RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15692
(278 letters)
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 108 bits (270), Expect = 3e-29
Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 13/162 (8%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C C + IL A+D+ +H C C C V L + + YC+ +
Sbjct: 9 CAGCDQHILDRFI-LKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDFFKRFGT 66
Query: 140 KCSVCVK--PILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDFHKK 196
KC+ C P + RA YH CF CVVC + L G F + +++ C D+
Sbjct: 67 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126
Query: 197 FAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCG 238
+VA H G +
Sbjct: 127 KQGGSGGSGGSGGGTP-------MVAASPERHDGGLQANPVE 161
Score = 90.7 bits (225), Expect = 1e-22
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 140 KCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198
C+ C + ILDR IL+A R +H C C C L F+ ++C DF K+F
Sbjct: 8 MCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRG--ESVYCKDDFFKRFG 65
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
+C C+ I P A D +H+ C+ C C L++ E D ++
Sbjct: 66 TKCAACQLGIPPTQV-----VRRAQDFVYHLHCFACVVCKRQLATGDE--FYLMEDSRLV 118
Query: 259 CKSC 262
CK+
Sbjct: 119 CKAD 122
Score = 70.3 bits (172), Expect = 5e-15
Identities = 24/101 (23%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 77 LFGECC-KCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIE-GHAYCEQG 133
FG C C I A D VYH+ CF C C QL G FY++E C+
Sbjct: 63 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 122
Query: 134 YLDTLE-KCSVCVKPILDRILRATGRPYHPACFTCVVCGKS 173
Y + + A H
Sbjct: 123 YETAKQGGSGGSGGSGGGTPMVAASPERHDGGLQANPVEVQ 163
Score = 42.5 bits (100), Expect = 3e-05
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
P C C I D + + ALDR +H C +C DC + L+ C+ + V
Sbjct: 7 PMCAGCDQHI-----LDRFI-LKALDRHWHSKCLKCSDCHVPLAER-----CFSRGESVY 55
Query: 259 CKSC 262
CK
Sbjct: 56 CKDD 59
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 106 bits (265), Expect = 3e-28
Identities = 32/186 (17%), Positives = 48/186 (25%), Gaps = 22/186 (11%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEK 140
C C + + +H SCF C C L+ + YC+
Sbjct: 10 CGVCQKAVYF-AEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKS-------- 60
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR 200
C + G + N +
Sbjct: 61 ---CYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG 117
Query: 201 CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCK 260
C C + +V+ +S+H C+RC CG L S D + CK
Sbjct: 118 CPRCGQAVYA------AEKVIGAGKSWHKSCFRCAKCGKSLEST----TLADKDGEIYCK 167
Query: 261 SCNAKR 266
C AK
Sbjct: 168 GCYAKN 173
Score = 67.7 bits (165), Expect = 5e-14
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 2/125 (1%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEK 140
C C + G M + EG+ +A + +
Sbjct: 58 CKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG 117
Query: 141 CSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
C C + + + G+ +H +CF C CGKSL+ D +I+C + K F P
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA-DKDGEIYCKGCYAKNFGP 176
Query: 200 RCCVC 204
+
Sbjct: 177 KGFGF 181
Score = 42.3 bits (99), Expect = 4e-05
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257
+C VC+ + V SFH C+ C C L S D +
Sbjct: 7 GKKCGVCQKAVYF------AEEVQCEGSSFHKSCFLCMVCKKNLDST----TVAVHGDEI 56
Query: 258 LCKSCNAKR 266
CKSC K+
Sbjct: 57 YCKSCYGKK 65
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 102 bits (255), Expect = 2e-27
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C C E I A ++ +H+ F C C L G+ + ++ C+ Y+
Sbjct: 6 CAGCDELIFS-NEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV 64
Query: 140 KCSVCVKPIL--DRILRATGRPYHPA--CFTCVVCGKSLDGIPFTVDAANQIHCIQDFHK 195
C C I + + +H + CF C C K L G F + C + K
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV-EGMVFCSVECKK 123
Query: 196 KFA 198
+ +
Sbjct: 124 RMS 126
Score = 94.0 bits (234), Expect = 2e-24
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 140 KCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198
+C+ C + I +A + +H F C C L G + + ++ C + K A
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVN-DKPVCKPCYVKNHA 63
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFH--IGCYRCEDCGLVLSSEAEGRGCYPLDDH 256
C C I P+ RV + S+H C+ C C L G+ P++
Sbjct: 64 VVCQGCHNAIDPE-----VQRVTYNNFSWHASTECFLCSCCSKCL----IGQKFMPVEGM 114
Query: 257 VLCKSCNAKRV 267
V C KR+
Sbjct: 115 VFCSVECKKRM 125
Score = 43.5 bits (103), Expect = 7e-06
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
PRC C I + A ++++H+ + C DC +L+ G ++D +
Sbjct: 4 PRCAGCDELIFSNEY------TQAENQNWHLKHFCCFDCDSILA----GEIYVMVNDKPV 53
Query: 259 CKSC 262
CK C
Sbjct: 54 CKPC 57
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 97.5 bits (243), Expect = 1e-25
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL--EGKPFYIIEGHAYCEQGYLD-- 136
C C + I A+D+ +H C +CD C +L G+ Y G C + YL
Sbjct: 5 CGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
Query: 137 -TLEKCSVCVKPI--LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDF 193
C+ C K I + +R + YH CF C C K + + I C QD
Sbjct: 64 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123
Query: 194 HK 195
++
Sbjct: 124 YE 125
Score = 84.8 bits (210), Expect = 8e-21
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFT-VDAANQIHCIQDFH 194
+L C C + I DR L+A + +H C +C +CG L + + C +D+
Sbjct: 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 60
Query: 195 KKFAPR--CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYP 252
+ F C C I + T+R D+ +H+ C++C C G
Sbjct: 61 RLFGQDGLCASCDKRIRAY---EMTMR--VKDKVYHLECFKCAACQKHFC---VGDRYLL 112
Query: 253 LDDHVLCKSC 262
++ ++C+
Sbjct: 113 INSDIVCEQD 122
Score = 55.1 bits (133), Expect = 6e-10
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQGYLDT 137
G C C +RI DKVYH+ CF C C G + +I CEQ +
Sbjct: 67 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW 126
Query: 138 LEKC 141
+
Sbjct: 127 TKIN 130
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 98.1 bits (244), Expect = 3e-25
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 11/160 (6%)
Query: 105 SCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDT-LEKCSVCVKPILDR-ILRATGRPYHP 162
T G + C+ C + ILDR IL+A R +H
Sbjct: 26 RLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHS 85
Query: 163 ACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVA 222
C C C L F+ ++C DF K+F +C C+ I P V A
Sbjct: 86 KCLKCSDCHVPLAERCFSRG--ESVYCKDDFFKRFGTKCAACQLGIPPT-----QVVRRA 138
Query: 223 LDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVLCKSC 262
D +H+ C+ C C L++ E D ++CK+
Sbjct: 139 QDFVYHLHCFACVVCKRQLATGDE--FYLMEDSRLVCKAD 176
Score = 86.9 bits (215), Expect = 4e-21
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C C + IL A+D+ +H C C C V L + + YC+ +
Sbjct: 63 CAGCDQHILDRFI-LKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDFFKRFGT 120
Query: 140 KCSVCVKPI--LDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDFHKK 196
KC+ C I + RA YH CF CVVC + L G F + +++ C D+
Sbjct: 121 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180
Score = 47.6 bits (113), Expect = 7e-07
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 77 LFGECC-KCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIE-GHAYCEQG 133
FG C C I A D VYH+ CF C C QL G FY++E C+
Sbjct: 117 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 176
Query: 134 Y 134
Y
Sbjct: 177 Y 177
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 95.2 bits (237), Expect = 3e-25
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C +C + I + ++ +H +CF C C L + F + C +
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 140 KCSVCVKPIL--DRILRATGRPYHPACFTCVVCG 171
KC C K I+ D+ + G +H CF+ G
Sbjct: 68 KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101
Score = 82.8 bits (205), Expect = 2e-20
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 140 KCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
C C KPI + + R +H CF C C L F N+I C + ++
Sbjct: 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAK-DNKILCNKCTTRED 65
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCG 238
+P+C C I+ + V +H C+ G
Sbjct: 66 SPKCKGCFKAIVAGDQ-----NVEYKGTVWHKDCFSGPSSG 101
Score = 50.1 bits (120), Expect = 2e-08
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ C CR PI DS+ V +R +H C+RC C L+ D+
Sbjct: 3 SGSSGCVECRKPIGADSK-----EVHYKNRFWHDTCFRCAKCLHPLA----NETFVAKDN 53
Query: 256 HVLCKSC 262
+LC C
Sbjct: 54 KILCNKC 60
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 94.0 bits (234), Expect = 6e-25
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 131 EQGYLDTLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCI 190
E Y+ TLEKC+ C +PILDRILRA G+ YHP CFTCVVC + LDGIPFTVDA +QIHCI
Sbjct: 8 EGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCI 67
Query: 191 QDFHKKFAPRCC 202
+DFH+KFA
Sbjct: 68 EDFHRKFASGPS 79
Score = 53.9 bits (130), Expect = 5e-10
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYII-EGHAYCEQGY 134
C C + IL AM K YH CFTC C L+G PF + +C + +
Sbjct: 18 CATCSQPILDRI--LRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70
Score = 48.1 bits (115), Expect = 7e-08
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 10/76 (13%)
Query: 191 QDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGC 250
+ + +C C PI+ + A+ +++H GC+ C C L
Sbjct: 8 EGCYVATLEKCATCSQPILDRI-------LRAMGKAYHPGCFTCVVCHRGLDGI---PFT 57
Query: 251 YPLDDHVLCKSCNAKR 266
+ C ++
Sbjct: 58 VDATSQIHCIEDFHRK 73
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 95.5 bits (237), Expect = 3e-24
Identities = 36/147 (24%), Positives = 46/147 (31%), Gaps = 8/147 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL--EGKPFYIIEGHAYCEQGYLDTL 138
C CG +I AMD +H C C C QL G Y G C Y+
Sbjct: 8 CAGCGGKIADRFL-LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Query: 139 E---KCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDF 193
CS C + I + ++RA G YH CFTC C L + C D
Sbjct: 67 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 126
Query: 194 HKKFAPRCCVCRAPIMPDSEQDETVRV 220
+ + V
Sbjct: 127 PTALINGHLNSGGSGGSGGSGGDVMVV 153
Score = 76.6 bits (188), Expect = 3e-17
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFT-VDAANQIHCIQDFH 194
+ ++C+ C I DR +L A +H C C C L I + + I C D+
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 195 KKF--APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYP 252
+ F + C C I E V A +H+ C+ C C L G +
Sbjct: 64 RLFGNSGACSACGQSIPAS----ELVMR-AQGNVYHLKCFTCSTCRNRLV---PGDRFHY 115
Query: 253 LDDHVLCKSC 262
++ + C+
Sbjct: 116 INGSLFCEHD 125
Score = 54.6 bits (131), Expect = 3e-09
Identities = 24/92 (26%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQGYLDT 137
G C CG+ I A VYH+ CFTC C +L G F+ I G +CE
Sbjct: 70 GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129
Query: 138 LE-KCSVCVKPI----LDRILRATGRPYHPAC 164
L + G P
Sbjct: 130 LINGHLNSGGSGGSGGSGGDVMVVGEPTLMGG 161
Score = 43.1 bits (101), Expect = 3e-05
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 197 FAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDH 256
RC C I D + + A+D +H C +C C L G Y
Sbjct: 4 SWKRCAGCGGKIA-----DRFL-LYAMDSYWHSRCLKCSSCQAQLGD--IGTSSYTKSGM 55
Query: 257 VLCKSCNAKR 266
+LC++ +
Sbjct: 56 ILCRNDYIRL 65
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 86.0 bits (213), Expect = 6e-22
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138
C CGE ++G+G+G A+D+V+H+ CF C C QL G+ FY +E AYCE Y+ TL
Sbjct: 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65
Query: 139 EKCSVC 144
E
Sbjct: 66 ESGPSS 71
Score = 56.3 bits (136), Expect = 7e-11
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 137 TLEKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFH 194
C C + ++ + A R +H CF C C L G F + +C +
Sbjct: 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAV-ERRAYCEGCYV 62
Query: 195 KKFAPRCCVC 204
Sbjct: 63 ATLE-SGPSS 71
Score = 44.4 bits (105), Expect = 1e-06
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257
+ C C ++ D VVALDR FH+GC+ C C L G+ Y ++
Sbjct: 5 SSGCGGCGEDVVGDG-----AGVVALDRVFHVGCFVCSTCRAQLR----GQHFYAVERRA 55
Query: 258 LCKSC 262
C+ C
Sbjct: 56 YCEGC 60
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 79.4 bits (196), Expect = 3e-19
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 120 PFYIIEGHAYCEQGYLDTLEK--CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGI 177
+ + C+ C + I L A G+ +HP F C C ++ I
Sbjct: 5 SSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYI 64
Query: 178 PFTVDAANQIHCIQDFHKKFAPRCC 202
F V+ ++C + K FA
Sbjct: 65 GF-VEEKGALYCELCYEKFFASGPS 88
Score = 60.1 bits (146), Expect = 4e-12
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C + I G A+ K +H F C HC + F +G YCE Y
Sbjct: 28 CAHCNQVIRGPF--LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCY 79
Score = 42.4 bits (100), Expect = 9e-06
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 182 DAANQIHCIQDFH-KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLV 240
D + + K P C C I +VAL +S+H + C C
Sbjct: 8 DQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPF-------LVALGKSWHPEEFNCAHCKNT 60
Query: 241 LSSEAEGRGCYPLDDHVLCKSCNAKR 266
++ G + C+ C K
Sbjct: 61 MA----YIGFVEEKGALYCELCYEKF 82
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 76.6 bits (189), Expect = 2e-18
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 126 GHAYCEQGYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAA 184
Y + +C+ C K + + +P+H C C C L G FT
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSR-D 60
Query: 185 NQIHCIQDFHKKFAPRC 201
+C+ F + FA
Sbjct: 61 EDPYCVACFGELFASGP 77
Score = 58.1 bits (141), Expect = 2e-11
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C + + G T D+ +H C C C L G+ F + YC +
Sbjct: 18 CARCSKTLTQGG--VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACF 69
Score = 51.9 bits (125), Expect = 3e-09
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
+ + KFAPRC C + V D+ +H C C C L+
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGG-------VTYRDQPWHRECLVCTGCQTPLA-- 52
Query: 245 AEGRGCYPLDDHVLCKSC 262
G+ D+ C +C
Sbjct: 53 --GQQFTSRDEDPYCVAC 68
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 76.3 bits (188), Expect = 3e-18
Identities = 17/65 (26%), Positives = 23/65 (35%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138
C +C + ++YH CF C C Q FY EG YCE +
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Query: 139 EKCSV 143
C +
Sbjct: 72 APCWI 76
Score = 58.2 bits (141), Expect = 1e-11
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 130 CEQGYLD-TLEKCSVCVKPI--LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQ 186
E C C ++I+ + G YH CF C C + F +
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEF-EGR 60
Query: 187 IHCIQDFHKKFAPRCCV 203
+C DF FAP C +
Sbjct: 61 KYCEHDFQMLFAP-CWI 76
Score = 45.1 bits (107), Expect = 8e-07
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 9/74 (12%)
Query: 189 CIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGR 248
+ + C C+ P + V + +H C+ C C
Sbjct: 2 SEFMANALASATCERCKGGFAPAEK-----IVNSNGELYHEQCFVCAQCFQQF----PEG 52
Query: 249 GCYPLDDHVLCKSC 262
Y + C+
Sbjct: 53 LFYEFEGRKYCEHD 66
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 73.9 bits (182), Expect = 2e-17
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 126 GHAYCEQGYLDTLE-KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAA 184
+ +L KC C +P+L+ L A +HP CF C C S F
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFEL-D 60
Query: 185 NQIHCIQDFHKKFAPRCC 202
+ C +H +
Sbjct: 61 GRPFCELHYHHRRGSGPS 78
Score = 59.7 bits (145), Expect = 4e-12
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C +L +AMD V+H CF C C F+ ++G +CE Y
Sbjct: 18 CGGCNRPVLENY--LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
Score = 52.7 bits (127), Expect = 1e-09
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 189 CIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGR 248
+DF F+P+C C P++ + + A+D +H C+ C DC S
Sbjct: 6 SGKDFLAMFSPKCGGCNRPVLENY-------LSAMDTVWHPECFVCGDCFTSFS----TG 54
Query: 249 GCYPLDDHVLCKSC 262
+ LD C+
Sbjct: 55 SFFELDGRPFCELH 68
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 72.8 bits (179), Expect = 6e-17
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
C C KPI + +P+H CF C C K L G FT + +C+ F +A
Sbjct: 7 GCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTAR-DDFAYCLNCFCDLYAS 65
Query: 200 RC 201
Sbjct: 66 GP 67
Score = 59.3 bits (144), Expect = 4e-12
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C + I G T ++ +H CF C C QL G+ F + AYC +
Sbjct: 8 CVQCKKPITTGG--VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59
Score = 44.3 bits (105), Expect = 1e-06
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 195 KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLD 254
+ C C+ PI V ++ +H C+ C C LS G+ D
Sbjct: 2 SSGSSGCVQCKKPITTG-------GVTYREQPWHKECFVCTACRKQLS----GQRFTARD 50
Query: 255 DHVLCKSC 262
D C +C
Sbjct: 51 DFAYCLNC 58
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 71.7 bits (176), Expect = 2e-16
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
+ + A +C C+ PI + V +S+H C+ C+ C + L
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSS--VVAYEGQSWHDYCFHCKKCSVNL--- 56
Query: 245 AEGRGCYPLDDHVLCKSCNAK 265
+ + V C C K
Sbjct: 57 -ANKRFVFHQEQVYCPDCAKK 76
Score = 55.6 bits (134), Expect = 1e-10
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 81 CCKCGERILGEGSGC---TAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQ 132
C C I G G G + +H CF C C+V L K F + YC
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPD 72
Score = 52.5 bits (126), Expect = 2e-09
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 126 GHAYCEQGYLDTL-EKCSVCVKPIL-----DRILRATGRPYHPACFTCVVCGKSLDGIPF 179
Y + + +KC+ C PI ++ G+ +H CF C C +L F
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 180 TVDAANQIHCIQDFHK 195
Q++C K
Sbjct: 62 VFH-QEQVYCPDCAKK 76
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 70.6 bits (173), Expect = 5e-16
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 137 TLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK 196
+ C C I+ +++A + HP CF C C +L + +++C +
Sbjct: 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY-FFVEGELYCETHARAR 82
Query: 197 FAPRCC 202
+
Sbjct: 83 TSGPSS 88
Score = 63.3 bits (154), Expect = 2e-13
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C KCG I+G A DK H CF C C + L+ K ++ +EG YCE
Sbjct: 28 CDKCGSGIVGAV--VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHA 79
Score = 44.4 bits (105), Expect = 2e-06
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ P C C + I+ V+ A D+ H C+ C DC L L +G + ++
Sbjct: 23 QRMPLCDKCGSGIV-----GAVVK--ARDKYRHPECFVCADCNLNLK----QKGYFFVEG 71
Query: 256 HVLCKSCNAKRVQAL 270
+ C++ R
Sbjct: 72 ELYCETHARARTSGP 86
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 69.0 bits (169), Expect = 1e-15
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198
C C K I + +P+H CF CV C K L G FT +Q +C+ + +
Sbjct: 6 SGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAV-EDQYYCVDCYKNFVS 64
Query: 199 PRC 201
Sbjct: 65 GPS 67
Score = 63.6 bits (155), Expect = 1e-13
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C KC + I G T D+ +H CF C C+ +L G+ F +E YC Y + +
Sbjct: 8 CVKCNKAITSGG--ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSG 65
Query: 140 KCS 142
S
Sbjct: 66 PSS 68
Score = 45.5 bits (108), Expect = 4e-07
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 195 KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLD 254
+ C C I + D+ +H C+ C C L G+ ++
Sbjct: 2 SSGSSGCVKCNKAITSGG-------ITYQDQPWHADCFVCVTCSKKL----AGQRFTAVE 50
Query: 255 DHVLCKSC 262
D C C
Sbjct: 51 DQYYCVDC 58
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 68.9 bits (169), Expect = 2e-15
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 126 GHAYCEQGYLDTL-EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVD 182
+ KC C K I+ D+ + G +H CFTC C + + F
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK 61
Query: 183 AANQIHCIQDFHKKFAPRC 201
+C+ KFA
Sbjct: 62 -GEDFYCVTCHETKFASGP 79
Score = 54.7 bits (132), Expect = 3e-10
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
+ + ++ +P+C C I+ + V +H C+ C +C V+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQ-----NVEYKGTVWHKDCFTCSNCKQVI--- 53
Query: 245 AEGRGCYPLDDHVLCKSC 262
+P + C +C
Sbjct: 54 -GTGSFFPKGEDFYCVTC 70
Score = 54.3 bits (131), Expect = 4e-10
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C + I+ V+H CFTC +C + F+ YC +
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCH 71
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 68.6 bits (168), Expect = 2e-15
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C + ++YH CF C C Q FY EG YCE +
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Score = 57.0 bits (138), Expect = 3e-11
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 139 EKCSVCVKPI--LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK 196
C C ++I+ + G YH CF C C + F + +C DF
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEF-EGRKYCEHDFQML 70
Query: 197 FA 198
FA
Sbjct: 71 FA 72
Score = 45.9 bits (109), Expect = 4e-07
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 9/71 (12%)
Query: 192 DFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCY 251
F + C C+ P + V + +H C+ C C Y
Sbjct: 5 YFQGSASATCERCKGGFAPAEK-----IVNSNGELYHEQCFVCAQCFQQFP----EGLFY 55
Query: 252 PLDDHVLCKSC 262
+ C+
Sbjct: 56 EFEGRKYCEHD 66
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 68.6 bits (168), Expect = 2e-15
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 137 TLEKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK 196
L C C I+ ++ R HP C+ C CG +L +QI+C + ++
Sbjct: 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGH-FFVEDQIYCEKHARER 72
Query: 197 FAPRC 201
+
Sbjct: 73 VSGPS 77
Score = 58.6 bits (142), Expect = 1e-11
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C KCG I+G D+ H C+ C C L+ K + +E YCE+
Sbjct: 18 CDKCGTGIVGVF--VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHA 69
Score = 44.7 bits (106), Expect = 9e-07
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ P C C I+ V DR H CY C DCG L +G + ++D
Sbjct: 13 QKLPMCDKCGTGIVGVF-------VKLRDRHRHPECYVCTDCGTNLK----QKGHFFVED 61
Query: 256 HVLCKSCNAKRVQ 268
+ C+ +RV
Sbjct: 62 QIYCEKHARERVS 74
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 66.7 bits (163), Expect = 1e-14
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 140 KCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
C C K I+ R + G +H CF C C + + F NQ C+ + K+
Sbjct: 7 GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPK-DNQNFCVPCYEKQH 65
Query: 198 APRC 201
A
Sbjct: 66 ASGP 69
Score = 57.8 bits (140), Expect = 2e-11
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C + I+ +H +CF C C + K F + +C Y
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
Score = 50.5 bits (121), Expect = 8e-09
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ C C+ IMP + ++ S+H C+ C C + + P D+
Sbjct: 3 SGSSGCQECKKTIMPGTR-----KMEYKGSSWHETCFICHRCQQPI----GTKSFIPKDN 53
Query: 256 HVLCKSCNAKR 266
C C K+
Sbjct: 54 QNFCVPCYEKQ 64
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 65.9 bits (161), Expect = 2e-14
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
C C + I+ R+++A +HP CF C +C + L I F V A + C +++ A
Sbjct: 7 GCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGF-VKNAGRHLCRPCHNREKAS 65
Query: 200 RCC 202
Sbjct: 66 GPS 68
Score = 57.8 bits (140), Expect = 2e-11
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTLEK 140
C +CGE I+G AM+ +H CF CD C L F G C +
Sbjct: 8 CHQCGEFIIGRV--IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65
Query: 141 CSVC 144
Sbjct: 66 GPSS 69
Score = 42.0 bits (99), Expect = 7e-06
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257
+ C C I+ + A++ S+H C+RC+ C VL G
Sbjct: 5 SSGCHQCGEFIIGRV-------IKAMNNSWHPECFRCDLCQEVL----ADIGFVKNAGRH 53
Query: 258 LCKSCNAKR 266
LC+ C+ +
Sbjct: 54 LCRPCHNRE 62
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 65.5 bits (160), Expect = 3e-14
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 140 KCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
CS C + ++ R L G+ +H CF C C + L F D +C+ + KF
Sbjct: 7 GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPD-KGAHYCVPCYENKF 65
Query: 198 APRC 201
A
Sbjct: 66 ASGP 69
Score = 57.0 bits (138), Expect = 4e-11
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C CGE ++ + +H CF C C L + F +G YC Y
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61
Score = 49.3 bits (118), Expect = 2e-08
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ C C +MP S ++ +++H C+ C C L R P
Sbjct: 3 SGSSGCSACGETVMPGSR-----KLEYGGQTWHEHCFLCSGCEQPL----GSRSFVPDKG 53
Query: 256 HVLCKSCNAKR 266
C C +
Sbjct: 54 AHYCVPCYENK 64
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 64.6 bits (158), Expect = 5e-14
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
C C +PI R++ A G+ +H F C C K G +C +++ F
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYER-KGLAYCETHYNQLFGD 65
Score = 63.1 bits (154), Expect = 2e-13
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C I G AM K +H+ F C C G Y +G AYCE Y
Sbjct: 8 CGACRRPIEGRV--VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Score = 44.2 bits (105), Expect = 1e-06
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
P C CR PI V A+ + +H+ + C C G Y
Sbjct: 3 MGVPICGACRRPIEGRV-------VNAMGKQWHVEHFVCAKCEKPF----LGHRHYERKG 51
Query: 256 HVLCKSC 262
C++
Sbjct: 52 LAYCETH 58
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 65.8 bits (160), Expect = 8e-14
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 136 DTLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDA-ANQIHCIQDF 193
+ ++C+ C I DR +L A +H C C C L I + + I C D+
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
Query: 194 HKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVL 241
+ F M V+ + +G ++ ++
Sbjct: 63 IRLFGNSGAGGSGGHMGSGGD-----VMVVGEPTLMGGEFGDEDERLI 105
Score = 46.9 bits (111), Expect = 5e-07
Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL--EGKPFYIIEGHAYCEQGYLDT- 137
C CG +I + AMD +H C C C QL G Y G C Y+
Sbjct: 8 CAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Query: 138 LEKCSVCVKPILDRILRAT--GRPYHPAC 164
+ + G P
Sbjct: 67 GNSGAGGSGGHMGSGGDVMVVGEPTLMGG 95
Score = 39.2 bits (91), Expect = 2e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
RC C I D + + A+D +H C +C C L G Y +L
Sbjct: 6 KRCAGCGGKI-----ADRFL-LYAMDSYWHSRCLKCSSCQAQLGD--IGTSSYTKSGMIL 57
Query: 259 CKSC 262
C++
Sbjct: 58 CRND 61
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 65.5 bits (159), Expect = 8e-14
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLE-GKPFYIIEGHAYCEQGYLDT 137
G C C +RI DKVYH+ CF C C G + +I CEQ +
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEW 68
Query: 138 LE-KCSVCVKPILDRILRATGRPYHPAC 164
+ + G P
Sbjct: 69 TKINGGSGGSGGSGGDVMVVGEPTLMGG 96
Score = 50.5 bits (120), Expect = 3e-08
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 137 TLEKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIHCIQDF 193
C+ C K I + +R + YH CF C C K G + + + I C QD
Sbjct: 7 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDI 65
Query: 194 HKKFAPRCCVCRAPIMP 210
++ +
Sbjct: 66 YEWTKINGGSGGSGGSG 82
Score = 43.5 bits (102), Expect = 7e-06
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 193 FHKKFAPR--CCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGC 250
+ + F C C I E D+ +H+ C++C C S G
Sbjct: 1 YLRLFGQDGLCASCDKRIRAY----EMTMR-VKDKVYHLECFKCAACQKHFSV---GDRY 52
Query: 251 YPLDDHVLCKSC 262
++ ++C+
Sbjct: 53 LLINSDIVCEQD 64
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 62.1 bits (151), Expect = 6e-13
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 129 YCEQGYLDTL-EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQ 186
+ Y E C C + + A YHP CF C+ C + DG + +
Sbjct: 5 SSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHAT 64
Query: 187 IHCIQDFHKKFAPRC 201
++C + ++ +
Sbjct: 65 LYCGKCHNEVVSGPS 79
Score = 55.2 bits (133), Expect = 2e-10
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
+ +D+ KF C C + +VA + +H C+ C C +++
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPF-------MVAGEFKYHPECFACMSCKVIIED- 53
Query: 245 AEGRGCYPLDDHVLCKSCNAKRVQALTS 272
+ C C+ + V +S
Sbjct: 54 -GDAYALVQHATLYCGKCHNEVVSGPSS 80
Score = 47.5 bits (113), Expect = 1e-07
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 77 LFGECC-KCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHA-YCEQG 133
FGE C C + G A + YH CF C C V + +G + +++ YC +
Sbjct: 13 KFGEFCHGCSLLMTGPFM--VAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKC 70
Query: 134 Y 134
+
Sbjct: 71 H 71
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 61.4 bits (149), Expect = 1e-12
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 126 GHAYCEQGYLDTL-EKCSVCVKPIL--DRILRATGRPYHPACFTCVVCGKSLDGIPFTVD 182
Y +T C+ C + I R L R +H CF C C +SL PFT
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 183 AANQIHCIQDFHKKFAPRC 201
+++ C + F+
Sbjct: 62 -DSELLCNDCYCSAFSSGP 79
Score = 56.7 bits (137), Expect = 5e-11
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
+ + FA C C+ I DS + + DR FH GC+RC C L
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRE-----LFYEDRHFHEGCFRCCRCQRSL--- 53
Query: 245 AEGRGCYPLDDHVLCKSCNAKR 266
D +LC C
Sbjct: 54 -ADEPFTCQDSELLCNDCYCSA 74
Score = 56.0 bits (135), Expect = 1e-10
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C + I + D+ +H CF C C L +PF + C Y
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCY 71
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 60.2 bits (146), Expect = 2e-12
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 141 CSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPR 200
C C I ++ L PYHP F C CGK L + +++C+ K
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK--GELYCLPCHDKMGVSG 75
Query: 201 CC 202
Sbjct: 76 PS 77
Score = 44.8 bits (106), Expect = 9e-07
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C KC I + + YH F C +C +L ++G YC +
Sbjct: 18 CQKCHAII--DEQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCH 68
Score = 33.6 bits (77), Expect = 0.008
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
C C A I + ++ + +H + C +CG L+++ L +
Sbjct: 16 YICQKCHAII-------DEQPLIFKNDPYHPDHFNCANCGKELTAD-----ARELKGELY 63
Query: 259 CKSC 262
C C
Sbjct: 64 CLPC 67
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 60.1 bits (146), Expect = 3e-12
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 138 LEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK 196
C+ C + I L A + +H +CF C C L G + D +C D+H +
Sbjct: 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKD--GVPYCESDYHAQ 72
Query: 197 FAPRC 201
F
Sbjct: 73 FGSGP 77
Score = 49.4 bits (118), Expect = 2e-08
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C E I G A+DK +H+SCF C C+V L G+ + +G YCE Y
Sbjct: 18 CAGCKEEIK-HGQSLLALDKQWHVSCFKCQTCSVILTGE-YISKDGVPYCESDY 69
Score = 44.0 bits (104), Expect = 2e-06
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 191 QDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGC 250
+ + C C+ I ++ALD+ +H+ C++C+ C ++L+ E
Sbjct: 8 KPIKIRGPSHCAGCKEEIK------HGQSLLALDKQWHVSCFKCQTCSVILTGE-----Y 56
Query: 251 YPLDDHVLCKSC 262
D C+S
Sbjct: 57 ISKDGVPYCESD 68
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 59.7 bits (145), Expect = 4e-12
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 139 EKCSVCVKPILD-RILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKF 197
KC C + + ++ GR +H CF C+VC K+LD + +++C + KK+
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIH-DAEVYCKSCYGKKY 66
Query: 198 APRCCVC 204
P+
Sbjct: 67 GPKGYGY 73
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL-E 139
C CG + + +H CF C C L+ I + YC+ Y
Sbjct: 10 CGACGRTVY-HAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGP 68
Query: 140 KCSVC 144
K
Sbjct: 69 KGYGY 73
Score = 42.8 bits (101), Expect = 5e-06
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257
+C C + V RSFH C+ C C L S D V
Sbjct: 7 GNKCGACGRTVYHAE------EVQCDGRSFHRCCFLCMVCRKNLDS----TTVAIHDAEV 56
Query: 258 LCKSCNAKR 266
CKSC K+
Sbjct: 57 YCKSCYGKK 65
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 57.1 bits (138), Expect = 3e-11
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 139 EKCSVCVKPIL----DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFH 194
C+ C PI + + R +H CF C C SL G F + + I C
Sbjct: 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTE-RDDILCPDCGK 64
Query: 195 KKFAPRC 201
P
Sbjct: 65 DISGPSS 71
Score = 54.8 bits (132), Expect = 2e-10
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 81 CCKCGERILGEGSG--CTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCE 131
C C I G G + ++ +H CF C C++ L G+ F C
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCP 60
Score = 49.4 bits (118), Expect = 2e-08
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ C C PI + +R +H C+ C+ C L L GRG D
Sbjct: 3 SGSSGCAGCTNPISGLGGTK---YISFEERQWHNDCFNCKKCSLSL----VGRGFLTERD 55
Query: 256 HVLCKSCNAKR 266
+LC C
Sbjct: 56 DILCPDCGKDI 66
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 55.6 bits (134), Expect = 1e-10
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 81 CCKCGERILGEGSG--CTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQ 132
C C + I G D +H CF C C+V L GK F +C++
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
Score = 54.9 bits (132), Expect = 2e-10
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 196 KFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDD 255
+ C C PI + D +H C+ C C + L G+G +
Sbjct: 3 SGSSGCVACSKPISGL---TGAKFICFQDSQWHSECFNCGKCSVSL----VGKGFLTQNK 55
Query: 256 HVLCKSCNAKRVQALT 271
+ C+ C + ++
Sbjct: 56 EIFCQKCGSGMDTDIS 71
Score = 47.5 bits (113), Expect = 1e-07
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 139 EKCSVCVKPIL----DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFH 194
C C KPI + + +H CF C C SL G F +I C +
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQ-NKEIFCQKCGS 64
Query: 195 KKFAPRC 201
Sbjct: 65 GMDTDIS 71
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 55.8 bits (134), Expect = 2e-10
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTV-DAANQIHCIQDFH 194
+L C C + I DR L+A + +H C +C +CG L + + + C +D+
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
Query: 195 KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDC 237
+ + + + + +
Sbjct: 62 RLGGSGGHMGSGGDVMVVGEPTL---MGGEFGDEDERLITRLE 101
Score = 53.5 bits (128), Expect = 2e-09
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL--EGKPFYIIEGHAYCEQGYLDTL 138
C C + I A+D+ +H C +CD C +L G+ Y G C + YL
Sbjct: 6 CGGCQQNIGDRYF-LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64
Query: 139 EKCSVC-----VKPILDRILRATGRPYHPACFTCVVCGKSLDG 176
V + + L + D
Sbjct: 65 GSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA 107
Score = 37.3 bits (86), Expect = 0.001
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
C C+ I D + A+D+ +H C C+ CG L GR Y L
Sbjct: 4 LTCGGCQQNIG-----DRYF-LKAIDQYWHEDCLSCDLCGCRLGE--VGRRLYYKLGRKL 55
Query: 259 CKSC 262
C+
Sbjct: 56 CRRD 59
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 55.1 bits (132), Expect = 5e-10
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDA-ANQIHCIQDFH 194
+ ++C+ C I DR +L A +H C C C L I + + I C D+
Sbjct: 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 119
Query: 195 KKFA 198
+ F
Sbjct: 120 RLFG 123
Score = 48.6 bits (115), Expect = 1e-07
Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 34 PPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLFGECCKCGERILGEGS 93
P +DLS ++++ S C CG +I +
Sbjct: 21 PGADLSQYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWK----RCAGCGGKIA-DRF 75
Query: 94 GCTAMDKVYHISCFTCDHCAVQL--EGKPFYIIEGHAYCEQGY 134
AMD +H C C C QL G Y G C Y
Sbjct: 76 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 118
Score = 42.4 bits (99), Expect = 2e-05
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 185 NQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSE 244
RC C I D + + A+D +H C +C C L
Sbjct: 48 GGSGGHMGSGGLSWKRCAGCGGKIA-----DRFL-LYAMDSYWHSRCLKCSSCQAQLGD- 100
Query: 245 AEGRGCYPLDDHVLCKSC 262
G Y +LC++
Sbjct: 101 -IGTSSYTKSGMILCRND 117
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 52.5 bits (126), Expect = 2e-09
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 192 DFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCY 251
D+ + + RC C I + V AL +++H C+ C C L G
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEV-------VSALGKTYHPDCFVCAVCRLPFP---PGDRVT 58
Query: 252 PLDDHVLCKSCN 263
+C+ C+
Sbjct: 59 FNGKECMCQKCS 70
Score = 50.6 bits (121), Expect = 9e-09
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHC 189
+C C + I ++ A G+ YHP CF C VC + C
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMC 66
Score = 49.8 bits (119), Expect = 2e-08
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 77 LFGECC-KCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQ 132
L+G C C + I EG +A+ K YH CF C C + G C++
Sbjct: 13 LYGTRCFSCDQFI--EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 50.4 bits (121), Expect = 7e-09
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 140 KCSVCVKPI-LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQD-FHKKF 197
KC C K + + + G+ +H C C CGK+L + + +C + F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA-EHEGKPYCNHPCYSAMF 60
Query: 198 APRCC 202
P+
Sbjct: 61 GPKGF 65
Score = 45.4 bits (108), Expect = 5e-07
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQ 132
C KC + + T++ K +H C C+ C L EG YC
Sbjct: 3 CPKCDKEVY-FAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNH 53
Score = 39.6 bits (93), Expect = 6e-05
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHVL 258
P+C C + RV +L + +H C +CE CG L+S G +
Sbjct: 1 PKCPKCDKEVYFAE------RVTSLGKDWHRPCLKCEKCGKTLTS----GGHAEHEGKPY 50
Query: 259 CK 260
C
Sbjct: 51 CN 52
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 49.1 bits (117), Expect = 4e-08
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 139 EKCSVCVKPI--LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKK 196
E C C K + ++R+L A + +H +CF C C L + +I+C F++
Sbjct: 16 ETCVECQKTVYPMERLL-ANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIYCKPHFNQL 73
Query: 197 FAPRCCVCR 205
F +
Sbjct: 74 FKSKGNYDE 82
Score = 47.5 bits (113), Expect = 1e-07
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 81 CCKCGERI-LGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
C +C + + E A +V+HISCF C +C +L + + G YC+ +
Sbjct: 18 CVECQKTVYPMER--LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70
Score = 42.1 bits (99), Expect = 1e-05
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257
C C+ + P R++A + FHI C+RC C LS L +
Sbjct: 15 RETCVECQKTVYP------MERLLANQQVFHISCFRCSYCNNKLSL----GTYASLHGRI 64
Query: 258 LCKSCNAK 265
CK +
Sbjct: 65 YCKPHFNQ 72
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 47.8 bits (114), Expect = 9e-08
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYIIEGHAYCEQGYLDTL 138
C KC + + +++ K +H C C+ C+ L +G +C + TL
Sbjct: 12 CPKCDKTVY-FAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATL 68
Score = 47.4 bits (113), Expect = 1e-07
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 137 TLEKCSVCVKPI-LDRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQD-FH 194
KC C K + + + G+ +H C C C K+L + + C + +
Sbjct: 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA-EHDGKPFCHKPCYA 66
Query: 195 KKFAPRC 201
F
Sbjct: 67 TLFGSGP 73
Score = 37.8 bits (88), Expect = 3e-04
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSS 243
A +C C + +V +L + +H C +CE C L+
Sbjct: 9 ASKCPKCDKTVYFAE------KVSSLGKDWHKFCLKCERCSKTLTP 48
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 42.8 bits (100), Expect = 4e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 139 EKCSVCVKPILDRILRATGRPYHPACFTCVVCGKSL-DGIPFTVDAANQIH 188
C C K I R+L A + YHP+C CV CG+ +G + ++ H
Sbjct: 6 SGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 40.1 bits (93), Expect = 4e-05
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQL-EGKPFYIIEGHAYCEQ 132
C C + I G A +K YH SC C C EG+ Y+ +
Sbjct: 8 CDSCEKYI--TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
Score = 31.6 bits (71), Expect = 0.040
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 195 KKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLD 254
+ C C I + A ++ +H C C CG + AEG Y
Sbjct: 2 SSGSSGCDSCEKYITGRV-------LEAGEKHYHPSCALCVRCGQMF---AEGEEMYLQG 51
Query: 255 DHVLCKSCNAKR 266
+ +C
Sbjct: 52 SSIWHPACRQAA 63
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 39.5 bits (92), Expect = 9e-05
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCFTCDHCAVQLEGKPFYII--EGHAYCEQ 132
C CGE + +H SCF C C L + +GH YC Q
Sbjct: 18 CALCGEHLYV-LERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ 70
Score = 39.2 bits (91), Expect = 1e-04
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPACFTCVVCGKSLDGIPFTVDAAN-QIHCIQDFH 194
+ C++C + + L G +H +CF C C +L + + +C+Q
Sbjct: 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73
Query: 195 K 195
+
Sbjct: 74 Q 74
Score = 33.8 bits (77), Expect = 0.008
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 198 APRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPLDDHV 257
C +C + R+ FH C+RC C L +P D H
Sbjct: 15 GDLCALCGEHLYVLE------RLCVNGHFFHRSCFRCHTCEATLWPGGY--EQHPGDGHF 66
Query: 258 LCKSCNAK 265
C +
Sbjct: 67 YCLQHLPQ 74
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 37.9 bits (88), Expect = 2e-04
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHIS--CFTCDHCAVQLEGKPFYIIEGHAYC 130
C C I E T + +H S CF C C+ L G+ F +EG +C
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 35.2 bits (81), Expect = 0.002
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 139 EKCSVCVKPIL--DRILRATGRPYH--PACFTCVVCGKSLDGIPFTVDAANQIHCIQDFH 194
C C I + + +H CF C C K L G F + C +
Sbjct: 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV-EGMVFCSVECK 61
Query: 195 KKFA 198
K+ +
Sbjct: 62 KRMS 65
Score = 34.4 bits (79), Expect = 0.003
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 197 FAPRCCVCRAPIMPDSEQDETVRVVALDRSFHI--GCYRCEDCGLVLSSEAEGRGCYPLD 254
A C C I P+ + RV + S+H C+ C C L G+ P++
Sbjct: 1 HAVVCQGCHNAIDPEVQ-----RVTYNNFSWHASTECFLCSCCSKCL----IGQKFMPVE 51
Query: 255 DHVLCKSCNAKRV 267
V C KR+
Sbjct: 52 GMVFCSVECKKRM 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.004
Identities = 48/282 (17%), Positives = 91/282 (32%), Gaps = 67/282 (23%)
Query: 8 GVEGMLESRLRS--SSMYESI-YEPINPRPPSDLSSRSNYSLYSSNIPPPEAEV------ 58
V+ +E LR + I E P + + LY+ N + V
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 59 ----DALTDL------LVHSLDTSSESDLFGECCKCGERILGEGSGCTAMDKVYHIS--- 105
AL +L L+ + S ++ + + C ++ C K++ ++
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQ-----CKMDFKIFWLNLKN 191
Query: 106 CFTCDHCAVQLEGKPFYIIE--GHAYCEQGYLDTLEKCSVCVKPILDRILRATGRPYHPA 163
C + + L+ K Y I+ + + L S ++ L R+L++ +PY
Sbjct: 192 CNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKS--KPY-EN 245
Query: 164 CFTCVVCGKSLDGI--PFTVDAANQIHC----------IQDFHKKFAPRCCVCRAPIMPD 211
C +V L + +A N + C + DF A +
Sbjct: 246 CL--LV----LLNVQNAKAWNAFN-LSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMT 297
Query: 212 SEQDETVRVVALDRSFHIGCYRCEDCGLVLSSEAEGRGCYPL 253
DE ++ ++ C R +D L E P
Sbjct: 298 LTPDEVKSLLLK----YLDC-RPQD----LPREV--LTTNPR 328
Score = 27.1 bits (59), Expect = 9.5
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 13 LESRLRSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTS 72
LE ++R S + I L Y Y I + + + L + ++ L
Sbjct: 503 LEQKIRHDSTAWNASGSILN----TLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKI 555
Query: 73 SESDLFGECC 82
E+ + +
Sbjct: 556 EENLICSKYT 565
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.010
Identities = 34/265 (12%), Positives = 67/265 (25%), Gaps = 84/265 (31%)
Query: 30 INPRPPSDLSSRS----NY--SLYSSNIPPPEAEVDALTDLLVHSLDTSSESD-----LF 78
+ + L NY + + P + AL E + +F
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-------FRAVGEGNAQLVAIF 160
Query: 79 GECCKCGERILGEGSGCTAMD---KVYHISCFTCDHCAVQLEGKPFY--IIEGHAYCEQG 133
G G+G+ + +Y +I+ A
Sbjct: 161 G----------GQGNTDDYFEELRDLYQTY-------------HVLVGDLIKFSA----E 193
Query: 134 YLDTLEKCSVCVKPILDRIL-------RATGRPYHPACFTCVVCGKSLDGIPFTVDAAN- 185
L L + ++ + + + L + P + + S I + A+
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---SCPLI-GVIQLAHY 249
Query: 186 QIHC-IQDF-HKKFAPRCC---VCRAPI-------MPDSEQDETVRVV-ALDRSFHIGCY 232
+ + F + + DS + V V A+ F IG
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV- 308
Query: 233 RCEDC--------GLVLSSEAEGRG 249
RC + ++ S G
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEG 333
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.9 bits (77), Expect = 0.031
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 18/46 (39%)
Query: 200 RCCVCRAP---IMPDSEQDETVRVVALDRSFHIGCYRCEDCGLVLS 242
C C+ I+ + + V C CGLVLS
Sbjct: 23 TCPECKVYPPKIVERFSEGDVV---------------CALCGLVLS 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.2
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 8/22 (36%)
Query: 13 LESRLRSSSMYESIYEPINPRP 34
L++ L+ +Y + P
Sbjct: 25 LQASLK-------LYAD-DSAP 38
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 97
Score = 27.1 bits (60), Expect = 2.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 32 PRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLL 65
P P + +Y N+ P +A V L L
Sbjct: 8 PGSPPGEGAPLAADVYVGNL-PRDARVSDLKRAL 40
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 28.1 bits (63), Expect = 3.0
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 166 TCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSE-QDETVRVVALD 224
TC VC + G D PRC VC + PD E L
Sbjct: 141 TCTVCQRPFPGEDI----------RADVMADRVPRCPVCTGVVKPDIVFFGE-----PLP 185
Query: 225 RSFHIGCYRCEDCGLVL 241
+ F + L+L
Sbjct: 186 QRFLLHVVDFPMADLLL 202
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 28.1 bits (63), Expect = 3.4
Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 18/83 (21%)
Query: 166 TCVVCGK--SLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVV-- 221
C C D + T+ A CR + ++
Sbjct: 140 ECAKCKTQYVRDTVVGTMGLKATGRLCTVAK---ARGLRACRGELRDT--------ILDW 188
Query: 222 --ALDRSFHIGCYR-CEDCGLVL 241
+L + L +
Sbjct: 189 EDSLPDRDLALADEASRNADLSI 211
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid
biosynthesis, transferase; 1.70A {Escherichia coli}
PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A*
2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Length = 253
Score = 27.9 bits (63), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 54 PEAEVDALTDLLVHSLDT 71
P EV AL +L V +LD+
Sbjct: 78 PAQEVSALMELFVWALDS 95
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.8 bits (62), Expect = 4.6
Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 18/83 (21%)
Query: 166 TCVVCGK--SLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVV-- 221
C C D + T+ A CR + ++
Sbjct: 140 ECAKCKTQYVRDTVVGTMGLKATGRLCTVAK---ARGLRACRGELRDT--------ILDW 188
Query: 222 --ALDRSFHIGCYR-CEDCGLVL 241
+L + L +
Sbjct: 189 EDSLPDRDLALADEASRNADLSI 211
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 27.4 bits (61), Expect = 5.1
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 166 TCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPD 211
C+ CGK + + K +C VC + P
Sbjct: 138 HCIGCGK-------VYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA 176
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 27.7 bits (61), Expect = 5.3
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 166 TCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPD 211
C+ CGK + + K +C VC + P
Sbjct: 146 HCIGCGK-------VYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA 184
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase,
transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Length = 245
Score = 26.7 bits (60), Expect = 6.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 54 PEAEVDALTDLLVHSLDT 71
P++EVD L +L L
Sbjct: 76 PKSEVDFLMKMLKKYLKD 93
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural
genomics, center for structural GEN infectious
diseases; HET: FFT; 2.46A {Campylobacter jejuni}
Length = 225
Score = 26.7 bits (60), Expect = 7.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 54 PEAEVDALTDLLVHSLDT 71
P+ E+D + +LL LD
Sbjct: 67 PKDEIDFIFELLDRCLDE 84
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 26.7 bits (60), Expect = 8.1
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 23/81 (28%)
Query: 166 TCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIMPDSEQDETVRVV---- 221
CV C K I+ P C C + I P+ +V
Sbjct: 123 YCVRCEKKYTVEDV----------IKKLESSDVPLCDDCNSLIRPN--------IVFFGE 164
Query: 222 ALDRSFHIGCYR-CEDCGLVL 241
L + L++
Sbjct: 165 NLPQDALREAIGLSSRASLMI 185
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW
fold for isoprenoid synthase, peptidoglycan synthesis,
transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Length = 249
Score = 26.7 bits (60), Expect = 8.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 54 PEAEVDALTDLLVHSLDT 71
P+ EV+ L L L+T
Sbjct: 81 PKDEVNYLMKLPGDFLNT 98
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 26.7 bits (59), Expect = 9.0
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 24/97 (24%)
Query: 150 DRILRATGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRCCVCRAPIM 209
+ ++ A G Y C + C + + P+C C++ +
Sbjct: 148 EDLVEAHGTFYTSHCVSAS-CRHEYPLSWM----------KEKIFSEVTPKCEDCQSLVK 196
Query: 210 PDSEQDETVRVV----ALDRSFHIGCYR-CEDCGLVL 241
PD +V +L F L+L
Sbjct: 197 PD--------IVFFGESLPARFFSCMQSDFLKVDLLL 225
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 25.9 bits (56), Expect = 9.2
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 107 FTCDHCAVQLEGKPF---YIIEGHAYCEQGYLDTLEKCSVCV-----KPILDRILRATGR 158
F C C + + H Y D + KP +L G+
Sbjct: 20 FRCKDC-----SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 159 PYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
C+ CG S F +H I+ H +
Sbjct: 75 EDAQKVLKCMYCGHS-----FESLQDLSVHMIKTKHYQKVS 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.442
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,302,568
Number of extensions: 254777
Number of successful extensions: 1207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1014
Number of HSP's successfully gapped: 194
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)