RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15694
(81 letters)
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 25.6 bits (57), Expect = 1.6
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 17 MVDVDSDGGDDPMENPQEVLNECLEKFS 44
++D+ G DP ++ + E L +++
Sbjct: 243 VIDMSGLEGRDPYDDYLTINQE-LSEYN 269
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 25.1 bits (54), Expect = 2.8
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 4 DYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDY----IMEPGIFSQLK 59
D D T D+ M + M N ++ LEK +Y ++ GI +
Sbjct: 32 DSPDLGTDDDDKAMAASQAWQPGVAMPNLYKMQRMLLEKCDLQNYGENAVIPKGIMMNVA 91
Query: 60 RYFQ 63
+Y Q
Sbjct: 92 KYTQ 95
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 24.9 bits (55), Expect = 3.1
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 5 YDDEQTH-RWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
D D + V + D + + ++ +E + S+L +
Sbjct: 139 VDTRNIVLAVDLEKVGKN-----DDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLR 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 3.5
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 25 GDDPMENPQEVLNEC-----LEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIEL--MII 77
D + V+N+ +EK I P I+ +LK E L I+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV------KLENEYALHRSIV 450
Query: 78 D 78
D
Sbjct: 451 D 451
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 24.1 bits (53), Expect = 5.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 6 DDEQTHRWDQD 16
D QTHRW D
Sbjct: 30 GDLQTHRWSND 40
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 24.2 bits (53), Expect = 6.7
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 14 DQDMVDVDSDGGDDPMENPQEVLNE 38
++ + G+ + L+
Sbjct: 272 KEEEIQYRGLDGNTIKTTTAKKLSV 296
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 24.1 bits (53), Expect = 7.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 6 DDEQTHRWDQD 16
D QTHRW D
Sbjct: 33 GDLQTHRWSND 43
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 23.9 bits (51), Expect = 7.1
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 47 DYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDN 79
+YI + + + + G + E++++ +DN
Sbjct: 289 EYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDN 321
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU;
MCSG,PSI-biology, structural genomics, midwest center
for ST genomics; 2.29A {Helicobacter pylori}
Length = 235
Score = 23.8 bits (52), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 46 PDYIMEPGIFSQLKRYFQAGGNPEQVIE 73
PD I PGI+ Q ++ G E+ IE
Sbjct: 203 PDEIHLPGIYVQ--HIYK-GEKFEKRIE 227
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 24.0 bits (51), Expect = 8.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 6 DDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFST--PDYIMEPGIFSQLKRYFQ 63
+ + + DD NP + CL +T D I+ + +K + +
Sbjct: 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIK 376
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 23.7 bits (52), Expect = 9.1
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 6 DDEQTHRWDQD 16
+ QTH W D
Sbjct: 34 GELQTHSWSND 44
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 23.8 bits (51), Expect = 9.8
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 20 VDSDGGDDPMENPQEVLNECLEKFSTPD 47
+ D P P+ C + T
Sbjct: 658 AEGREKDTPDWGPRLNNQVCRKGLQTTT 685
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 23.5 bits (51), Expect = 10.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 6 DDEQTHRWDQD 16
D+ QTH WD +
Sbjct: 150 DELQTHGWDSE 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.413
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,372,926
Number of extensions: 69496
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 18
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)