BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>psy15694
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR
YFQAGGNPEQVIELMIIDNMA
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with TH1 TH1 TH1	protein from Drosophila melanogaster	1.5e-14
BLAST match view associations BLAST with TH1L TH1L TH1L Uncharacterized protein	protein from Gallus gallus	8.1e-13
BLAST match view associations BLAST with TH1L TH1L TH1L Negative elongation factor D	protein from Sus scrofa	2.2e-12
BLAST match view associations BLAST with NELFCD NELFCD NELFCD Negative elongation factor C/D	protein from Homo sapiens	7.7e-12
BLAST match view associations BLAST with NELFCD NELFCD NELFCD Negative elongation factor D	protein from Sus scrofa	9.8e-12
BLAST match view associations BLAST with NELFCD NELFCD NELFCD Uncharacterized protein	protein from Canis lupus familiaris	1.2e-11
BLAST match view associations BLAST with Nelfcd Nelfcd Nelfcd negative elongation factor complex member C/D, Th1l	protein from Mus musculus	1.3e-11
BLAST match view associations BLAST with TH1L TH1L TH1L Uncharacterized protein	protein from Bos taurus	1.3e-11
BLAST match view associations BLAST with nelfcd nelfcd nelfcd negative elongation factor complex member C/D	gene_product from Danio rerio	2.8e-09
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy15694
        (81 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0010416 - symbol:TH1 "TH1" species:7227 "Drosophil...   195  1.5e-14   1
UNIPROTKB|Q5ZIQ8 - symbol:TH1L "Uncharacterized protein" ...   179  8.1e-13   1
UNIPROTKB|F1NR08 - symbol:TH1L "Uncharacterized protein" ...   179  8.5e-13   1
UNIPROTKB|A5GFY5 - symbol:TH1L "Negative elongation facto...   168  2.2e-12   1
UNIPROTKB|Q8IXH7 - symbol:NELFCD "Negative elongation fac...   170  7.7e-12   1
UNIPROTKB|A5GFY4 - symbol:TH1L "Negative elongation facto...   169  9.8e-12   1
UNIPROTKB|F1PIH1 - symbol:TH1L "Uncharacterized protein" ...   168  1.2e-11   1
MGI|MGI:1926424 - symbol:Nelfcd "negative elongation fact...   168  1.3e-11   1
UNIPROTKB|F1MW69 - symbol:TH1L "Uncharacterized protein" ...   168  1.3e-11   1
ZFIN|ZDB-GENE-040426-720 - symbol:nelfcd "negative elonga...   146  2.8e-09   1


>FB|FBgn0010416 [details] [associations]
            symbol:TH1 "TH1" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=IDA] [GO:0017053
            "transcriptional repressor complex" evidence=IDA] [GO:0007070
            "negative regulation of transcription from RNA polymerase II
            promoter during mitosis" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0032021 "NELF complex" evidence=IPI] [GO:0034244
            "negative regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IDA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR006942 Pfam:PF04858 GO:GO:0017053
            GO:GO:0022008 EMBL:AE014298 GO:GO:0006351 GO:GO:0003723 EMBL:U34925
            GO:GO:0034244 GO:GO:0005703 GO:GO:0005705 GO:GO:0007070
            GO:GO:0032021 EMBL:AJ238377 EMBL:AJ238378 EMBL:L01790 EMBL:AY051957
            PIR:T13287 RefSeq:NP_573123.1 UniGene:Dm.3007 DIP:DIP-23874N
            IntAct:Q24134 MINT:MINT-937993 STRING:Q24134 PaxDb:Q24134
            EnsemblMetazoa:FBtr0074305 GeneID:32607 KEGG:dme:Dmel_CG9984
            UCSC:CG9984-RA CTD:32607 FlyBase:FBgn0010416 eggNOG:NOG72470
            GeneTree:ENSGT00390000001799 InParanoid:Q24134 KO:K15181
            OMA:CKSNFIL OrthoDB:EOG4KSN0W PhylomeDB:Q24134 GenomeRNAi:32607
            NextBio:779433 Bgee:Q24134 GermOnline:CG9984 PANTHER:PTHR12144
            Uniprot:Q24134
        Length = 578

 Score = 195 (73.7 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 33/46 (71%), Positives = 42/46 (91%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             +NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI ++
Sbjct:    26 DNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISML 71


>UNIPROTKB|Q5ZIQ8 [details] [associations]
            symbol:TH1L "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
            evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892
            GO:GO:0032021 eggNOG:NOG72470 GeneTree:ENSGT00390000001799
            KO:K15181 PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597
            OrthoDB:EOG4V170G HOGENOM:HOG000231762 EMBL:AADN02019004
            EMBL:AJ720726 IPI:IPI00572055 RefSeq:NP_001006294.1
            UniGene:Gga.21932 STRING:Q5ZIQ8 Ensembl:ENSGALT00000012086
            GeneID:419312 KEGG:gga:419312 InParanoid:Q5ZIQ8 NextBio:20822393
            Uniprot:Q5ZIQ8
        Length = 583

 Score = 179 (68.1 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:     4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
             DY +     W                E+  EV  ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct:     5 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 64

Query:    64 AGGNPEQVIELM 75
             AGG+PE VI+L+
Sbjct:    65 AGGSPENVIQLL 76


>UNIPROTKB|F1NR08 [details] [associations]
            symbol:TH1L "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
            evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892
            GO:GO:0032021 GeneTree:ENSGT00390000001799 OMA:CKSNFIL
            PANTHER:PTHR12144 EMBL:AADN02019004 IPI:IPI00821543
            Ensembl:ENSGALT00000039031 ArrayExpress:F1NR08 Uniprot:F1NR08
        Length = 602

 Score = 179 (68.1 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:     4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
             DY +     W                E+  EV  ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct:    24 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 83

Query:    64 AGGNPEQVIELM 75
             AGG+PE VI+L+
Sbjct:    84 AGGSPENVIQLL 95


>UNIPROTKB|A5GFY5 [details] [associations]
            symbol:TH1L "Negative elongation factor D" species:9823
            "Sus scrofa" [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634 GO:GO:0045892
            GeneTree:ENSGT00390000001799 PANTHER:PTHR12144 HOVERGEN:HBG052597
            EMBL:CR956646 UniGene:Ssc.12022 STRING:A5GFY5
            Ensembl:ENSSSCT00000033175 ArrayExpress:A5GFY5 Uniprot:A5GFY5
        Length = 291

 Score = 168 (64.2 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    22 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 67


>UNIPROTKB|Q8IXH7 [details] [associations]
            symbol:NELFCD "Negative elongation factor C/D" species:9606
            "Homo sapiens" [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006368 "transcription elongation from RNA polymerase II
            promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
            InterPro:IPR006942 Pfam:PF04858 Reactome:REACT_116125 GO:GO:0045892
            GO:GO:0016032 GO:GO:0006368 EMBL:AL109840 Reactome:REACT_1788
            GO:GO:0050434 Reactome:REACT_1892 GO:GO:0032021 eggNOG:NOG72470
            KO:K15181 OMA:CKSNFIL PANTHER:PTHR12144 EMBL:AJ238374 EMBL:AJ238375
            EMBL:AJ238379 EMBL:AF161479 EMBL:AK001316 EMBL:AK023310
            EMBL:AK023927 EMBL:AK293410 EMBL:BC014952 IPI:IPI00164949
            IPI:IPI00387090 IPI:IPI00759539 RefSeq:NP_945327.2
            UniGene:Hs.517148 ProteinModelPortal:Q8IXH7 DIP:DIP-34061N
            IntAct:Q8IXH7 MINT:MINT-260753 STRING:Q8IXH7 PhosphoSite:Q8IXH7
            DMDM:38372376 PaxDb:Q8IXH7 PRIDE:Q8IXH7 DNASU:51497
            Ensembl:ENST00000344018 Ensembl:ENST00000460601 GeneID:51497
            KEGG:hsa:51497 UCSC:uc002yag.3 CTD:51497 GeneCards:GC20P057556
            H-InvDB:HIX0138057 HGNC:HGNC:15934 MIM:605297 neXtProt:NX_Q8IXH7
            PharmGKB:PA38055 HOVERGEN:HBG052597 InParanoid:Q8IXH7
            OrthoDB:EOG4V170G PhylomeDB:Q8IXH7 GenomeRNAi:51497 NextBio:55171
            ArrayExpress:Q8IXH7 Bgee:Q8IXH7 Genevestigator:Q8IXH7
            GermOnline:ENSG00000101158 Uniprot:Q8IXH7
        Length = 590

 Score = 170 (64.9 bits), Expect = 7.7e-12, P = 7.7e-12
 Identities = 36/75 (48%), Positives = 43/75 (57%)

Query:     1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
             M++DY       W                E+  EV  ECL KFST DYIMEP IF+ LKR
Sbjct:    10 MDEDYYGSAAE-WGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68

Query:    61 YFQAGGNPEQVIELM 75
             YFQAGG+PE VI+L+
Sbjct:    69 YFQAGGSPENVIQLL 83


>UNIPROTKB|A5GFY4 [details] [associations]
            symbol:TH1L "Negative elongation factor D" species:9823
            "Sus scrofa" [GO:0032021 "NELF complex" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634 GO:GO:0045892
            GO:GO:0006351 eggNOG:NOG72470 GeneTree:ENSGT00390000001799
            KO:K15181 PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597
            OrthoDB:EOG4V170G HOGENOM:HOG000231762 EMBL:CR956646
            RefSeq:NP_001107170.1 UniGene:Ssc.12022 STRING:A5GFY4
            Ensembl:ENSSSCT00000008248 Ensembl:ENSSSCT00000034403
            GeneID:100134985 KEGG:ssc:100134985 ArrayExpress:A5GFY4
            Uniprot:A5GFY4
        Length = 590

 Score = 169 (64.5 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 36/75 (48%), Positives = 43/75 (57%)

Query:     1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
             M++DY       W                E+  EV  ECL KFST DYIMEP IF+ LKR
Sbjct:    10 MDEDYFGSAAE-WGDEADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68

Query:    61 YFQAGGNPEQVIELM 75
             YFQAGG+PE VI+L+
Sbjct:    69 YFQAGGSPENVIQLL 83


>UNIPROTKB|F1PIH1 [details] [associations]
            symbol:TH1L "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR006942 Pfam:PF04858 GO:GO:0005634
            GO:GO:0045892 GeneTree:ENSGT00390000001799 OMA:CKSNFIL
            PANTHER:PTHR12144 EMBL:AAEX03014054 Ensembl:ENSCAFT00000019342
            Uniprot:F1PIH1
        Length = 564

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    10 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 55


>MGI|MGI:1926424 [details] [associations]
            symbol:Nelfcd "negative elongation factor complex member
            C/D, Th1l" species:10090 "Mus musculus" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
            evidence=ISO] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR006942 Pfam:PF04858
            MGI:MGI:1926424 GO:GO:0045892 GO:GO:0006351 GO:GO:0032021
            eggNOG:NOG72470 GeneTree:ENSGT00390000001799 KO:K15181
            PANTHER:PTHR12144 CTD:51497 HOVERGEN:HBG052597 OrthoDB:EOG4V170G
            EMBL:AJ238741 EMBL:AJ238742 EMBL:AJ238743 EMBL:AK010360
            EMBL:AK049418 EMBL:AL844534 EMBL:BC006959 EMBL:BC031747
            IPI:IPI00395078 RefSeq:NP_065605.2 UniGene:Mm.271709 STRING:Q922L6
            PhosphoSite:Q922L6 PaxDb:Q922L6 PRIDE:Q922L6
            Ensembl:ENSMUST00000109075 GeneID:57314 KEGG:mmu:57314
            UCSC:uc008ofc.1 HOGENOM:HOG000231762 ChiTaRS:TH1L NextBio:313663
            Bgee:Q922L6 CleanEx:MM_TH1L Genevestigator:Q922L6
            GermOnline:ENSMUSG00000016253 Uniprot:Q922L6
        Length = 591

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    39 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 84


>UNIPROTKB|F1MW69 [details] [associations]
            symbol:TH1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0032021 "NELF complex" evidence=IEA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR006942 Pfam:PF04858 GO:GO:0045892 GO:GO:0032021
            GeneTree:ENSGT00390000001799 OMA:CKSNFIL PANTHER:PTHR12144
            EMBL:DAAA02036315 IPI:IPI01003013 Ensembl:ENSBTAT00000025006
            Uniprot:F1MW69
        Length = 600

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    48 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 93


>ZFIN|ZDB-GENE-040426-720 [details] [associations]
            symbol:nelfcd "negative elongation factor complex
            member C/D" species:7955 "Danio rerio" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR006942 Pfam:PF04858
            ZFIN:ZDB-GENE-040426-720 GO:GO:0005634 GO:GO:0045892
            eggNOG:NOG72470 KO:K15181 PANTHER:PTHR12144 CTD:51497
            HOVERGEN:HBG052597 OrthoDB:EOG4V170G HOGENOM:HOG000231762
            EMBL:BC045357 IPI:IPI00770521 RefSeq:NP_957484.1 UniGene:Dr.115420
            STRING:Q7ZVZ0 GeneID:394165 KEGG:dre:394165 InParanoid:Q7ZVZ0
            NextBio:20815113 ArrayExpress:Q7ZVZ0 Uniprot:Q7ZVZ0
        Length = 579

 Score = 146 (56.5 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query:    34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             +V  +CL+KFS+ DYIMEP +F+ LK YFQAGG+PE VI+L+
Sbjct:    31 KVQEDCLQKFSSRDYIMEPTVFNTLKSYFQAGGSPEHVIQLL 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        67   0.00091  102 3  11 22  0.49    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  101 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.51u 0.08s 8.59t   Elapsed:  00:00:03
  Total cpu time:  8.51u 0.08s 8.59t   Elapsed:  00:00:03
  Start:  Thu Aug 15 14:05:58 2013   End:  Thu Aug 15 14:06:01 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
