BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15694
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1
PE=1 SV=2
Length = 578
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 4/58 (6%)
Query: 22 SDGGDDPME----NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
+ G +P E NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI ++
Sbjct: 14 AKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISML 71
>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1
Length = 590
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 1 MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
M++DY D+ D + D G+ E+ EV ECL KFST DYIMEP IF+ LK
Sbjct: 10 MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67
Query: 60 RYFQAGGNPEQVIELM 75
RYFQAGG+PE VI+L+
Sbjct: 68 RYFQAGGSPENVIQLL 83
>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2
Length = 590
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 1 MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
M++DY D+ D + D G+ E+ EV ECL KFST DYIMEP IF+ LK
Sbjct: 10 MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67
Query: 60 RYFQAGGNPEQVIELM 75
RYFQAGG+PE VI+L+
Sbjct: 68 RYFQAGGSPENVIQLL 83
>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1
Length = 590
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 5/60 (8%)
Query: 21 DSDGG---DD--PMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
++DGG DD E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct: 24 EADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 83
>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2
Length = 591
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 6/61 (9%)
Query: 21 DSDGG----DDPME--NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIEL 74
++DGG DD E + EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L
Sbjct: 24 EADGGQHQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQL 83
Query: 75 M 75
+
Sbjct: 84 L 84
>sp|Q1QA43|OBG_PSYCK GTPase obg OS=Psychrobacter cryohalolentis (strain K5) GN=obg PE=3
SV=1
Length = 405
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 17 MVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIF 55
+VD+ G DP+EN + +LNE LE+FS P+ P I
Sbjct: 244 LVDIKPIDGSDPVENARVILNE-LERFS-PELANLPQIL 280
>sp|A5H2P4|ARO12_LODEL Pentafunctional AROM polypeptide 2 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=ARO1-2 PE=3 SV=1
Length = 1551
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 20 VDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQ-------LKRYFQAGG 66
V G D E EVLNECLEKF + G + LK Y ++GG
Sbjct: 901 VKEKGWDYFREKETEVLNECLEKFGKGHILATGGGIVEGEKPREALKNYTKSGG 954
>sp|A5H2Q8|ARO11_LODEL Pentafunctional AROM polypeptide 1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=ARO1-1 PE=3 SV=1
Length = 1551
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 20 VDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQ-------LKRYFQAGG 66
V G D E EVLNECLEKF + G + LK Y ++GG
Sbjct: 901 VKEKGWDYFREKETEVLNECLEKFGKGHILATGGGIVEGEKPREALKNYTKSGG 954
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,724,583
Number of Sequences: 539616
Number of extensions: 1420835
Number of successful extensions: 3507
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3488
Number of HSP's gapped (non-prelim): 26
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)