RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15692
(278 letters)
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 65.9 bits (161), Expect = 3e-15
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 166 TCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFA 198
TCVVC + LDGIPFTVDA +QIHCI+DFH+KFA
Sbjct: 1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 57.9 bits (140), Expect = 2e-12
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 131 EQGYLDTLEKCSVCVKPILDRILRATGRPYHPACF 165
E Y+ TLEKC+ C +PILDRILRA G+ YHP CF
Sbjct: 1 EGCYVATLEKCATCSQPILDRILRAMGKAYHPGCF 35
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 41.5 bits (98), Expect = 2e-06
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 191 QDFHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCY 232
+DF F+P+C C P++ + + A+D +H C+
Sbjct: 1 KDFLAMFSPKCGGCNRPVLEN-------YLSAMDTVWHPECF 35
Score = 37.7 bits (88), Expect = 4e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 139 EKCSVCVKPILDRILRATGRPYHPACF 165
KC C +P+L+ L A +HP CF
Sbjct: 9 PKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 31.1 bits (71), Expect = 0.009
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 76 DLFGECC-KCGERILGEGSGCTAMDKVYHISCF 107
+F C C +L +AMD V+H CF
Sbjct: 5 AMFSPKCGGCNRPVLENY--LSAMDTVWHPECF 35
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 37.2 bits (86), Expect = 6e-05
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 109 CDHCAVQLEGKPFYIIEGHAYCEQGYLDTLE 139
C C QL G+ FY +E AYCE Y+ TLE
Sbjct: 2 CSTCRAQLRGQHFYAVERRAYCEGCYVATLE 32
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 37.2 bits (86), Expect = 6e-05
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCF 107
C CGE ++G+G+G A+D+V+H+ CF
Sbjct: 1 CGGCGEDVVGDGAGVVALDRVFHVGCF 27
Score = 25.6 bits (56), Expect = 0.70
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 220 VVALDRSFHIGCY 232
VVALDR FH+GC+
Sbjct: 15 VVALDRVFHVGCF 27
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 140 KCSVCVKPILDRILRATGRPYHPACF 165
C+ C + I L A G+ +HP F
Sbjct: 20 MCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 25.1 bits (55), Expect = 1.6
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 81 CCKCGERILGEGSGCTAMDKVYHISCF 107
C C + I G A+ K +H F
Sbjct: 21 CAHCNQVIRGPF--LVALGKSWHPEEF 45
Score = 23.2 bits (50), Expect = 8.4
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 199 PRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCY 232
P C C I +VAL +S+H +
Sbjct: 19 PMCAHCNQVIRGPF-------LVALGKSWHPEEF 45
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 32.8 bits (75), Expect = 0.003
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
F C C Q FY EG YCE +
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDF 28
Score = 30.4 bits (69), Expect = 0.015
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 165 FTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAP 199
F C C + F + + +C DF FAP
Sbjct: 1 FVCAQCFQQFPEGLF-YEFEGRKYCEHDFQMLFAP 34
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 30.1 bits (68), Expect = 0.020
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 140 KCSVCVKPILDRILRATGRPYHP 162
C C +PI R++ A G+ +H
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHV 29
Score = 23.6 bits (51), Expect = 4.9
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 195 KKFAPRCCVCRAPIMPDSEQDETVRVV-ALDRSFH 228
P C CR PI RVV A+ + +H
Sbjct: 2 SMGVPICGACRRPIEG--------RVVNAMGKQWH 28
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 28.9 bits (65), Expect = 0.056
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPAC 164
+ ++C+ C I DR +L A +H C
Sbjct: 1 SWKRCAGCGGKIADRFLLYAMDSYWHSRC 29
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.7 bits (64), Expect = 0.081
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCF 107
C C E I G A+DK +H+SCF
Sbjct: 9 SHCAGCKEEIK-HGQSLLALDKQWHVSCF 36
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 45
Score = 27.8 bits (62), Expect = 0.19
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 133 GYLDTLEKCSVCVKPILDRILRATGRPYHPACF 165
G + C C I+ +++A + HP CF
Sbjct: 13 GSAQRMPLCDKCGSGIVGAVVKARDKYRHPECF 45
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 27.4 bits (61), Expect = 0.21
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 79 GECCKCGERILGEGSGCTAMDKVYHISCF 107
G C CG+ I A VYH+ CF
Sbjct: 3 GACSACGQSIPASELVMRAQGNVYHLKCF 31
Score = 23.1 bits (50), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 141 CSVCVKPIL--DRILRATGRPYHPACF 165
CS C + I + ++RA G YH CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 27.1 bits (60), Expect = 0.27
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 107 FTCDHCAVQLEGKPFYIIEGHAYCEQGY 134
F C C G Y +G AYCE Y
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHY 28
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 27.1 bits (60), Expect = 0.32
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 139 EKCSVCVKPILDRILRATGRPYHPAC 164
+C C + I ++ A G+ YHP C
Sbjct: 16 TRCFSCDQFIEGEVVSALGKTYHPDC 41
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.6 bits (59), Expect = 0.34
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 109 CDHCAVQLEGKPFYIIEGHAYCEQGY 134
C C F+ ++G +CE Y
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFCELHY 27
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.7 bits (59), Expect = 0.35
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 193 FHKKFAPRCCVCRAPIMPDSEQDETVRVVALDRSFHIGCY 232
++ +P+C C I+ + V +H C+
Sbjct: 3 TTREDSPKCKGCFKAIVAGDQ-----NVEYKGTVWHKDCF 37
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.1 bits (57), Expect = 0.48
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 141 CSVCVKPILDRILRATGRPYHPAC 164
C C K I R+L A + YHP+C
Sbjct: 8 CDSCEKYITGRVLEAGEKHYHPSC 31
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 25.5 bits (56), Expect = 0.73
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 137 TLEKCSVCVKPILDR-ILRATGRPYHPAC 164
+L C C + I DR L+A + +H C
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 26.0 bits (57), Expect = 0.76
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 139 EKCSVCVKPI--LDRILRATGRPYHPACF 165
+ C C + + ++++ G+ +H +CF
Sbjct: 16 DGCPRCGQAVYAAEKVI-GAGKSWHKSCF 43
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 25.2 bits (55), Expect = 0.87
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 141 CSVCVKPILDRILRATGRPYHPACF 165
C C + I+ R+++A +HP CF
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.5 bits (56), Expect = 1.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 193 FHKKFAPRCCVCRAPI 208
+ KFAPRC C +
Sbjct: 3 YENKFAPRCARCSKTL 18
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 25.1 bits (55), Expect = 1.2
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 137 TLEKCSVCVKPI--LDRILRATGRPYHPACF 165
+ C++C + + L+R+ G +H +CF
Sbjct: 7 AGDLCALCGEHLYVLERLC-VNGHFFHRSCF 36
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 25.1 bits (55), Expect = 1.2
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 139 EKCSVCVKPI--LDRILRATGRPYHPACF 165
E C C K + ++R+L A + +H +CF
Sbjct: 8 ETCVECQKTVYPMERLL-ANQQVFHISCF 35
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.2 bits (55), Expect = 1.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 133 GYLDTLEKCSVCVKPILDRILRATGRPYHPACF 165
G L C C I+ ++ R HP C+
Sbjct: 3 GNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECY 35
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 24.7 bits (54), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 167 CVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRC 201
C CGKSL+ D +I+C + K F P+
Sbjct: 2 CAKCGKSLESTTLA-DKDGEIYCKGCYAKNFGPKG 35
Score = 24.3 bits (53), Expect = 4.0
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 233 RCEDCGLVLSSEAEGRGCYPLDDHVLCKSCNAKR 266
RC CG L S D + CK C AK
Sbjct: 1 RCAKCGKSLES----TTLADKDGEIYCKGCYAKN 30
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 24.0 bits (52), Expect = 2.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 109 CDHCAVQLEGKPFYIIEGHAYCE 131
C C L+ K + +E YCE
Sbjct: 2 CTDCGTNLKQKGHFFVEDQIYCE 24
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 31
Score = 24.0 bits (52), Expect = 3.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 109 CDHCAVQLEGKPFYIIEGHAYCEQ 132
C C + L+ K ++ +EG YCE
Sbjct: 2 CADCNLNLKQKGYFFVEGELYCET 25
>d1go3e2 d.230.1.1 (E:1-78) N-terminal, heterodimerisation domain of
RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 78
Score = 24.2 bits (53), Expect = 5.8
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 19/59 (32%)
Query: 115 QLEGKPFYIIEGHAYCEQGYLDTLEKCSVCVKPILD----RILRATGRPYHPACFTCVV 169
+ EG+ + + + + + + D +++ G YHP F +V
Sbjct: 33 KYEGR---LDKDVGFV------------LSIVDVKDIGEGKVVHGDGSAYHPVVFETLV 76
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 25.4 bits (55), Expect = 6.0
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 156 TGRPYHPACFTCVVCGKSLDGIPFTVDAANQIHCIQDFHKKFAPRC 201
P C C K L+G D + HKK + C
Sbjct: 42 CPTENEPDLAQCFFCFKELEGWEPDDDPIEE-------HKKHSSGC 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.442
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,074,112
Number of extensions: 52515
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 91
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)