~~YRvC~~CgkPi~lsAI 32 (44)
T 2lo3_A 15 IQYRVCEKCGKPLALTAI 32 (44)
T ss_dssp CCEEECTTTCCEEETTTH
T ss_pred ccchhhcccCCcchHHHH
Confidence 457899999999986653
No 115
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.77 E-value=6.2 Score=26.51 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=4.7
Q ss_pred ccccCCCee
Q psy15692 80 ECCKCGERI 88 (278)
Q Consensus 80 ~C~~C~~~I 88 (278)
.|..|...+
T Consensus 17 ~C~IC~~~~ 25 (81)
T 2csy_A 17 RCFICRQAF 25 (81)
T ss_dssp BCSSSCSBC
T ss_pred CCcCCCchh
Confidence 455555544
No 116
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=41.73 E-value=7.3 Score=28.51 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred ccccccCCCeeeCCcceeeeC---------C---ccccccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAM---------D---KVYHISCFT 108 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~---------~---~~~H~~Cf~ 108 (278)
...|.+|++.|..+++.|... | .-||..||.
T Consensus 19 Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~ 61 (111)
T 3odc_A 19 RSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 61 (111)
T ss_dssp CCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred CccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhcc
Confidence 456999999998776554321 2 246777776
No 117
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=41.62 E-value=5.6 Score=27.90 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=6.7
Q ss_pred ccccCCCeeeC
Q psy15692 80 ECCKCGERILG 90 (278)
Q Consensus 80 ~C~~C~~~I~~ 90 (278)
.|.-|...+..
T Consensus 24 ~C~IC~~~~~~ 34 (99)
T 2y43_A 24 RCGICFEYFNI 34 (99)
T ss_dssp BCTTTCSBCSS
T ss_pred CcccCChhhCC
Confidence 47777665543
No 118
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=41.16 E-value=7.3 Score=28.77 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=21.2
Q ss_pred CccccccCCCeeeCCcceeee-------CC---ccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTA-------MD---KVYHISCFT 108 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~-------~~---~~~H~~Cf~ 108 (278)
+...|..|++.|..+++.|-. .| .-||..||.
T Consensus 37 ~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~ 78 (116)
T 3od8_A 37 GRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 78 (116)
T ss_dssp SCCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHH
T ss_pred CCccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccCh
Confidence 345799999999877754422 12 236777775
No 119
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.10 E-value=23 Score=23.65 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=28.1
Q ss_pred ecCCCCCCCCCCCC--eEEcCCCcccchhhhhccc-----CCCCcccCccccC
Q psy15692 165 FTCVVCGKSLDGIP--FTVDAANQIHCIQDFHKKF-----APRCCVCRAPIMP 210 (278)
Q Consensus 165 f~C~~C~~~l~~~~--~~~~~~~~~~C~~~y~~~~-----~~~C~~C~~~I~~ 210 (278)
+.|..|...+.... .....=|..||..|..+.+ ...|..|.+++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 56777776665321 2222456788888875543 2568888887754
No 120
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=40.61 E-value=8 Score=24.78 Aligned_cols=10 Identities=30% Similarity=0.992 Sum_probs=4.7
Q ss_pred cccccccccc
Q psy15692 140 KCSVCVKPIL 149 (278)
Q Consensus 140 ~C~~C~~~I~ 149 (278)
.|..|+..|.
T Consensus 42 ~CP~Cr~~~~ 51 (68)
T 1chc_A 42 TCPLCKVPVE 51 (68)
T ss_dssp STTTTCCCCC
T ss_pred cCcCCChhhH
Confidence 4555554443
No 121
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=40.57 E-value=22 Score=23.84 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=27.2
Q ss_pred ecCCCCCCCCCC--CCeEEcCCCcccchhhhhccc---CCCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDG--IPFTVDAANQIHCIQDFHKKF---APRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~--~~~~~~~~~~~~C~~~y~~~~---~~~C~~C~~~I~~~ 211 (278)
+.|..|-.++.. ..+.--.=|..+|..|+.+.. ...|..|.+++...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456666666642 122100146678888876553 35688888887643
No 122
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.37 E-value=16 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.482 Sum_probs=12.9
Q ss_pred ccccCCCeeeCCcceeeeCCccccccc
Q psy15692 80 ECCKCGERILGEGSGCTAMDKVYHISC 106 (278)
Q Consensus 80 ~C~~C~~~I~~~~~~~~~~~~~~H~~C 106 (278)
.|.-|...+..... +..-|..|+..|
T Consensus 24 ~C~IC~~~~~~pv~-~~~CgH~fC~~C 49 (117)
T 1jm7_B 24 RCSRCTNILREPVC-LGGCEHIFCSNC 49 (117)
T ss_dssp SCSSSCSCCSSCBC-CCSSSCCBCTTT
T ss_pred CCCCCChHhhCccE-eCCCCCHHHHHH
Confidence 47777766544322 113344454444
No 123
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.06 E-value=25 Score=23.15 Aligned_cols=44 Identities=23% Similarity=0.524 Sum_probs=26.7
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhccc--------CCCCcccCccccC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF--------APRCCVCRAPIMP 210 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~--------~~~C~~C~~~I~~ 210 (278)
+.|..|...+..- ..+ .=|..||..|..+.+ ...|..|+.+|..
T Consensus 20 ~~C~IC~~~~~~p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5667776665432 222 346778888865432 4578888877764
No 124
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=39.25 E-value=6 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.507 Sum_probs=18.4
Q ss_pred ccccccCcccCCCCeEeeCCeecccccccc
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLD 136 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~ 136 (278)
.+|..|+.......-...+|+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 356666666654444556777777777643
No 125
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.14 E-value=9 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=9.7
Q ss_pred CCcccccCCc--------ccCCCCCCC
Q psy15692 223 LDRSFHIGCY--------RCEDCGLVL 241 (278)
Q Consensus 223 ~~~~~H~~Cf--------~C~~C~~~l 241 (278)
-++.||..|+ .|..|+..|
T Consensus 40 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 40 CGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp SSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 3455555554 355555554
No 126
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.79 E-value=18 Score=23.14 Aligned_cols=44 Identities=16% Similarity=0.389 Sum_probs=28.9
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhccc--CCCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF--APRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~--~~~C~~C~~~I~~~ 211 (278)
+.|..|...+.. ..+ .=|..||..|..+.+ ...|..|..+|...
T Consensus 16 ~~C~IC~~~~~~--~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 566777666655 333 456778888876543 35788888887654
No 127
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.11 E-value=12 Score=31.23 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=17.6
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCF 107 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 107 (278)
....|..|+..|..+.. ..--+..||..|+
T Consensus 179 ~i~~C~iC~~iv~~g~~-C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS-CETCGIRMHLPCV 208 (238)
T ss_dssp TCCBCTTTCSBCSSCEE-CSSSCCEECHHHH
T ss_pred CCCcCcchhhHHhCCcc-cCccChHHHHHHH
Confidence 36679999888774321 2223455665555
No 128
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=37.84 E-value=9.4 Score=28.65 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=5.7
Q ss_pred ccccccccccc
Q psy15692 139 EKCSVCVKPIL 149 (278)
Q Consensus 139 ~~C~~C~~~I~ 149 (278)
..|..|.+.|.
T Consensus 88 ~~CP~Cr~~~~ 98 (138)
T 4ayc_A 88 IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCCBCC
T ss_pred CcCCCCCCcCC
Confidence 34555555553
No 129
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=36.65 E-value=20 Score=25.74 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=16.3
Q ss_pred EEEcCCcccccCCc--------ccCCCCCCCC
Q psy15692 219 RVVALDRSFHIGCY--------RCEDCGLVLS 242 (278)
Q Consensus 219 ~v~~~~~~~H~~Cf--------~C~~C~~~l~ 242 (278)
++..-++.||..|. .|..|.+.+.
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 44456788887765 4777777654
No 130
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=36.26 E-value=23 Score=25.28 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=27.1
Q ss_pred eecCCCCCCCCCCCCeEEcCCCcccchhhhhccc---CCCCcccCcccc
Q psy15692 164 CFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF---APRCCVCRAPIM 209 (278)
Q Consensus 164 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~---~~~C~~C~~~I~ 209 (278)
-|.|..|...+.. ...+ .=|..||..|..+.+ ...|..|..+|.
T Consensus 15 ~~~C~iC~~~~~~-p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE-PVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS-CEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc-eeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3667777766643 2223 456778888876554 236777777664
No 131
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.23 E-value=37 Score=22.87 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=17.8
Q ss_pred ccccccCCCeeeCCcceeeeC-----Ccccccccc
Q psy15692 78 FGECCKCGERILGEGSGCTAM-----DKVYHISCF 107 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~~~~-----~~~~H~~Cf 107 (278)
...|.-|......+...+.-- ...||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 346999987665433322211 267888886
No 132
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=35.01 E-value=10 Score=24.45 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=4.8
Q ss_pred ccCCCCCCCC
Q psy15692 233 RCEDCGLVLS 242 (278)
Q Consensus 233 ~C~~C~~~l~ 242 (278)
.|..|...+.
T Consensus 53 ~CP~Cr~~~~ 62 (71)
T 3ng2_A 53 TCPTCRKKIN 62 (71)
T ss_dssp BCTTTCCBCC
T ss_pred CCCCCCCccC
Confidence 3555555444
No 133
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.45 E-value=23 Score=22.36 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=28.0
Q ss_pred ecCCCCCC-CCCCCC--eEEcCCCcccchhhhhccc---CCCCcccCccccCC
Q psy15692 165 FTCVVCGK-SLDGIP--FTVDAANQIHCIQDFHKKF---APRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~-~l~~~~--~~~~~~~~~~C~~~y~~~~---~~~C~~C~~~I~~~ 211 (278)
+.|..|.. .+.+.. .....=|..||..|..+.+ ...|..|+++|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 34666655 333221 1222457788888876552 35699999888754
No 134
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=34.26 E-value=13 Score=25.38 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=28.1
Q ss_pred cccccccccCcccCCCCeEeeCCeecccccccccc---ccccccccccc
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL---EKCSVCVKPIL 149 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~---~~C~~C~~~I~ 149 (278)
++=|.|..|...+.. +.....|..||..|..+-. ..|..|++++.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 456778888766644 4555578888877754322 45666666654
No 135
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=34.14 E-value=66 Score=19.07 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=5.0
Q ss_pred CCCcccCccc
Q psy15692 199 PRCCVCRAPI 208 (278)
Q Consensus 199 ~~C~~C~~~I 208 (278)
..|..|..+|
T Consensus 44 ~~CP~Cr~~~ 53 (55)
T 1iym_A 44 STCPLCRLTV 53 (55)
T ss_dssp CSCSSSCCCS
T ss_pred CcCcCCCCEe
Confidence 3455555544
No 136
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.99 E-value=32 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.563 Sum_probs=25.0
Q ss_pred cCCcCCcCeecCCCCCCC-CCCCCeEEc-CCCcccchhhhhc
Q psy15692 156 TGRPYHPACFTCVVCGKS-LDGIPFTVD-AANQIHCIQDFHK 195 (278)
Q Consensus 156 ~~~~~H~~Cf~C~~C~~~-l~~~~~~~~-~~~~~~C~~~y~~ 195 (278)
....+|+ ..|..|++. |.|..|.=. =.+--+|..||.+
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred cCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 4567787 889999974 777655321 1234578888865
No 137
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=33.87 E-value=17 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=20.7
Q ss_pred CccccccCCCeeeCCcceeeeCCcccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAMDKVYHISCFTC 109 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C 109 (278)
....|..|...-.+.-.-..+-++.||..||+=
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCcccCccccccccceeccccccccccHhhccc
Confidence 345698887533322222456788899888764
No 138
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=32.88 E-value=5.3 Score=25.17 Aligned_cols=24 Identities=42% Similarity=0.891 Sum_probs=10.3
Q ss_pred Ceecccccccccc---ccccccccccc
Q psy15692 126 GHAYCEQGYLDTL---EKCSVCVKPIL 149 (278)
Q Consensus 126 g~~yC~~~y~~~~---~~C~~C~~~I~ 149 (278)
|..||..|..+.. ..|..|++.|.
T Consensus 29 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 29 GHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 3444444443221 34555555443
No 139
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.44 E-value=25 Score=23.21 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=26.9
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhccc--------CCCCcccCccccC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF--------APRCCVCRAPIMP 210 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~--------~~~C~~C~~~I~~ 210 (278)
+.|..|...+... ... .=|..||..|..+.+ ...|..|+.+|..
T Consensus 20 ~~C~IC~~~~~~p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSC-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcc-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5677776666432 222 456778888875422 3467777777754
No 140
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=32.31 E-value=20 Score=25.32 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=28.2
Q ss_pred cccccccccCcccCCCCeEeeCCeeccccccccc---cccccccccccc
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDT---LEKCSVCVKPIL 149 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~---~~~C~~C~~~I~ 149 (278)
++=|.|..|...+.. +.....|..||..|-.+- ...|..|++++.
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 567788888766644 455567888888775432 245555555554
No 141
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=31.65 E-value=8.9 Score=27.32 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=10.7
Q ss_pred CCeecccccccccc---cccccccccc
Q psy15692 125 EGHAYCEQGYLDTL---EKCSVCVKPI 148 (278)
Q Consensus 125 ~g~~yC~~~y~~~~---~~C~~C~~~I 148 (278)
=|+.||..|....+ ..|..|+..|
T Consensus 34 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 34 CLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 34555555543221 3444444444
No 142
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=31.57 E-value=16 Score=25.71 Aligned_cols=45 Identities=7% Similarity=-0.044 Sum_probs=25.0
Q ss_pred cccccccccCcccCCCCeEeeCC-eeccccccccc---cccccccccccc
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEG-HAYCEQGYLDT---LEKCSVCVKPIL 149 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g-~~yC~~~y~~~---~~~C~~C~~~I~ 149 (278)
++=|.|..|...+.. +.....| ..||+.|..+- ...|..|++++.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 455667777665543 3445556 77777665432 234555555543
No 143
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=31.45 E-value=33 Score=23.92 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=9.0
Q ss_pred cCCCCcccCcccc
Q psy15692 197 FAPRCCVCRAPIM 209 (278)
Q Consensus 197 ~~~~C~~C~~~I~ 209 (278)
.++.|..|+..|-
T Consensus 15 ~~qiCqiCGD~VG 27 (93)
T 1weo_A 15 DGQFCEICGDQIG 27 (93)
T ss_dssp SSCBCSSSCCBCC
T ss_pred CCCccccccCccc
Confidence 3567888877774
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.00 E-value=19 Score=25.63 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=7.2
Q ss_pred cccccCCCeee
Q psy15692 79 GECCKCGERIL 89 (278)
Q Consensus 79 ~~C~~C~~~I~ 89 (278)
..|..|+.++.
T Consensus 33 ~~CP~Cq~eL~ 43 (101)
T 2jne_A 33 LHCPQCQHVLD 43 (101)
T ss_dssp CBCSSSCSBEE
T ss_pred ccCccCCCcce
Confidence 45777776653
No 145
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.54 E-value=51 Score=21.13 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=13.6
Q ss_pred Ccccchhhhhcc--cCCCCcccCcccc
Q psy15692 185 NQIHCIQDFHKK--FAPRCCVCRAPIM 209 (278)
Q Consensus 185 ~~~~C~~~y~~~--~~~~C~~C~~~I~ 209 (278)
+..||..|..+. ....|..|..+|.
T Consensus 37 ~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 37 KHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp TEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 455666665332 2345677766665
No 146
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.22 E-value=30 Score=24.34 Aligned_cols=45 Identities=18% Similarity=0.427 Sum_probs=25.6
Q ss_pred ecCCCCCCCCCCCCeEEcCCCcccchhhhhcccC-----CCCcccCccccCC
Q psy15692 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA-----PRCCVCRAPIMPD 211 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~-----~~C~~C~~~I~~~ 211 (278)
+.|..|...+..-.. . .=|..||..|..+.+. ..|..|..+|...
T Consensus 22 ~~C~IC~~~~~~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIKEPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCSSCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcccChhhcCeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 456666655543211 2 3466778888654432 3688887777643
No 147
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=30.04 E-value=42 Score=21.93 Aligned_cols=40 Identities=25% Similarity=0.500 Sum_probs=25.7
Q ss_pred cCCCCCCCCCCCCeEEcCCCcc-cchhhhhcccCCCCcccCcccc
Q psy15692 166 TCVVCGKSLDGIPFTVDAANQI-HCIQDFHKKFAPRCCVCRAPIM 209 (278)
Q Consensus 166 ~C~~C~~~l~~~~~~~~~~~~~-~C~~~y~~~~~~~C~~C~~~I~ 209 (278)
.|..|...+..-.+ + .=|.. +|..|..+. ..|..|..+|.
T Consensus 26 ~C~iC~~~~~~~~~-~-pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 26 LCKICMDRNIAIVF-V-PCGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp BCTTTSSSBCCEEE-E-TTCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred CCCCCCCCCCCEEE-c-CCCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 45566554443222 2 34566 888887665 78999999886
No 148
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.42 E-value=15 Score=27.82 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=13.9
Q ss_pred ccccccCCCeeeCCccee
Q psy15692 78 FGECCKCGERILGEGSGC 95 (278)
Q Consensus 78 ~~~C~~C~~~I~~~~~~~ 95 (278)
...|..|++.|.-+++.|
T Consensus 27 RA~CK~C~~kI~KgeLRI 44 (134)
T 2cs2_A 27 RSTCKGCMEKIEKGQVRL 44 (134)
T ss_dssp CCBCSSSCCBCCTTSEEE
T ss_pred CccchhcCCcccCCCeEE
Confidence 446999999998777544
No 149
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=29.27 E-value=23 Score=24.24 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=4.9
Q ss_pred CCcccccCCc
Q psy15692 223 LDRSFHIGCY 232 (278)
Q Consensus 223 ~~~~~H~~Cf 232 (278)
-++.||..|+
T Consensus 61 C~H~Fh~~Ci 70 (91)
T 2l0b_A 61 CHHYFHKPCV 70 (91)
T ss_dssp TTEEEEHHHH
T ss_pred CCChHHHHHH
Confidence 4455555443
No 150
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=29.26 E-value=31 Score=22.49 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=7.1
Q ss_pred CCcccchhhhhc
Q psy15692 184 ANQIHCIQDFHK 195 (278)
Q Consensus 184 ~~~~~C~~~y~~ 195 (278)
=|..||..|..+
T Consensus 30 CgH~fC~~Ci~~ 41 (79)
T 2egp_A 30 CGHSLCRACITV 41 (79)
T ss_dssp SSCCCCHHHHSC
T ss_pred CCCHHHHHHHHH
Confidence 355667766654
No 151
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.06 E-value=13 Score=24.74 Aligned_cols=33 Identities=36% Similarity=0.637 Sum_probs=19.4
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchh-Hhhhhccc
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNA-KRVQALTS 272 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~-~~~~~~~~ 272 (278)
|.|..|+..+... ..+.+.|+.|.. ...+..++
T Consensus 29 Y~C~~CG~~~e~~--------~~d~irCp~CG~RILyK~R~~ 62 (70)
T 1twf_L 29 YICAECSSKLSLS--------RTDAVRCKDCGHRILLKARTK 62 (70)
T ss_dssp EECSSSCCEECCC--------TTSTTCCSSSCCCCCBCCCCS
T ss_pred EECCCCCCcceeC--------CCCCccCCCCCceEeEecCCC
Confidence 5788887775421 235677888876 33444443
No 152
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=28.76 E-value=50 Score=21.39 Aligned_cols=44 Identities=11% Similarity=0.418 Sum_probs=26.0
Q ss_pred ecCCCCCCCCCCCCeEEcC-CCcccchhhhhcccC----CCCcccCccccC
Q psy15692 165 FTCVVCGKSLDGIPFTVDA-ANQIHCIQDFHKKFA----PRCCVCRAPIMP 210 (278)
Q Consensus 165 f~C~~C~~~l~~~~~~~~~-~~~~~C~~~y~~~~~----~~C~~C~~~I~~ 210 (278)
+.|..|...+.. ...+ . =|..||..|..+.+. ..|..|+.++..
T Consensus 16 ~~C~IC~~~~~~-p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTT-CEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhC-CeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 566677666553 2222 3 367788877654432 468888777543
No 153
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.61 E-value=11 Score=26.50 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=7.1
Q ss_pred ecCCCCCCCCC
Q psy15692 165 FTCVVCGKSLD 175 (278)
Q Consensus 165 f~C~~C~~~l~ 175 (278)
|.|..|++.+.
T Consensus 81 ~~C~~C~k~f~ 91 (115)
T 2dmi_A 81 LKCMYCGHSFE 91 (115)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCCccC
Confidence 66777766554
No 154
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.32 E-value=35 Score=22.12 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=4.9
Q ss_pred CCcccCcccc
Q psy15692 200 RCCVCRAPIM 209 (278)
Q Consensus 200 ~C~~C~~~I~ 209 (278)
.|..|..+|.
T Consensus 62 ~CP~Cr~~~~ 71 (75)
T 1x4j_A 62 TCPICRADSG 71 (75)
T ss_dssp SCTTTCCCCC
T ss_pred cCcCcCCcCC
Confidence 4555555444
No 155
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.10 E-value=47 Score=21.65 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=25.9
Q ss_pred cCCCCCCCCCCCCeEEcCCCcc-cchhhhhcccCCCCcccCccccC
Q psy15692 166 TCVVCGKSLDGIPFTVDAANQI-HCIQDFHKKFAPRCCVCRAPIMP 210 (278)
Q Consensus 166 ~C~~C~~~l~~~~~~~~~~~~~-~C~~~y~~~~~~~C~~C~~~I~~ 210 (278)
.|..|...+..-.+ + .=|.. +|..|..+. ..|..|..+|..
T Consensus 27 ~C~IC~~~~~~~~~-~-pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIVF-V-PCGHLVTCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBCC-S-SSCCCCBCHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEEE-e-cCCCHHHHHHHhhCC--CCCccCCceecC
Confidence 45566555443222 1 34556 898887653 789999999864
No 156
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=27.06 E-value=20 Score=25.89 Aligned_cols=42 Identities=24% Similarity=0.594 Sum_probs=21.1
Q ss_pred ccccccCcccCCCCeEeeCCeecccccccccc----ccccccccccc
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL----EKCSVCVKPIL 149 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~----~~C~~C~~~I~ 149 (278)
|.|..|...+.. +....=|..||..|..+.+ ..|..|+..|.
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 445555544432 1223345666776665432 25666665554
No 157
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.04 E-value=50 Score=20.41 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=24.7
Q ss_pred CcccCCCCCCCCCCcCCCceeecCCccccccchhHhhhh
Q psy15692 231 CYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 231 Cf~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~ 269 (278)
=+.|..|...+.. .....-|+.+|..|..+.++.
T Consensus 20 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 20 EVICPICLDILQK-----PVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHH
T ss_pred CCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHc
Confidence 3678888877753 233456889999999888764
No 158
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.91 E-value=45 Score=20.09 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=22.6
Q ss_pred cccCCCCCCCCCCcCCCceeecCCccccccchhHhhhh
Q psy15692 232 YRCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 269 (278)
Q Consensus 232 f~C~~C~~~l~~~~~g~~~~~~~~~~~C~~C~~~~~~~ 269 (278)
+.|..|...+... ....-++.+|..|..+.+..
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~ 48 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRWWED 48 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTTS
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHHHHh
Confidence 5677887777532 23446788899998887654
No 159
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.63 E-value=27 Score=16.65 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=9.6
Q ss_pred cccCCCCCCCCC
Q psy15692 232 YRCEDCGLVLSS 243 (278)
Q Consensus 232 f~C~~C~~~l~~ 243 (278)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 678999988863
No 160
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=26.53 E-value=18 Score=29.36 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=22.7
Q ss_pred eecCCCCCCCCCCCCeEEcCCCcccchhhhhc
Q psy15692 164 CFTCVVCGKSLDGIPFTVDAANQIHCIQDFHK 195 (278)
Q Consensus 164 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 195 (278)
=..|..|+.......-.+ .+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~-~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKL-LNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEE-ETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceee-eCCcEEChhhhcc
Confidence 467999998776443333 5789999999865
No 161
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=26.45 E-value=43 Score=21.47 Aligned_cols=25 Identities=28% Similarity=0.789 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCCcCCCceeecCC--ccccc
Q psy15692 233 RCEDCGLVLSSEAEGRGCYPLDD--HVLCK 260 (278)
Q Consensus 233 ~C~~C~~~l~~~~~g~~~~~~~~--~~~C~ 260 (278)
.|+.|+++|.. |...|...+ +++|.
T Consensus 22 ~C~~CKk~lqK---GQtAyqrkGs~~LFCS 48 (62)
T 2das_A 22 TCANCKKPLQK---GQTAYQRKGSAHLFCS 48 (62)
T ss_dssp BCTTTCCBCCT---TSCCEECTTCCCEESS
T ss_pred Chhhccchhhc---CceeeeecCchhheec
Confidence 45556666652 444454433 44543
No 162
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=25.74 E-value=21 Score=27.52 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=29.3
Q ss_pred cccccccCcccCCCCeEeeCCeecccccccccc----cccccccccccc
Q psy15692 106 CFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL----EKCSVCVKPILD 150 (278)
Q Consensus 106 Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~----~~C~~C~~~I~~ 150 (278)
=|.|..|...+.. +....-|..||..|..+.+ ..|..|+..|..
T Consensus 18 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3567777766654 2445567888888876543 378888887753
No 163
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.43 E-value=45 Score=22.95 Aligned_cols=35 Identities=6% Similarity=0.079 Sum_probs=26.2
Q ss_pred CcccCCCCCCCCCCcCCCceee-cCCccccccchhHhhhhc
Q psy15692 231 CYRCEDCGLVLSSEAEGRGCYP-LDDHVLCKSCNAKRVQAL 270 (278)
Q Consensus 231 Cf~C~~C~~~l~~~~~g~~~~~-~~~~~~C~~C~~~~~~~~ 270 (278)
=|.|..|...+.. .... ..|+.||+.|-.+.+...
T Consensus 7 ~~~CPI~~~~~~d-----PV~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 7 GFTCPITKEEMKK-----PVKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp CCBCTTTCSBCSS-----EEEESSSCCEEEHHHHHHHHHHH
T ss_pred EeECcCcCchhcC-----CEEcCCCCCeecHHHHHHHHHHc
Confidence 4789999888863 3444 479999999998877653
No 164
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=24.85 E-value=45 Score=25.50 Aligned_cols=27 Identities=15% Similarity=0.408 Sum_probs=17.7
Q ss_pred CCcccchhhhhccc---CCCCcccCccccC
Q psy15692 184 ANQIHCIQDFHKKF---APRCCVCRAPIMP 210 (278)
Q Consensus 184 ~~~~~C~~~y~~~~---~~~C~~C~~~I~~ 210 (278)
=|..||..|..+.+ ...|..|..+|..
T Consensus 73 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 73 CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 35667777765443 3468888888753
No 165
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.51 E-value=29 Score=16.74 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.8
Q ss_pred cccCCCCCCCCC
Q psy15692 232 YRCEDCGLVLSS 243 (278)
Q Consensus 232 f~C~~C~~~l~~ 243 (278)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 789999988864
No 166
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.91 E-value=28 Score=21.67 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=5.6
Q ss_pred ccccCCCeeeC
Q psy15692 80 ECCKCGERILG 90 (278)
Q Consensus 80 ~C~~C~~~I~~ 90 (278)
.|..|++....
T Consensus 20 ~C~~C~k~f~~ 30 (73)
T 2ctu_A 20 KCSKCGIIFIR 30 (73)
T ss_dssp ECSSSCCEEEC
T ss_pred eCCcccchhCC
Confidence 45555555443
No 167
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=23.71 E-value=17 Score=25.49 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=5.6
Q ss_pred ccccCCCeee
Q psy15692 80 ECCKCGERIL 89 (278)
Q Consensus 80 ~C~~C~~~I~ 89 (278)
.|.-|...+.
T Consensus 24 ~C~IC~~~~~ 33 (100)
T 3lrq_A 24 RCFICMEKLR 33 (100)
T ss_dssp BCTTTCSBCS
T ss_pred CCccCCcccc
Confidence 4666655543
No 168
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.47 E-value=37 Score=16.19 Aligned_cols=12 Identities=17% Similarity=0.634 Sum_probs=9.7
Q ss_pred cccCCCCCCCCC
Q psy15692 232 YRCEDCGLVLSS 243 (278)
Q Consensus 232 f~C~~C~~~l~~ 243 (278)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 679999988864
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=22.30 E-value=37 Score=28.08 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=29.9
Q ss_pred cccccccccCcccCCCCeEeeCCeecccccccccc----ccccccccccc
Q psy15692 104 ISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL----EKCSVCVKPIL 149 (278)
Q Consensus 104 ~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~----~~C~~C~~~I~ 149 (278)
+.-|.|..|...+.. +.....|+.||..|..+-. ..|..|++++.
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 456778888776653 4555678889988865432 23777777765
No 170
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=22.12 E-value=72 Score=20.08 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=28.9
Q ss_pred CcccCCCCCCCCCCcCCCceee-cCCccccccchhHhhhhc-ccCCcc
Q psy15692 231 CYRCEDCGLVLSSEAEGRGCYP-LDDHVLCKSCNAKRVQAL-TSTMVT 276 (278)
Q Consensus 231 Cf~C~~C~~~l~~~~~g~~~~~-~~~~~~C~~C~~~~~~~~-~~~~~~ 276 (278)
-|.|..+...+.. .... ..|..|++.+-.+.+... +.|++.
T Consensus 3 ~~~CpIs~~~m~d-----PV~~~~sG~~yer~~I~~~l~~~~~cP~t~ 45 (61)
T 2bay_A 3 HMLCAISGKVPRR-----PVLSPKSRTIFEKSLLEQYVKDTGNDPITN 45 (61)
T ss_dssp -CCCTTTCSCCSS-----EEEETTTTEEEEHHHHHHHHHHHSBCTTTC
T ss_pred eEEecCCCCCCCC-----CEEeCCCCcEEcHHHHHHHHHhCCCCcCCc
Confidence 3788888888863 3455 689999999998887543 456654
No 171
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=21.94 E-value=23 Score=25.39 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=13.1
Q ss_pred CCeecccccccccc----ccccccccccc
Q psy15692 125 EGHAYCEQGYLDTL----EKCSVCVKPIL 149 (278)
Q Consensus 125 ~g~~yC~~~y~~~~----~~C~~C~~~I~ 149 (278)
=|..||..|..+.. ..|..|+..|.
T Consensus 41 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 41 CKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 35556666654322 34666666554
No 172
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.75 E-value=36 Score=16.61 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.9
Q ss_pred cccCCCCCCCCC
Q psy15692 232 YRCEDCGLVLSS 243 (278)
Q Consensus 232 f~C~~C~~~l~~ 243 (278)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 789999988864
No 173
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=21.05 E-value=20 Score=29.53 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=0.0
Q ss_pred CccccccCCCeeeCCcceeeeC------------Ccccccccccc
Q psy15692 77 LFGECCKCGERILGEGSGCTAM------------DKVYHISCFTC 109 (278)
Q Consensus 77 ~~~~C~~C~~~I~~~~~~~~~~------------~~~~H~~Cf~C 109 (278)
+...|.+|++.|.-+++.|... ..-||..||.=
T Consensus 142 ~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf~~ 186 (223)
T 4av1_A 142 NRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVK 186 (223)
T ss_dssp ---------------------------------------------
T ss_pred CCccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhhhc
Confidence 4568999999998666544221 12468888754
No 174
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.47 E-value=41 Score=16.17 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=9.8
Q ss_pred cccCCCCCCCCC
Q psy15692 232 YRCEDCGLVLSS 243 (278)
Q Consensus 232 f~C~~C~~~l~~ 243 (278)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 689999998864
No 175
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=20.40 E-value=17 Score=27.49 Aligned_cols=41 Identities=32% Similarity=0.716 Sum_probs=23.3
Q ss_pred ccccccCcccCCCCeEeeCCeecccccccccc----cccccccccc
Q psy15692 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL----EKCSVCVKPI 148 (278)
Q Consensus 107 f~C~~C~~~l~~~~f~~~~g~~yC~~~y~~~~----~~C~~C~~~I 148 (278)
|.|..|...+.. +....=|..||..|..+.. ..|..|...|
T Consensus 32 ~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 445555554432 2333446677777765432 4788888865
No 176
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=20.17 E-value=29 Score=34.10 Aligned_cols=84 Identities=26% Similarity=0.530 Sum_probs=59.8
Q ss_pred CCccccccCCCeeeCCcceeeeCCcccccccccccccCcccCCCCeEeeCCeeccccccc-ccccccccccccccccceE
Q psy15692 76 DLFGECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYL-DTLEKCSVCVKPILDRILR 154 (278)
Q Consensus 76 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~ 154 (278)
....+|..|-++|.+.. ++.|+--=..|+.||- .|-+....||=+.... ..|+.|..|.+.-.+
T Consensus 104 pD~a~C~~Cl~e~~dp~------~rry~ypF~nCt~CGP-----R~tii~~lPYDR~~TsM~~F~mC~~C~~EY~d---- 168 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPT------NKRYMYPFIVCTNCGP-----RFTIIEDLPYDRENTTMKEFPMCDFCRSEYED---- 168 (772)
T ss_dssp CCCCCCHHHHHHHSSTT------STTTTCTTCCCTTSSC-----CGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHC----
T ss_pred CchhhhHHHHHHhcCCC------CCccCCccccCCCCCc-----hhhhhhcCCCCCCCCcCCCCCCChhHHHHhCC----
Confidence 45678999988876432 5666655557888864 4555666776554443 345889999876554
Q ss_pred EcCCcCCcCeecCCCCCCCC
Q psy15692 155 ATGRPYHPACFTCVVCGKSL 174 (278)
Q Consensus 155 ~~~~~~H~~Cf~C~~C~~~l 174 (278)
-.++.||.+=-.|..|+..|
T Consensus 169 p~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 169 PLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp SSSTTTTCTTCCCTTTSCCE
T ss_pred CCCCCCcCCCCCCccCCceE
Confidence 35899999999999999976
Done!