RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15694
         (81 letters)



>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 23.0 bits (49), Expect = 5.4
 Identities = 5/39 (12%), Positives = 13/39 (33%)

Query: 11 HRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYI 49
          HR    ++D++       +EN  +  +           +
Sbjct: 45 HRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLL 83


>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 415

 Score = 23.0 bits (49), Expect = 5.6
 Identities = 5/40 (12%), Positives = 11/40 (27%), Gaps = 1/40 (2%)

Query: 13  WDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEP 52
               + D     G   M+  + +L E          ++  
Sbjct: 264 VHPALGDAGDFVGKASMDGVEHLLRE-YPNNKFLVTMLSR 302


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,980
Number of extensions: 13758
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 10
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)