Query psy15694
Match_columns 81
No_of_seqs 34 out of 36
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di0_A Activating signal coint 77.7 1.8 6.1E-05 27.2 2.8 23 54-79 32-54 (71)
2 2v75_A Nuclear polyadenylated 67.6 6.6 0.00023 26.5 3.8 22 57-78 34-55 (104)
3 1dv0_A DNA repair protein HHR2 67.4 2.7 9.3E-05 23.6 1.6 23 56-78 20-42 (47)
4 2g3q_A Protein YBL047C; endocy 62.4 8.5 0.00029 20.5 3.0 22 57-78 21-42 (43)
5 3onq_A Regulator of polyketide 52.2 20 0.00067 25.7 4.3 43 34-78 180-222 (262)
6 3jxy_A Alkylpurine DNA glycosy 50.8 29 0.001 24.0 5.0 47 30-78 162-208 (232)
7 1njg_A DNA polymerase III subu 50.6 32 0.0011 21.2 4.6 29 46-76 201-229 (250)
8 2z84_A UFSP1, UFM1-specific pr 49.2 5.6 0.00019 29.4 1.0 18 51-68 122-139 (218)
9 1wji_A Tudor domain containing 49.1 20 0.00069 21.1 3.4 23 57-79 26-48 (63)
10 2knz_A Ubiquilin-4; cytoplasm, 48.9 19 0.00065 20.3 3.1 24 56-79 28-51 (53)
11 2jy5_A Ubiquilin-1; UBA, alter 48.1 16 0.00055 20.6 2.7 23 56-78 29-51 (52)
12 2b6c_A Hypothetical protein EF 48.1 39 0.0013 23.2 5.2 45 30-76 155-199 (220)
13 1z1s_A Hypothetical protein PA 43.8 11 0.00036 24.0 1.6 29 50-78 21-51 (163)
14 2dak_A Ubiquitin carboxyl-term 43.4 23 0.0008 20.4 3.0 24 56-79 25-48 (63)
15 4err_A Autotransporter adhesin 43.1 15 0.00051 24.0 2.3 23 53-76 27-49 (90)
16 3swh_A MUNC13-1, protein UNC-1 43.0 10 0.00035 28.8 1.7 35 38-72 272-308 (341)
17 3jtp_A Adapter protein MECA 1; 40.5 9.8 0.00034 23.8 1.1 16 48-63 82-97 (98)
18 1qjc_A Phosphopantetheine aden 40.2 26 0.00088 22.0 3.0 25 56-80 129-158 (158)
19 2k54_A Protein ATU0742; protei 40.0 10 0.00035 22.5 1.0 27 53-79 4-32 (123)
20 2wvi_A Mitotic checkpoint seri 39.8 82 0.0028 21.7 5.8 48 31-78 41-89 (164)
21 1od6_A PPAT, phosphopantethein 39.0 31 0.0011 21.8 3.3 25 56-80 130-159 (160)
22 2bwb_A Ubiquitin-like protein 38.6 26 0.00088 19.4 2.5 20 58-77 26-45 (46)
23 2cpg_A REPA protein, transcrip 38.1 42 0.0014 17.2 3.8 30 50-79 9-39 (45)
24 1wiv_A UBP14, ubiquitin-specif 37.6 36 0.0012 20.5 3.3 40 31-79 29-68 (73)
25 1z96_A DNA-damage, UBA-domain 37.0 41 0.0014 17.0 3.1 18 58-75 22-39 (40)
26 2hza_A Nickel-responsive regul 36.0 46 0.0016 21.6 3.9 30 50-79 8-39 (133)
27 1qz7_B Axin; beta-catenin, pro 35.5 22 0.00075 22.5 2.1 21 26-46 29-50 (70)
28 3o60_A LIN0861 protein; PSI, M 35.0 47 0.0016 21.2 3.7 27 51-77 150-178 (185)
29 2chg_A Replication factor C sm 34.8 56 0.0019 19.9 3.9 26 50-77 181-206 (226)
30 1ify_A HHR23A, UV excision rep 34.3 35 0.0012 18.9 2.6 21 58-78 26-46 (49)
31 3oqc_A UFSP2, UFM1-specific pr 34.1 15 0.00052 30.2 1.4 17 52-68 392-408 (481)
32 1s5a_A Hypothetical protein YE 34.1 13 0.00044 22.4 0.8 27 53-79 11-39 (150)
33 1tuh_A BAL32A, hypothetical pr 33.8 13 0.00044 23.1 0.8 27 53-79 30-58 (156)
34 3f9s_A Putative polyketide cyc 33.2 13 0.00044 22.7 0.7 25 56-80 10-37 (146)
35 2ki0_A DS119; beta-alpha-beta, 33.2 29 0.001 19.2 2.1 15 63-77 9-23 (36)
36 1whc_A RSGI RUH-027, UBA/UBX 3 33.1 50 0.0017 19.2 3.3 25 55-79 24-49 (64)
37 2cpw_A CBL-interacting protein 32.8 44 0.0015 19.5 3.0 25 55-79 34-59 (64)
38 2ipq_X Hypothetical protein ST 32.8 22 0.00074 24.1 1.9 18 48-68 41-58 (135)
39 3d9r_A Ketosteroid isomerase-l 32.4 21 0.00071 20.9 1.5 26 53-78 12-39 (135)
40 1sxj_D Activator 1 41 kDa subu 32.2 94 0.0032 21.1 5.1 42 33-76 195-236 (353)
41 2fzp_A NRDP1, ring finger prot 32.2 35 0.0012 24.1 2.9 33 43-79 45-77 (144)
42 2qsf_X RAD23, UV excision repa 32.0 34 0.0012 24.2 2.8 24 56-79 146-169 (171)
43 2ltm_A NFU1 iron-sulfur cluste 38.2 9.7 0.00033 25.1 0.0 18 50-67 85-102 (107)
44 3tty_A Beta-GAL, beta-galactos 31.2 22 0.00076 28.7 2.0 20 48-67 462-481 (675)
45 1hqc_A RUVB; extended AAA-ATPa 31.1 1E+02 0.0035 20.8 5.1 40 33-77 174-213 (324)
46 2l9b_B MRNA 3'-END-processing 31.0 27 0.00092 21.0 1.9 29 50-78 7-41 (53)
47 3pxi_a Adapter protein MECA 1; 30.5 20 0.00068 23.1 1.3 16 48-63 95-110 (111)
48 1wr1_B Ubiquitin-like protein 30.2 48 0.0017 19.3 2.9 22 57-78 35-56 (58)
49 3h3h_A Uncharacterized snoal-l 30.2 17 0.00057 21.7 0.9 27 53-79 9-37 (122)
50 1rhc_A F420-dependent alcohol 29.7 23 0.00079 24.9 1.7 18 60-77 279-296 (330)
51 2k9i_A Plasmid PRN1, complete 29.1 64 0.0022 16.9 3.1 30 50-79 16-46 (55)
52 2dna_A Unnamed protein product 29.0 50 0.0017 20.1 2.9 21 58-78 38-58 (67)
53 1oh0_A Steroid delta-isomerase 28.9 25 0.00086 20.5 1.5 27 52-78 7-35 (131)
54 2bj7_A Nickel responsive regul 28.7 51 0.0017 21.5 3.1 30 50-79 10-41 (138)
55 1vg5_A RSGI RUH-014, rhomboid 28.1 56 0.0019 19.9 3.0 22 58-79 47-68 (73)
56 3ajm_A Programmed cell death p 27.6 38 0.0013 25.1 2.5 16 56-72 169-184 (213)
57 3i0y_A Putative polyketide cyc 27.5 15 0.00052 21.9 0.3 24 56-79 12-37 (140)
58 3ff2_A Uncharacterized cystati 26.7 21 0.00073 21.0 0.9 22 58-79 8-31 (117)
59 2dah_A Ubiquilin-3; UBA domain 26.6 63 0.0022 18.4 2.9 21 58-78 28-48 (54)
60 4aez_C MAD3, mitotic spindle c 26.4 1.5E+02 0.0053 21.4 5.6 48 31-78 95-143 (223)
61 2zuv_A Lacto-N-biose phosphory 26.3 31 0.001 29.9 2.1 26 42-67 513-538 (759)
62 3jtn_A YPBH, adapter protein M 26.0 11 0.00037 23.2 -0.6 15 48-62 76-90 (91)
63 3bos_A Putative DNA replicatio 25.6 69 0.0023 20.2 3.2 41 31-76 178-218 (242)
64 2dai_A Ubadc1, ubiquitin assoc 25.5 80 0.0027 19.5 3.5 40 31-79 29-68 (83)
65 1iqp_A RFCS; clamp loader, ext 25.4 1.5E+02 0.0052 19.7 5.2 29 46-76 185-213 (327)
66 1zc1_A Ubiquitin fusion degrad 25.3 41 0.0014 24.5 2.3 17 29-45 137-153 (208)
67 3fgy_A Uncharacterized NTF2-li 25.2 17 0.00059 21.5 0.3 25 55-79 8-34 (135)
68 1sxj_B Activator 1 37 kDa subu 24.5 95 0.0032 20.7 3.9 28 48-77 184-211 (323)
69 1au1_A Interferon-beta; helica 23.9 47 0.0016 22.9 2.4 8 56-63 120-127 (166)
70 1vhn_A Putative flavin oxidore 23.5 76 0.0026 22.7 3.5 42 37-79 199-251 (318)
71 1jhd_A Sulfate adenylyltransfe 23.5 88 0.003 24.2 4.0 34 31-64 360-393 (396)
72 3kxe_C Antitoxin protein PARD- 23.2 96 0.0033 19.3 3.5 26 50-75 10-37 (88)
73 2gxf_A Hypothetical protein YY 23.0 21 0.00072 21.8 0.4 27 50-76 1-29 (142)
74 1vlh_A Phosphopantetheine aden 23.0 74 0.0025 21.0 3.1 25 56-80 140-169 (173)
75 2dag_A Ubiquitin carboxyl-term 23.0 90 0.0031 18.7 3.3 25 55-79 24-49 (74)
76 3kts_A Glycerol uptake operon 22.8 57 0.002 23.1 2.6 26 52-77 139-171 (192)
77 3fh1_A Uncharacterized NTF2-li 22.4 25 0.00085 21.1 0.6 24 56-79 21-46 (129)
78 3pvs_A Replication-associated 22.2 1.4E+02 0.0048 22.7 4.9 43 32-76 170-216 (447)
79 2yuj_A Ubiquitin fusion degrad 22.1 37 0.0013 24.3 1.5 16 30-45 133-148 (190)
80 2gk3_A Putative cytoplasmic pr 22.1 39 0.0013 23.7 1.7 16 52-67 105-120 (256)
81 2cwb_A Chimera of immunoglobul 22.0 87 0.003 20.5 3.3 23 56-78 83-105 (108)
82 3er7_A Uncharacterized NTF2-li 22.0 11 0.00039 24.4 -1.1 23 56-78 6-35 (131)
83 2ekk_A UBA domain from E3 ubiq 22.0 1E+02 0.0034 16.5 3.1 38 31-78 9-46 (47)
84 3g8z_A Protein of unknown func 21.9 28 0.00096 21.7 0.8 23 57-79 25-49 (148)
85 1veg_A NEDD8 ultimate buster-1 21.8 1E+02 0.0035 19.3 3.4 40 31-79 29-68 (83)
86 2lbc_A Ubiquitin carboxyl-term 21.4 83 0.0028 20.0 3.0 23 57-79 95-117 (126)
87 4h3u_A Hypothetical protein; s 21.4 25 0.00086 21.9 0.5 22 57-78 30-53 (158)
88 3ec9_A Uncharacterized NTF2-li 21.4 25 0.00086 21.1 0.5 23 56-78 16-40 (140)
89 2z26_A Dihydroorotase, dhoase; 21.2 61 0.0021 23.2 2.6 24 55-78 275-298 (347)
90 2bng_A MB2760; epoxide hydrola 21.2 30 0.001 21.2 0.8 24 56-79 19-44 (149)
91 2kw0_A CCMH protein; oxidoredu 21.2 95 0.0033 19.8 3.2 25 55-79 46-70 (90)
92 2wvf_A Hpnikr, putative nickel 21.1 84 0.0029 21.0 3.1 30 50-79 17-48 (148)
93 2dkl_A Trinucleotide repeat co 21.0 99 0.0034 19.1 3.3 23 57-79 38-60 (85)
94 3put_A Hypothetical conserved 21.0 40 0.0014 21.6 1.4 19 52-70 140-158 (166)
95 3l4a_A Odorant binding protein 20.6 84 0.0029 20.3 3.0 16 30-45 2-17 (141)
96 1ohp_A Steroid delta-isomerase 20.5 25 0.00086 19.8 0.3 26 53-78 6-33 (125)
97 2hl7_A Cytochrome C-type bioge 20.4 1E+02 0.0035 19.3 3.2 26 54-79 48-73 (84)
98 1vej_A Riken cDNA 4931431F19; 20.2 1E+02 0.0035 18.8 3.1 21 58-78 48-68 (74)
99 3ebt_A Uncharacterized NTF2-li 20.2 28 0.00094 20.5 0.5 24 56-79 7-32 (132)
100 2chq_A Replication factor C sm 20.1 1.6E+02 0.0054 19.5 4.3 32 43-76 174-205 (319)
No 1
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=77.72 E-value=1.8 Score=27.18 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 54 IFSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 54 If~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
|..+|+. .++++|+||+-|-|+.
T Consensus 32 i~~~L~~---y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 32 ILACLEY---YHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHH---TTTCHHHHHHHHHTTC
T ss_pred HHHHHHH---hCCCHHHHHHHHHccC
Confidence 4455555 4899999999998863
No 2
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=67.58 E-value=6.6 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh
Q psy15694 57 QLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 57 ~lkrYfqaGG~PE~VI~lLSen 78 (81)
++-=-+.+||+|+.|++-||.=
T Consensus 34 yIvlLisNg~s~~sivqELssL 55 (104)
T 2v75_A 34 YIVLLIVNGGTVESVVDELASL 55 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhheeeeCCCChHHHHHHHHHH
Confidence 3444578999999999999864
No 3
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=67.36 E-value=2.7 Score=23.63 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 56 SQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI~lLSen 78 (81)
..++-|+.+|++.+...+.|-+|
T Consensus 20 ~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 20 LVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 45889999999999999999765
No 4
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=62.43 E-value=8.5 Score=20.53 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh
Q psy15694 57 QLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 57 ~lkrYfqaGG~PE~VI~lLSen 78 (81)
.++.+..++|+++..++.|-+|
T Consensus 21 a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 21 AHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHhCcCHHHHHHHHHcC
Confidence 4667778899999999999765
No 5
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=52.22 E-value=20 Score=25.70 Aligned_cols=43 Identities=7% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 34 ~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSen 78 (81)
...++.+..+...|-- .....+|+.||.+||+....-+.|--|
T Consensus 180 ~~~~~~L~pL~~~d~~--~~ll~TL~~yl~~~~~~~~tA~~L~iH 222 (262)
T 3onq_A 180 ELYRNVYQVLRGENPD--DPTYLTVSTFLKYGSSLENTAKELNVH 222 (262)
T ss_dssp HHHHHTHHHHHTTCTT--CHHHHHHHHHHHTTTCHHHHHHHHTSC
T ss_pred HHHHHHHhHhhhCCCc--hHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 3344445555554432 467899999999999999888777433
No 6
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=50.83 E-value=29 Score=24.00 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 30 e~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSen 78 (81)
.++..++.-|......++|-+.=.|.-.|+.|.+- .|+.|+..|.+|
T Consensus 162 ~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~--~p~~v~~fl~~~ 208 (232)
T 3jxy_A 162 MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT--NPDVVWEYVQNN 208 (232)
T ss_dssp CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT--CHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHC
Confidence 35778888899999999999999999999999988 999999999887
No 7
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=50.56 E-value=32 Score=21.20 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 46 PDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 46 ~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
......|.....|-++ +||+|-.++++|.
T Consensus 201 ~~~~~~~~~~~~l~~~--~~G~~~~~~~~~~ 229 (250)
T 1njg_A 201 EHIAHEPRALQLLARA--AEGSLRDALSLTD 229 (250)
T ss_dssp TTCCBCHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 3445678888777765 4999999998874
No 8
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=49.18 E-value=5.6 Score=29.35 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHcCCCH
Q psy15694 51 EPGIFSQLKRYFQAGGNP 68 (81)
Q Consensus 51 EP~If~~lkrYfqaGG~P 68 (81)
-|..+..|++||+.+|+|
T Consensus 122 ~~~~~~~l~~hF~~~g~P 139 (218)
T 2z84_A 122 LRGEEERLYSHFTTGGGP 139 (218)
T ss_dssp TTTCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 367889999999999877
No 9
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.07 E-value=20 Score=21.09 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 57 QLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 57 ~lkrYfqaGG~PE~VI~lLSeny 79 (81)
.++.+..++|+++..++.|-+|.
T Consensus 26 a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 26 SRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHCC
Confidence 36788889999999999998875
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=48.87 E-value=19 Score=20.31 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
..++...++||+++..|+.|-++.
T Consensus 28 ~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 28 ANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 346777889999999999997763
No 11
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=48.10 E-value=16 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 56 SQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI~lLSen 78 (81)
..++...++||+++..|+.|-.|
T Consensus 29 ~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHhC
Confidence 34777889999999999998654
No 12
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=48.08 E-value=39 Score=23.19 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 30 e~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
.++..++.=|......++|.+.=+|.-.|+.|.+- .|+.|+..|-
T Consensus 155 ~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~--~~~~v~~fl~ 199 (220)
T 2b6c_A 155 TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT--NPQWVEELMK 199 (220)
T ss_dssp CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh--CHHHHHHHHh
Confidence 46788898899999999999999999999999988 9999999993
No 13
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=43.84 E-value=11 Score=24.01 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=18.5
Q ss_pred cchhHHHHHHHHHHc--CCCHHHHHHHHHhh
Q psy15694 50 MEPGIFSQLKRYFQA--GGNPEQVIELMIID 78 (81)
Q Consensus 50 MEP~If~~lkrYfqa--GG~PE~VI~lLSen 78 (81)
|....-..+++|+++ .|+++.+..|++++
T Consensus 21 m~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D 51 (163)
T 1z1s_A 21 GHMNAKEILVHSLRLLENGDARGWCDLFHPE 51 (163)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred CchhHHHHHHHHHHHHHCCCHHHHHHHCCCC
Confidence 334445556777764 67777777777665
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.39 E-value=23 Score=20.43 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
...+...+++|+++..++.|-+|.
T Consensus 25 ~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 25 QALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCC
Confidence 345666778999999999998763
No 15
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=43.07 E-value=15 Score=24.04 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 53 GIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 53 ~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
+|.+.|..|++.+|+ ++|-++++
T Consensus 27 ~iid~l~eyh~~~~~-~~~e~l~~ 49 (90)
T 4err_A 27 GILDQLDLVHQAKGR-DQIAASFE 49 (90)
T ss_dssp HHHHHHHHHHHCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcch-HHHHHHHH
Confidence 489999999999998 66666544
No 16
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=42.96 E-value=10 Score=28.83 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=21.1
Q ss_pred HHHHhcCCCCcccchhHHHHHHHHHHcCC--CHHHHH
Q psy15694 38 ECLEKFSTPDYIMEPGIFSQLKRYFQAGG--NPEQVI 72 (81)
Q Consensus 38 eCl~~fs~~DyIMEP~If~~lkrYfqaGG--~PE~VI 72 (81)
...+.|+-.+|-+==..+..||+||-||| -|..++
T Consensus 272 ~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~L 308 (341)
T 3swh_A 272 EEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFL 308 (341)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 34455666666666677899999999999 444444
No 17
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=40.47 E-value=9.8 Score=23.80 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=14.4
Q ss_pred cccchhHHHHHHHHHH
Q psy15694 48 YIMEPGIFSQLKRYFQ 63 (81)
Q Consensus 48 yIMEP~If~~lkrYfq 63 (81)
-||+-..+.+|++||.
T Consensus 82 ~Ii~~~Al~~l~~yF~ 97 (98)
T 3jtp_A 82 LIISEHALETIKKHFA 97 (98)
T ss_dssp EEECSBHHHHHHHHHC
T ss_pred hhchhhHHHHHHHHcC
Confidence 5889999999999995
No 18
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=40.17 E-value=26 Score=22.03 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCC-----HHHHHHHHHhhcc
Q psy15694 56 SQLKRYFQAGGN-----PEQVIELMIIDNM 80 (81)
Q Consensus 56 ~~lkrYfqaGG~-----PE~VI~lLSeny~ 80 (81)
+.+|+.++.|++ |+.|++.|.+||+
T Consensus 129 T~IR~~i~~g~~~~~~vP~~V~~yI~~~~~ 158 (158)
T 1qjc_A 129 SLVKEVARHQGDVTHFLPENVHQALMAKLA 158 (158)
T ss_dssp HHHHHHHHTTCCCGGGSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChhHhCCHHHHHHHHHhhC
Confidence 567888899984 8899999988874
No 19
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=39.98 E-value=10 Score=22.46 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 53 GIFSQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 53 ~If~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
..-..+++|+.| .|..+.+..++++++
T Consensus 4 ~~~~~v~~~~~a~n~~D~~~~~~~~a~D~ 32 (123)
T 2k54_A 4 EIELPVQKQLEAYNARDIDAFMAWWADDC 32 (123)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCHHHHHhhcCCce
Confidence 344557777775 678888888877664
No 20
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.81 E-value=82 Score=21.70 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHhcCCCCccc-chhHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 31 NPQEVLNECLEKFSTPDYIM-EPGIFSQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIM-EP~If~~lkrYfqaGG~PE~VI~lLSen 78 (81)
.-..+|+.|+++|......- -|--...--.|...=++|.+|.+.|..|
T Consensus 41 ~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~if~~L~~~ 89 (164)
T 2wvi_A 41 NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQ 89 (164)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHHHHHHHHHC
Confidence 45779999999998866444 4444444446777778999999988765
No 21
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=38.98 E-value=31 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCC-----HHHHHHHHHhhcc
Q psy15694 56 SQLKRYFQAGGN-----PEQVIELMIIDNM 80 (81)
Q Consensus 56 ~~lkrYfqaGG~-----PE~VI~lLSeny~ 80 (81)
+.+|+.++.|++ |+.|.+.|.+||+
T Consensus 130 T~IR~~l~~G~~~~~~vP~~V~~~I~~~~~ 159 (160)
T 1od6_A 130 TMVKEIARYGGDVSKLVPPATLRALKAKLG 159 (160)
T ss_dssp HHHHHHHHTTCCCTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHCCHHHHHHHHHHhc
Confidence 567888888885 8999999999986
No 22
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=38.62 E-value=26 Score=19.40 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHcCCCHHHHHHHHHh
Q psy15694 58 LKRYFQAGGNPEQVIELMII 77 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lLSe 77 (81)
++..-.++|+++..|+.|-+
T Consensus 26 ~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 26 VAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHc
Confidence 66667899999999999864
No 23
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=38.08 E-value=42 Score=17.15 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHc-CCCHHHHHHHHHhhc
Q psy15694 50 MEPGIFSQLKRYFQA-GGNPEQVIELMIIDN 79 (81)
Q Consensus 50 MEP~If~~lkrYfqa-GG~PE~VI~lLSeny 79 (81)
+.+.++..|.++.+. |-+.+++|+..-..|
T Consensus 9 l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~ 39 (45)
T 2cpg_A 9 LSESVLENLEKMAREMGLSKSAMISVALENY 39 (45)
T ss_dssp EEHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468899999999975 669999998776655
No 24
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.57 E-value=36 Score=20.48 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
+++.|.+=+..-|.. -...+.+..+||+++..|+.|-+|.
T Consensus 29 ~~~~v~~L~~MGF~~---------~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAE---------DVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHTCCH---------HHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCH---------HHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 455554444444432 2335677789999999999998764
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=36.95 E-value=41 Score=16.99 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=12.7
Q ss_pred HHHHHHcCCCHHHHHHHH
Q psy15694 58 LKRYFQAGGNPEQVIELM 75 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lL 75 (81)
.+-+..++|+++..|+.|
T Consensus 22 ~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 22 AQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 455666788888887766
No 26
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=35.95 E-value=46 Score=21.60 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=24.2
Q ss_pred cchhHHHHHHHHHHcCC--CHHHHHHHHHhhc
Q psy15694 50 MEPGIFSQLKRYFQAGG--NPEQVIELMIIDN 79 (81)
Q Consensus 50 MEP~If~~lkrYfqaGG--~PE~VI~lLSeny 79 (81)
+.+.+...|.+|.+.|| +.+++|+-+-..|
T Consensus 8 Lp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~ 39 (133)
T 2hza_A 8 LDDDLLETLDSLSQRRGYNNRSEAIRDILRSA 39 (133)
T ss_dssp ECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45788899999999999 8999998655443
No 27
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=35.51 E-value=22 Score=22.46 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHH-hcCCC
Q psy15694 26 DDPMENPQEVLNECLE-KFSTP 46 (81)
Q Consensus 26 ~~~~e~~~~vl~eCl~-~fs~~ 46 (81)
+..+|||+.||.|=+. -|++|
T Consensus 29 d~~EedPesILDeHvsRV~ktP 50 (70)
T 1qz7_B 29 DAHEENPESILDEHVQRVMKTP 50 (70)
T ss_pred cccccChHHHHHHHHHHHHhCc
Confidence 5678899999998554 34443
No 28
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=35.02 E-value=47 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHcCC--CHHHHHHHHHh
Q psy15694 51 EPGIFSQLKRYFQAGG--NPEQVIELMII 77 (81)
Q Consensus 51 EP~If~~lkrYfqaGG--~PE~VI~lLSe 77 (81)
--.+++.+..+++.|. +|++++++|..
T Consensus 150 ~~~~~~~i~~W~~~~~~~s~eei~~~l~~ 178 (185)
T 3o60_A 150 ARMILSLAAEIQQSNKDYTNDQLVELIQE 178 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567788889999887 89999998864
No 29
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.84 E-value=56 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.2
Q ss_pred cchhHHHHHHHHHHcCCCHHHHHHHHHh
Q psy15694 50 MEPGIFSQLKRYFQAGGNPEQVIELMII 77 (81)
Q Consensus 50 MEP~If~~lkrYfqaGG~PE~VI~lLSe 77 (81)
..+.+...|-+ .+||+|-.++++|..
T Consensus 181 ~~~~~~~~l~~--~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 181 ITEDGLEALIY--ISGGDFRKAINALQG 206 (226)
T ss_dssp BCHHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 67777777765 459999999998864
No 30
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.26 E-value=35 Score=18.87 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=16.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhh
Q psy15694 58 LKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lLSen 78 (81)
++..-.+||+++..|+.|-++
T Consensus 26 ~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 26 VAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHTTTSCSHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHhC
Confidence 455667889999999988654
No 31
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=34.09 E-value=15 Score=30.19 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHcCCCH
Q psy15694 52 PGIFSQLKRYFQAGGNP 68 (81)
Q Consensus 52 P~If~~lkrYfqaGG~P 68 (81)
|..+..|.+||+.+|+|
T Consensus 392 ~~l~~~L~~hF~~~GtP 408 (481)
T 3oqc_A 392 ASQGRELANHFQNVGTP 408 (481)
T ss_dssp GGGHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHhccCCC
Confidence 67899999999999988
No 32
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=34.08 E-value=13 Score=22.39 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 53 GIFSQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 53 ~If~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
.+-..+++|++| .|+++.+..||+++.
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~ 39 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENA 39 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCE
Confidence 455667888775 678888888877654
No 33
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=33.84 E-value=13 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 53 GIFSQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 53 ~If~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
..-..+++||+| .|+++.+..||++++
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~ 58 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENA 58 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCE
Confidence 455667888875 788999999998765
No 34
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=33.25 E-value=13 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=16.4
Q ss_pred HHHHHHHH---cCCCHHHHHHHHHhhcc
Q psy15694 56 SQLKRYFQ---AGGNPEQVIELMIIDNM 80 (81)
Q Consensus 56 ~~lkrYfq---aGG~PE~VI~lLSeny~ 80 (81)
..+++||. +.|+++.+.+++++++.
T Consensus 10 ~~v~~~~~~~~~~~d~~~~~~~~a~d~~ 37 (146)
T 3f9s_A 10 EILTQFTREVWSEGNIEASDKYIAPKYT 37 (146)
T ss_dssp HHHHHHHHHHTTTCCGGGHHHHEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCee
Confidence 45667765 36677777777776653
No 35
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=33.19 E-value=29 Score=19.24 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=11.3
Q ss_pred HcCCCHHHHHHHHHh
Q psy15694 63 QAGGNPEQVIELMII 77 (81)
Q Consensus 63 qaGG~PE~VI~lLSe 77 (81)
=.||+||++-.|--+
T Consensus 9 wvggtpeelkklkee 23 (36)
T 2ki0_A 9 WVGGTPEELKKLKEE 23 (36)
T ss_dssp CBCCCHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHH
Confidence 479999998776543
No 36
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.07 E-value=50 Score=19.25 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=19.4
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHhhc
Q psy15694 55 FSQLKRYFQAG-GNPEQVIELMIIDN 79 (81)
Q Consensus 55 f~~lkrYfqaG-G~PE~VI~lLSeny 79 (81)
-...|.+..+| |+++..++.|-+|-
T Consensus 24 ~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 24 GRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 34467777885 89999999998763
No 37
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.80 E-value=44 Score=19.54 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHhhc
Q psy15694 55 FSQLKRYFQAGG-NPEQVIELMIIDN 79 (81)
Q Consensus 55 f~~lkrYfqaGG-~PE~VI~lLSeny 79 (81)
....|.+..+|| +++..++.|-+|-
T Consensus 34 ~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 34 ARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 345788888998 9999999997763
No 38
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=32.77 E-value=22 Score=24.14 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=13.0
Q ss_pred cccchhHHHHHHHHHHcCCCH
Q psy15694 48 YIMEPGIFSQLKRYFQAGGNP 68 (81)
Q Consensus 48 yIMEP~If~~lkrYfqaGG~P 68 (81)
|+..|+|| +||.+.-|.+
T Consensus 41 fLvsP~IF---~~Y~~e~~~~ 58 (135)
T 2ipq_X 41 FISVPGVF---FLFLKSHSRS 58 (135)
T ss_dssp EEETTHHH---HHHHHHC---
T ss_pred EEEChHHH---HHHHHHcCcc
Confidence 56699999 8999988877
No 39
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=32.41 E-value=21 Score=20.86 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHhh
Q psy15694 53 GIFSQLKRYFQA--GGNPEQVIELMIID 78 (81)
Q Consensus 53 ~If~~lkrYfqa--GG~PE~VI~lLSen 78 (81)
.|-..+.+|++| -|.++.+..|++++
T Consensus 12 ~i~~~~~~~~~a~~~~D~~~~~~l~a~D 39 (135)
T 3d9r_A 12 VIEAAAIAYLTAFNRADIPAVIATYTDD 39 (135)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 366778888887 78888888887654
No 40
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.23 E-value=94 Score=21.13 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 33 QEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 33 ~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
.++.+-+.+.+.....-+.|.+...|-++ ++|+|-.++++|.
T Consensus 195 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~--~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 195 SNAIDRLRFISEQENVKCDDGVLERILDI--SAGDLRRGITLLQ 236 (353)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHH--TSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 44444444444444455778888777776 5699999888874
No 41
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A
Probab=32.20 E-value=35 Score=24.05 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=26.3
Q ss_pred cCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 43 FSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 43 fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
-||||-.|- ..+||=..+-|-|-.+|+.|-+|-
T Consensus 45 ISTPD~~lq----~mir~~L~~sGCP~hiln~l~e~c 77 (144)
T 2fzp_A 45 ISTPDAVLQ----AVIKRSLVESGCPASIVNELIENA 77 (144)
T ss_dssp ESSCCHHHH----HHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred ccCccHHHH----HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 467776653 357888899999999999998873
No 42
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=32.05 E-value=34 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
..|+-||.|+++.+..+++|-++.
T Consensus 146 ~viqA~~ac~knee~Aan~L~~~~ 169 (171)
T 2qsf_X 146 LVIQVYFACDKNEEAAANILFSDH 169 (171)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcc
Confidence 347899999999999999998764
No 43
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=38.22 E-value=9.7 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.691 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHHcCCC
Q psy15694 50 MEPGIFSQLKRYFQAGGN 67 (81)
Q Consensus 50 MEP~If~~lkrYfqaGG~ 67 (81)
+.|.|+..|..||+.|+.
T Consensus 85 ikp~V~~~I~~~~~sG~p 102 (107)
T 2ltm_A 85 LKPDIYATIMDFFASGLP 102 (107)
Confidence 589999999999999863
No 44
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=31.22 E-value=22 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.898 Sum_probs=18.1
Q ss_pred cccchhHHHHHHHHHHcCCC
Q psy15694 48 YIMEPGIFSQLKRYFQAGGN 67 (81)
Q Consensus 48 yIMEP~If~~lkrYfqaGG~ 67 (81)
|+|.+.....|++|+++||+
T Consensus 462 ~~~~~~~~~~L~~yV~~GG~ 481 (675)
T 3tty_A 462 YMVKPGFAERVERFVAQGGT 481 (675)
T ss_dssp CBCCTTHHHHHHHHHHTTCE
T ss_pred EecCHHHHHHHHHHHhcCCE
Confidence 67789999999999999994
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=31.10 E-value=1e+02 Score=20.78 Aligned_cols=40 Identities=8% Similarity=-0.032 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHh
Q psy15694 33 QEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMII 77 (81)
Q Consensus 33 ~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSe 77 (81)
..+++....+. ..-+.|.+...|.+| ++|+|-.+.++|..
T Consensus 174 ~~~l~~~~~~~---~~~~~~~~~~~l~~~--~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 174 AQGVMRDARLL---GVRITEEAALEIGRR--SRGTMRVAKRLFRR 213 (324)
T ss_dssp HHHHHHHHHTT---TCCCCHHHHHHHHHH--SCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCCHHHHHHHHHH--ccCCHHHHHHHHHH
Confidence 44455544433 344788999999998 59999999888753
No 46
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=31.04 E-value=27 Score=21.00 Aligned_cols=29 Identities=10% Similarity=0.421 Sum_probs=23.2
Q ss_pred cchhHHHHH-----HHHHHcCC-CHHHHHHHHHhh
Q psy15694 50 MEPGIFSQL-----KRYFQAGG-NPEQVIELMIID 78 (81)
Q Consensus 50 MEP~If~~l-----krYfqaGG-~PE~VI~lLSen 78 (81)
.-|.|++.| |.||+.-= .|+.+|+.|+++
T Consensus 7 iP~eI~dLL~vLPKRQYFK~~~ld~~klv~~L~dq 41 (53)
T 2l9b_B 7 LPTEVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQ 41 (53)
T ss_dssp CCHHHHHHHHHSBCGGGGCSSCCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcchHhhhcccccCHHHHHHHHHhc
Confidence 457788887 47998765 899999999875
No 47
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.46 E-value=20 Score=23.07 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=14.4
Q ss_pred cccchhHHHHHHHHHH
Q psy15694 48 YIMEPGIFSQLKRYFQ 63 (81)
Q Consensus 48 yIMEP~If~~lkrYfq 63 (81)
-||+-..+.+|++||.
T Consensus 95 ~Ii~~~Al~~L~~yF~ 110 (111)
T 3pxi_a 95 LIISEHALETIKKHFA 110 (111)
T ss_dssp EEECSBHHHHHHHHHC
T ss_pred hhchhhHHHHHHHHcC
Confidence 5889999999999994
No 48
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.24 E-value=48 Score=19.28 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh
Q psy15694 57 QLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 57 ~lkrYfqaGG~PE~VI~lLSen 78 (81)
.++..-+++|+++..|+.|-.+
T Consensus 35 ~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 35 NVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHhC
Confidence 3667778999999999999764
No 49
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=30.15 E-value=17 Score=21.70 Aligned_cols=27 Identities=4% Similarity=-0.043 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 53 GIFSQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 53 ~If~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
.+-..+++|++| .|+++.+..|++++.
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~ 37 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGF 37 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCCE
Confidence 345567888887 788988888877653
No 50
>1rhc_A F420-dependent alcohol dehydrogenase; (alpha, beta)8 barrel, oxidoreductase; HET: F42; 1.80A {Methanoculleus thermophilus} SCOP: c.1.16.3
Probab=29.68 E-value=23 Score=24.93 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=14.0
Q ss_pred HHHHcCCCHHHHHHHHHh
Q psy15694 60 RYFQAGGNPEQVIELMII 77 (81)
Q Consensus 60 rYfqaGG~PE~VI~lLSe 77 (81)
..+..+|+|++|++.|-+
T Consensus 279 ~~~~~~Gtpe~v~~~l~~ 296 (330)
T 1rhc_A 279 ENYMCATDAEEMIKEIER 296 (330)
T ss_dssp HHSEEESSHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHH
Confidence 344678999999998854
No 51
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=29.15 E-value=64 Score=16.92 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHc-CCCHHHHHHHHHhhc
Q psy15694 50 MEPGIFSQLKRYFQA-GGNPEQVIELMIIDN 79 (81)
Q Consensus 50 MEP~If~~lkrYfqa-GG~PE~VI~lLSeny 79 (81)
+.+.++..|+.|.+. |=+..++|+..-..|
T Consensus 16 l~~el~~~l~~~a~~~g~s~s~~ir~ai~~~ 46 (55)
T 2k9i_A 16 IPQEWHDRLMEIAKEKNLTLSDVCRLAIKEY 46 (55)
T ss_dssp ECHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 478899999999865 448899988776655
No 52
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.98 E-value=50 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhh
Q psy15694 58 LKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lLSen 78 (81)
++.-..++|+++..|+.|-++
T Consensus 38 ~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 38 LQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 677788999999999999765
No 53
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=28.91 E-value=25 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHc--CCCHHHHHHHHHhh
Q psy15694 52 PGIFSQLKRYFQA--GGNPEQVIELMIID 78 (81)
Q Consensus 52 P~If~~lkrYfqa--GG~PE~VI~lLSen 78 (81)
..+-..+++|+.| .|.++.+..|++++
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D 35 (131)
T 1oh0_A 7 QEVQGLMARYIELVDVGDIEAIVQMYADD 35 (131)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3455567777775 67888888887765
No 54
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=28.66 E-value=51 Score=21.52 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=23.8
Q ss_pred cchhHHHHHHHHHHcCC--CHHHHHHHHHhhc
Q psy15694 50 MEPGIFSQLKRYFQAGG--NPEQVIELMIIDN 79 (81)
Q Consensus 50 MEP~If~~lkrYfqaGG--~PE~VI~lLSeny 79 (81)
+.+.+...|.++.+.|| +.+++|+-+-..|
T Consensus 10 Lp~~l~~~ld~~v~~~~y~sRSe~Ir~air~~ 41 (138)
T 2bj7_A 10 IPSKLLEKFDQIIEEIGYENRSEAIRDLIRDF 41 (138)
T ss_dssp EEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35788899999999987 8999998655443
No 55
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.07 E-value=56 Score=19.92 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=17.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhhc
Q psy15694 58 LKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lLSeny 79 (81)
++.+.+++|+++..|+.|-.+.
T Consensus 47 ~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 47 EVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHCC
Confidence 5556678999999999997753
No 56
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=27.59 E-value=38 Score=25.10 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCHHHHH
Q psy15694 56 SQLKRYFQAGGNPEQVI 72 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI 72 (81)
++||.||+-| .+..|.
T Consensus 169 ~TLKeYFkd~-~~~~Vf 184 (213)
T 3ajm_A 169 DTLKTYFKDG-KAINVF 184 (213)
T ss_dssp HHHHHHHHHC-CHHHHH
T ss_pred HHHHHHHhcC-Ccceeh
Confidence 5899999965 777664
No 57
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=27.54 E-value=15 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=18.0
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
..+++||+| .|+++.+..+|++++
T Consensus 12 ~~v~~~~~a~~~~D~~~~~~l~a~D~ 37 (140)
T 3i0y_A 12 GLVQAYYEAFNRGDWDAMLAFLAEDV 37 (140)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHcCCcE
Confidence 457888875 578888888887764
No 58
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=26.70 E-value=21 Score=20.98 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 58 LKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 58 lkrYfqa--GG~PE~VI~lLSeny 79 (81)
+++|+.| .|..+.+..+++++|
T Consensus 8 v~~~~~a~n~~D~~~~~~~~a~D~ 31 (117)
T 3ff2_A 8 AKAMIAAYNAQDVDTYVSYMTDDA 31 (117)
T ss_dssp HHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHcccCHHHHHHhcCCcE
Confidence 5566553 566777766666655
No 59
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.60 E-value=63 Score=18.37 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhh
Q psy15694 58 LKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lLSen 78 (81)
++...+++|+.+..|++|-.+
T Consensus 28 ~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 28 LQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 666778999999999999764
No 60
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.39 E-value=1.5e+02 Score=21.44 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHhcCCCCccc-chhHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 31 NPQEVLNECLEKFSTPDYIM-EPGIFSQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIM-EP~If~~lkrYfqaGG~PE~VI~lLSen 78 (81)
.--.+|+.|+++|......- -|--...--.|...=..|.+|.+.|..|
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~ 143 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHH 143 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHC
Confidence 46789999999999886443 4444445556777778899988888765
No 61
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=26.25 E-value=31 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=21.3
Q ss_pred hcCCCCcccchhHHHHHHHHHHcCCC
Q psy15694 42 KFSTPDYIMEPGIFSQLKRYFQAGGN 67 (81)
Q Consensus 42 ~fs~~DyIMEP~If~~lkrYfqaGG~ 67 (81)
.||.+|.-..|.+...||+|+.+||+
T Consensus 513 alSgg~~W~~p~~~~aLR~fV~~GGg 538 (759)
T 2zuv_A 513 AFTGGDVWTNPKLVETVRAWVRGGGA 538 (759)
T ss_dssp TTTCGGGGGCHHHHHHHHHHHHTTCE
T ss_pred cccCccccCCHHHHHHHHHHHHcCCc
Confidence 46666666678899999999999995
No 62
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=26.05 E-value=11 Score=23.18 Aligned_cols=15 Identities=20% Similarity=0.405 Sum_probs=13.4
Q ss_pred cccchhHHHHHHHHH
Q psy15694 48 YIMEPGIFSQLKRYF 62 (81)
Q Consensus 48 yIMEP~If~~lkrYf 62 (81)
-||+-..+.+|++||
T Consensus 76 ~Ii~~~Al~~l~~yF 90 (91)
T 3jtn_A 76 LIMDGNAVETIQTHF 90 (91)
T ss_dssp EEESSCHHHHHHTTC
T ss_pred ccchhhHHHHHHHhC
Confidence 588899999999998
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=25.56 E-value=69 Score=20.15 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
.-.++++..+++. ..-+.|.+...|-++ ++|++-+++++|.
T Consensus 178 ~~~~~l~~~~~~~---~~~~~~~~~~~l~~~--~~g~~r~l~~~l~ 218 (242)
T 3bos_A 178 EKLAALQRRAAMR---GLQLPEDVGRFLLNR--MARDLRTLFDVLD 218 (242)
T ss_dssp GHHHHHHHHHHHT---TCCCCHHHHHHHHHH--TTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHHHH--ccCCHHHHHHHHH
Confidence 3455555544432 245678888888876 4889988888764
No 64
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.51 E-value=80 Score=19.47 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
+++.|.+=+..-|.. -...|.+..++|+++..++.|-+|.
T Consensus 29 ~e~~i~~L~~MGF~~---------~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEMGFPE---------NRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHHTCCH---------HHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHcCCCH---------HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 455554445545542 3456777788999999999998763
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=25.37 E-value=1.5e+02 Score=19.67 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=22.2
Q ss_pred CCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 46 PDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 46 ~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
...-+.|.+...|-++ +||+|-.++++|.
T Consensus 185 ~~~~~~~~~~~~l~~~--~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 185 EGLELTEEGLQAILYI--AEGDMRRAINILQ 213 (327)
T ss_dssp TTCEECHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 3445788888888765 4999999998875
No 66
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=25.31 E-value=41 Score=24.47 Aligned_cols=17 Identities=41% Similarity=0.786 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHhcCC
Q psy15694 29 MENPQEVLNECLEKFST 45 (81)
Q Consensus 29 ~e~~~~vl~eCl~~fs~ 45 (81)
-.||.+||+..||+|++
T Consensus 137 i~npKavLE~~LRnfst 153 (208)
T 1zc1_A 137 ISDPKAVLENVLRNFST 153 (208)
T ss_dssp SSCHHHHHHHHHHHCSC
T ss_pred ccCHHHHHHHHhhcCcc
Confidence 35899999999999986
No 67
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=25.19 E-value=17 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=16.7
Q ss_pred HHHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 55 FSQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 55 f~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
-..+++||++ .|+++.+..||++++
T Consensus 8 ~~~v~~~~~a~~~~d~~~~~~l~a~D~ 34 (135)
T 3fgy_A 8 VQIVKDFFAAMGRGDKKGLLAVSAEDI 34 (135)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCe
Confidence 3456666654 467888888877764
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.53 E-value=95 Score=20.67 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=20.7
Q ss_pred cccchhHHHHHHHHHHcCCCHHHHHHHHHh
Q psy15694 48 YIMEPGIFSQLKRYFQAGGNPEQVIELMII 77 (81)
Q Consensus 48 yIMEP~If~~lkrYfqaGG~PE~VI~lLSe 77 (81)
.-+.|.....|-++ +||+|-.++++|..
T Consensus 184 ~~~~~~~~~~l~~~--~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 184 VKYTNDGLEAIIFT--AEGDMRQAINNLQS 211 (323)
T ss_dssp CCBCHHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 34677777777665 49999999888753
No 69
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=23.94 E-value=47 Score=22.93 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=6.3
Q ss_pred HHHHHHHH
Q psy15694 56 SQLKRYFQ 63 (81)
Q Consensus 56 ~~lkrYfq 63 (81)
-.||+||+
T Consensus 120 l~lk~YF~ 127 (166)
T 1au1_A 120 LHLKRYYG 127 (166)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 35899997
No 70
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=23.51 E-value=76 Score=22.74 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=29.7
Q ss_pred HHHHHhcCCCCccc-------chhHHHHHHHHHHcCC----CHHHHHHHHHhhc
Q psy15694 37 NECLEKFSTPDYIM-------EPGIFSQLKRYFQAGG----NPEQVIELMIIDN 79 (81)
Q Consensus 37 ~eCl~~fs~~DyIM-------EP~If~~lkrYfqaGG----~PE~VI~lLSeny 79 (81)
.+|++.. -.|.|| .|.+|..++.++..|- ++++++++|.+.+
T Consensus 199 ~~~l~~~-gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 251 (318)
T 1vhn_A 199 KRALEES-GCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHL 251 (318)
T ss_dssp HHHHHHH-CCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 4455432 367666 8999999999998773 3467888887654
No 71
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=23.50 E-value=88 Score=24.23 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHc
Q psy15694 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQA 64 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqa 64 (81)
.-++|.+-.-+...-|++.|-|.|...|++|++.
T Consensus 360 SgT~IR~~L~~G~~pP~~f~~peV~~~I~~~~~~ 393 (396)
T 1jhd_A 360 SGTKVREMLGQGIAPPPEFSRPEVAKILMDYYQS 393 (396)
T ss_dssp CHHHHHHHHHTTCCCCTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcccCCHHHHHHHHHhhcc
Confidence 4566666666666788999999999999998763
No 72
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=23.22 E-value=96 Score=19.29 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHcCC--CHHHHHHHH
Q psy15694 50 MEPGIFSQLKRYFQAGG--NPEQVIELM 75 (81)
Q Consensus 50 MEP~If~~lkrYfqaGG--~PE~VI~lL 75 (81)
+-|.....++..+..|+ +.++||+-+
T Consensus 10 L~~~l~~~i~~~V~sG~Y~s~SEviR~~ 37 (88)
T 3kxe_C 10 LGDHFQAFIDSQVADGRYGSASEVIRAG 37 (88)
T ss_dssp CCHHHHHHHHHHHTTTSCSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35677888999999998 899998754
No 73
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=23.05 E-value=21 Score=21.82 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHHc--CCCHHHHHHHHH
Q psy15694 50 MEPGIFSQLKRYFQA--GGNPEQVIELMI 76 (81)
Q Consensus 50 MEP~If~~lkrYfqa--GG~PE~VI~lLS 76 (81)
|+-.|-..+.+|++| -|.++.+..|.+
T Consensus 1 ~~~~I~~l~~~~~~A~~~~D~d~~~~lfa 29 (142)
T 2gxf_A 1 MEQQLKDIISACDLAIQNEDFDTLMNYYS 29 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHTTSEE
T ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHhcC
Confidence 566677777888776 577776665544
No 74
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=23.05 E-value=74 Score=20.97 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCC-----HHHHHHHHHhhcc
Q psy15694 56 SQLKRYFQAGGN-----PEQVIELMIIDNM 80 (81)
Q Consensus 56 ~~lkrYfqaGG~-----PE~VI~lLSeny~ 80 (81)
+.+|+-++.|++ |+.|++.|.++|+
T Consensus 140 T~IR~~i~~g~~i~~lvP~~V~~yI~~~~~ 169 (173)
T 1vlh_A 140 SLVKEVALYGGDVTEWVPPEVARALNEKLK 169 (173)
T ss_dssp HHHHHHHHTTCCCTTTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCChhHcCCHHHHHHHHHHHh
Confidence 567888888884 8999999998885
No 75
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.98 E-value=90 Score=18.69 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHhhc
Q psy15694 55 FSQLKRYFQAGG-NPEQVIELMIIDN 79 (81)
Q Consensus 55 f~~lkrYfqaGG-~PE~VI~lLSeny 79 (81)
....|.+..+|| ++|..++.|-+|.
T Consensus 24 ~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 24 DACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 355788889998 7999999998763
No 76
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=22.75 E-value=57 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHH----cCC---CHHHHHHHHHh
Q psy15694 52 PGIFSQLKRYFQ----AGG---NPEQVIELMII 77 (81)
Q Consensus 52 P~If~~lkrYfq----aGG---~PE~VI~lLSe 77 (81)
|.++..+|+.+. ||| ++|+|.+.|+.
T Consensus 139 p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~a 171 (192)
T 3kts_A 139 PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIAS 171 (192)
T ss_dssp HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHc
Confidence 788888988876 677 89999998864
No 77
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=22.43 E-value=25 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=15.3
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
..+++|+++ .|+++.+..||++++
T Consensus 21 ~~v~~~~~a~~~~D~~~l~~l~a~D~ 46 (129)
T 3fh1_A 21 EIMRRFNDVFQLHDPAALPELIAEEC 46 (129)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHEEEEE
T ss_pred HHHHHHHHHHHccCHHHHHHhcCCCE
Confidence 446666653 567777777776654
No 78
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.21 E-value=1.4e+02 Score=22.67 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhc----CCCCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 32 PQEVLNECLEKF----STPDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 32 ~~~vl~eCl~~f----s~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
-..+++..+.++ ......+.+.+...|-+| ++|++-+++++|.
T Consensus 170 i~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le 216 (447)
T 3pvs_A 170 IEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLE 216 (447)
T ss_dssp HHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 345555555442 225677899999999999 8999999998875
No 79
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.09 E-value=37 Score=24.33 Aligned_cols=16 Identities=38% Similarity=0.735 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHhcCC
Q psy15694 30 ENPQEVLNECLEKFST 45 (81)
Q Consensus 30 e~~~~vl~eCl~~fs~ 45 (81)
.||++||+..||+|++
T Consensus 133 ~npKavLE~~Lrnfst 148 (190)
T 2yuj_A 133 TNPKAVLENALRNFAC 148 (190)
T ss_dssp SCHHHHHHHHHTTCCE
T ss_pred ccHHHHHHHHHhcCcc
Confidence 5899999999999985
No 80
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=22.08 E-value=39 Score=23.70 Aligned_cols=16 Identities=31% Similarity=0.806 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHcCCC
Q psy15694 52 PGIFSQLKRYFQAGGN 67 (81)
Q Consensus 52 P~If~~lkrYfqaGG~ 67 (81)
|.....|++|++.||.
T Consensus 105 ~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 105 PNALESIKEYVKNGGG 120 (256)
T ss_dssp CCHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHhCCE
Confidence 6667899999999984
No 81
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=22.03 E-value=87 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 56 SQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 56 ~~lkrYfqaGG~PE~VI~lLSen 78 (81)
..++....++|+++..|+.|-++
T Consensus 83 ~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 83 LSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc
Confidence 34677778999999999999754
No 82
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=21.97 E-value=11 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHHHHcC-------CCHHHHHHHHHhh
Q psy15694 56 SQLKRYFQAG-------GNPEQVIELMIID 78 (81)
Q Consensus 56 ~~lkrYfqaG-------G~PE~VI~lLSen 78 (81)
..|+|||... |+.+.++.|.+++
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~D 35 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDE 35 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCC
Confidence 3588997643 5688888887765
No 83
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=1e+02 Score=16.50 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSen 78 (81)
+++.|.+=+..-|.. -...+.+..+| +++..++.|-+|
T Consensus 9 ~~~~v~~L~~MGF~~---------~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTR---------EHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHHCCH---------HHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCH---------HHHHHHHHHcC-CHHHHHHHHHcC
Confidence 455555545555543 22355566675 999999998765
No 84
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=21.94 E-value=28 Score=21.68 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=13.5
Q ss_pred HHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 57 QLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 57 ~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
.+++||++ .|+.+.+.+||++++
T Consensus 25 ~v~~~~~a~~~gD~~~l~~l~a~D~ 49 (148)
T 3g8z_A 25 IAKSYITAIQTGDHATLGSIISPDV 49 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHhcCCHHHHHHHcCCCE
Confidence 45555553 456677777766654
No 85
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.78 E-value=1e+02 Score=19.32 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 31 ~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
..+.|.+=+..-|.. ....+..-++||+++..++.|-.|.
T Consensus 29 ~ee~I~~Lv~MGF~~---------~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 29 SQESINQLVYMGFDT---------VVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp CHHHHHHHHHHSCCH---------HHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCH---------HHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 345555545545432 2336667789999999999998764
No 86
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=21.44 E-value=83 Score=20.00 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 57 QLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 57 ~lkrYfqaGG~PE~VI~lLSeny 79 (81)
..+.+..+||+++..++.|-.|.
T Consensus 95 a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 95 AIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHhCC
Confidence 35666778999999999997653
No 87
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=21.40 E-value=25 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHc--CCCHHHHHHHHHhh
Q psy15694 57 QLKRYFQA--GGNPEQVIELMIID 78 (81)
Q Consensus 57 ~lkrYfqa--GG~PE~VI~lLSen 78 (81)
.+++|+.| .|.++.+..|++++
T Consensus 30 iv~~y~~A~n~~D~d~~~~l~a~D 53 (158)
T 4h3u_A 30 IVTAWAAAWTGTNPNALGTLFAAD 53 (158)
T ss_dssp HHHHHHHHHHSSCHHHHHTTEEEE
T ss_pred HHHHHHHHHHcCCHHHHHHHhccc
Confidence 36788875 78999999888765
No 88
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=21.37 E-value=25 Score=21.09 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=12.2
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHhh
Q psy15694 56 SQLKRYFQA--GGNPEQVIELMIID 78 (81)
Q Consensus 56 ~~lkrYfqa--GG~PE~VI~lLSen 78 (81)
..+++||+| .|+++.+..||+++
T Consensus 16 ~~v~~~~~a~~~gD~~~~~~l~a~D 40 (140)
T 3ec9_A 16 QIVADHYAASDRHDPAAMMADIAPA 40 (140)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHhcCCC
Confidence 345555552 45566666655554
No 89
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Probab=21.20 E-value=61 Score=23.22 Aligned_cols=24 Identities=4% Similarity=0.124 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhh
Q psy15694 55 FSQLKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 55 f~~lkrYfqaGG~PE~VI~lLSen 78 (81)
+..|-..++.+++.+++|+++|.|
T Consensus 275 l~l~~~~~~~~~sl~~~v~~~s~n 298 (347)
T 2z26_A 275 LGSYATVFEEMNALQHFEAFCSVN 298 (347)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHTH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhHh
Confidence 444444555688999999999987
No 90
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=21.18 E-value=30 Score=21.21 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=15.6
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
..+++|+++ .|+.+.+..||++++
T Consensus 19 ~~v~~f~~a~~~gD~~~l~~l~a~D~ 44 (149)
T 2bng_A 19 RAVEAFLNALQNEDFDTVDAALGDDL 44 (149)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHhcCCHHHHHHHcCCCE
Confidence 345666654 567777777777654
No 91
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=21.16 E-value=95 Score=19.85 Aligned_cols=25 Identities=12% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 55 FSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 55 f~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
=..+++-+++|=+.++||+.|-+.|
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3445667789999999999999887
No 92
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=21.12 E-value=84 Score=20.97 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHHHcCC--CHHHHHHHHHhhc
Q psy15694 50 MEPGIFSQLKRYFQAGG--NPEQVIELMIIDN 79 (81)
Q Consensus 50 MEP~If~~lkrYfqaGG--~PE~VI~lLSeny 79 (81)
+.+.+...|.++.+.+| +.+++|+-+...|
T Consensus 17 Lp~~ll~~lD~~v~~~~y~sRSe~Ir~Air~~ 48 (148)
T 2wvf_A 17 LQQNLLDELDNRIIKNGYSSRSELVRDMIREK 48 (148)
T ss_dssp EEHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 36788899999999988 8999998665443
No 93
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.02 E-value=99 Score=19.15 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 57 QLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 57 ~lkrYfqaGG~PE~VI~lLSeny 79 (81)
..+.+.+++|+++..++.|-+|.
T Consensus 38 a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 38 AEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHCc
Confidence 46677889999999999998763
No 94
>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*
Probab=20.95 E-value=40 Score=21.64 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHcCCCHHH
Q psy15694 52 PGIFSQLKRYFQAGGNPEQ 70 (81)
Q Consensus 52 P~If~~lkrYfqaGG~PE~ 70 (81)
+.+++.||+|...|++|-.
T Consensus 140 ~~~L~~L~~~le~~~~~~~ 158 (166)
T 3put_A 140 EIGLDNLELFLVRETSPIH 158 (166)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCCCcce
Confidence 4578899999999999854
No 95
>3l4a_A Odorant binding protein (AGAP010409-PA); all alpha helix, transport protein; 1.50A {Anopheles gambiae} PDB: 3l47_A 3l4l_A 3l5g_A 3pji_A 3qme_A
Probab=20.63 E-value=84 Score=20.28 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=12.0
Q ss_pred CChHHHHHHHHHhcCC
Q psy15694 30 ENPQEVLNECLEKFST 45 (81)
Q Consensus 30 e~~~~vl~eCl~~fs~ 45 (81)
++.+.|+++|.+.+.-
T Consensus 2 ~~~~~i~~eC~~~~~i 17 (141)
T 3l4a_A 2 DNNESVIESCSNAVQG 17 (141)
T ss_dssp --CHHHHHHHHHHSTT
T ss_pred CcchHHHHHHHHHcCC
Confidence 3578999999988765
No 96
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=20.53 E-value=25 Score=19.79 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHhh
Q psy15694 53 GIFSQLKRYFQA--GGNPEQVIELMIID 78 (81)
Q Consensus 53 ~If~~lkrYfqa--GG~PE~VI~lLSen 78 (81)
.+-..+++|++| .|.++.+..+++++
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D 33 (125)
T 1ohp_A 6 HMTAVVQRYVAALNAGDLDGIVALFADD 33 (125)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 455667788775 57788887777665
No 97
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=20.40 E-value=1e+02 Score=19.29 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy15694 54 IFSQLKRYFQAGGNPEQVIELMIIDN 79 (81)
Q Consensus 54 If~~lkrYfqaGG~PE~VI~lLSeny 79 (81)
.=..++.-+++|=+.++||+.|-+.|
T Consensus 48 lR~~V~~~l~~G~sd~eI~~~~v~RY 73 (84)
T 2hl7_A 48 LRKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 33445667789999999999999887
No 98
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.22 E-value=1e+02 Score=18.84 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHcCCCHHHHHHHHHhh
Q psy15694 58 LKRYFQAGGNPEQVIELMIID 78 (81)
Q Consensus 58 lkrYfqaGG~PE~VI~lLSen 78 (81)
++..-.++|+++..|+.|-.+
T Consensus 48 ~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 48 LQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHhC
Confidence 666678999999999999754
No 99
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=20.22 E-value=28 Score=20.46 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHhhc
Q psy15694 56 SQLKRYFQA--GGNPEQVIELMIIDN 79 (81)
Q Consensus 56 ~~lkrYfqa--GG~PE~VI~lLSeny 79 (81)
..+++||++ .|+++.+..+|++++
T Consensus 7 ~~v~~~~~a~~~~d~~~~~~l~a~D~ 32 (132)
T 3ebt_A 7 QTVRESYEAFHRRDLPGVLAALAPDV 32 (132)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhccCHHHHHHhcCCCE
Confidence 346666654 567788877777664
No 100
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.09 E-value=1.6e+02 Score=19.50 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=21.9
Q ss_pred cCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694 43 FSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMI 76 (81)
Q Consensus 43 fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS 76 (81)
+.....-+.|.....|-+ .+||++..++++|.
T Consensus 174 ~~~~~~~i~~~~l~~l~~--~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 174 CEKEGVKITEDGLEALIY--ISGGDFRKAINALQ 205 (319)
T ss_dssp HHTTCCCBCHHHHHHHHH--TTTTCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHH
Confidence 333444567887777764 45899998888874
Done!