BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15695
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1 PE=1
SV=2
Length = 578
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/231 (64%), Positives = 184/231 (79%), Gaps = 2/231 (0%)
Query: 66 YSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHC 125
Y+S + A+ +T+ +++ + +S + AIEK H+ICN + S ELIAE+ TL++C
Sbjct: 349 YASAVIDQPAKKRPMTERMLNKEEL--KSTIQAIEKAHTICNVDQGSTELIAELQTLYNC 406
Query: 126 IRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELF 185
I+YPVV VGVIRW+E V EPSYFKL T+ PTHLA+LDEV H L ++L L I LF
Sbjct: 407 IKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAVHPTLQQQILFLLIRLF 466
Query: 186 ESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEV 245
ESKQDELEILVQLEM+KM+LDRMVNLL RGCVVPV++Y+KQC DTDISLIRYFVTEV
Sbjct: 467 ESKQDELEILVQLEMKKMILDRMVNLLTRGCVVPVLRYIKQCCAIEDTDISLIRYFVTEV 526
Query: 246 LEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVS 296
LE IT PY+PEFVQLFLP+VEN+EITGTMRG+G+NDPVSEFIVHCKAH+ +
Sbjct: 527 LETITHPYSPEFVQLFLPMVENEEITGTMRGEGDNDPVSEFIVHCKAHYTT 577
>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2
Length = 591
Score = 275 bits (704), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 122/202 (60%), Positives = 170/202 (84%), Gaps = 1/202 (0%)
Query: 98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 390 AIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 449
Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
P HLALLDE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG
Sbjct: 450 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 509
Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++
Sbjct: 510 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKA 569
Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
+GE+DPV+EFI HCK++F+ N
Sbjct: 570 EGEHDPVTEFIAHCKSNFIVVN 591
>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1
Length = 590
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 121/202 (59%), Positives = 170/202 (84%), Gaps = 1/202 (0%)
Query: 98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448
Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
P HLALLDE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG
Sbjct: 449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 508
Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++
Sbjct: 509 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568
Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
+GE+DPV+EFI HCK++F+ N
Sbjct: 569 EGEHDPVTEFIAHCKSNFIMVN 590
>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2
Length = 590
Score = 274 bits (701), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 121/202 (59%), Positives = 170/202 (84%), Gaps = 1/202 (0%)
Query: 98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448
Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
P HLALLDE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG
Sbjct: 449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 508
Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++
Sbjct: 509 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568
Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
+GE+DPV+EFI HCK++F+ N
Sbjct: 569 EGEHDPVTEFIAHCKSNFIMVN 590
>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1
Length = 590
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 120/202 (59%), Positives = 170/202 (84%), Gaps = 1/202 (0%)
Query: 98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448
Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
P HLALLDE+ TCH LH +VLQL ++LFE++ +L+++ QLE++K LLDRMV+LL RG
Sbjct: 449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGH 508
Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I PPYT +FVQLFLPI+END I GT++
Sbjct: 509 VLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568
Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
+GE+DPV+EFI HCK++F+ N
Sbjct: 569 EGEHDPVTEFIAHCKSNFILVN 590
>sp|P16885|PLCG2_HUMAN 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2
OS=Homo sapiens GN=PLCG2 PE=1 SV=4
Length = 1265
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 212 LCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEIT 271
CRG ++ V W +GD + +YF + +E I+ T +F +L I+E++ +
Sbjct: 790 FCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS---TADFEELEKQIIEDNPLG 846
Query: 272 GTMRG 276
RG
Sbjct: 847 SLCRG 851
>sp|P83615|TPAP_STRMB Prolyl tri/tetrapeptidyl aminopeptidase OS=Streptomyces mobaraensis
GN=ptp PE=1 SV=2
Length = 477
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 234 DISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVS 284
DIS + + LE TP Y QL P V+N + G +R G N P S
Sbjct: 302 DISGFDGYTDQGLERFTPYYYQAGTQLGAPTVKNPHLKGVLRYPGINQPRS 352
>sp|Q9V3Q2|OR35A_DROME Putative odorant receptor 35a OS=Drosophila melanogaster GN=Or35a
PE=3 SV=3
Length = 409
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 32/154 (20%)
Query: 157 PTHLALLD-EVVTCHTFLHHKVLQLFIELFESK-----QDELEILVQLEMRKMLLDRMVN 210
PT+L L++ + + H LH + LQ F+E+F + + E E+ +++ KM+++R+V+
Sbjct: 83 PTYLILVEAQFRSLHILLHFEKLQKFLEIFYANIYIDPRKEPEMFRKVD-GKMIINRLVS 141
Query: 211 LLCRGCVV------PVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPI 264
+ G V+ PV + Q + L ++ P+ + + +F+P+
Sbjct: 142 AMY-GAVISLYLIAPVFSIINQS---------------KDFLYSMIFPFDSDPLYIFVPL 185
Query: 265 VENDEITGTMRGD---GENDPVSEFIVHCKAHFV 295
+ + G + GE + + E IVH ++
Sbjct: 186 LLTNVWVGIVIDTMMFGETNLLCELIVHLNGSYM 219
>sp|Q7M7V7|ISPT_WOLSU Isoprenyl transferase OS=Wolinella succinogenes (strain ATCC 29543
/ DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=uppS
PE=3 SV=1
Length = 228
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 53 PPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSS 112
SD+S + Y+ + N P+ EVD L LL L +E L + +I + S+ S
Sbjct: 47 SKSDISFLTLYAFSTENWKRPKTEVDFLMRLLSDYLKKEAEVYLKNNIRFKAIGDLSRFS 106
Query: 113 NELIAEITTL 122
+ L+ EI TL
Sbjct: 107 SRLLDEIETL 116
>sp|C7GL41|YM084_YEAS2 Putative glutamine--fructose-6-phosphate aminotransferase
[isomerizing] OS=Saccharomyces cerevisiae (strain
JAY291) GN=C1Q_01026 PE=3 SV=2
Length = 720
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 103 HSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLAL 162
+ +C S E I L +CI+ V++GV V C+ + S F C HT T
Sbjct: 448 NDVCIFVSRSGETTDTINALNYCIKKEAVTIGV---VNCSGSSISRFTHCGVHTNT--GP 502
Query: 163 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRM 208
+ T ++ + + I L+ S+ +++ ++E RK ++ +
Sbjct: 503 EKGIATTKSYTSQYIALVMIALWMSE----DLVSKIERRKEIIQAL 544
>sp|A6ZME2|YM084_YEAS7 Putative glutamine--fructose-6-phosphate aminotransferase
[isomerizing] OS=Saccharomyces cerevisiae (strain
YJM789) GN=SCY_4254 PE=3 SV=1
Length = 714
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 103 HSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLAL 162
+ +C S E I L +CI+ V++GV V C+ + S F C HT T
Sbjct: 442 NDVCIFVSRSGETTDTINALNYCIKKEAVTIGV---VNCSGSSISRFTHCGVHTNT--GP 496
Query: 163 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRM 208
+ T ++ + + I L+ S+ +++ ++E RK ++ +
Sbjct: 497 EKGIATTKSYTSQYIALVMIALWMSE----DLVSKIERRKEIIQAL 538
>sp|B3LLX6|YM084_YEAS1 Putative glutamine--fructose-6-phosphate aminotransferase
[isomerizing] OS=Saccharomyces cerevisiae (strain
RM11-1a) GN=SCRG_01975 PE=3 SV=1
Length = 720
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 103 HSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLAL 162
+ +C S E I L +CI+ V++GV V C+ + S F C HT T
Sbjct: 448 NDVCIFVSRSGETTDTINALNYCIKKEAVTIGV---VNCSGSSISRFTHCGVHTNT--GP 502
Query: 163 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRM 208
+ T ++ + + I L+ S+ +++ ++E RK ++ +
Sbjct: 503 EKGIATTKSYTSQYIALVMIALWMSE----DLVSKIERRKEIIQAL 544
>sp|Q99728|BARD1_HUMAN BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1
PE=1 SV=2
Length = 777
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 28 TVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPE---AEVDALTDLL 84
+V QP + +S + YE ++P PP+D+S R+ + S + AE++ +L
Sbjct: 162 SVQTQPAIKKDASAQQDSYEFVSPSPPADVSERAKKASARSGKKQKKKTLAEINQKWNLE 221
Query: 85 VHSLDTSSESDLFAIEKVHSICN--SSKSSNELIAEITTL 122
D +S + +K+ S C+ S SS ++ EI L
Sbjct: 222 AEKEDGEFDSKEESKQKLVSFCSQPSVISSPQINGEIDLL 261
>sp|Q06337|EAF1_YEAST Chromatin modification-related protein EAF1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=EAF1 PE=1
SV=2
Length = 982
Score = 31.6 bits (70), Expect = 8.0, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 32 QPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEVDA----------LT 81
Q QS +SS+ E PI+PRPP ++ ++Y+ Y + PP + +
Sbjct: 187 QSQSLESSNNSEMASLPISPRPPVP-NALAHYTYYENIEYPPADPTEVQPAVKFKDPLIK 245
Query: 82 DLLVHSLDTS---SESDLFAIEKVHSICN 107
+++ +DTS +E+++ A+E V + N
Sbjct: 246 NIMAKEIDTSDHYNENNVDALETVFLLMN 274
>sp|P0CF18|YM085_YEAST Uncharacterized protein YMR085W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR085W PE=5 SV=1
Length = 432
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 103 HSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLAL 162
+ +C S E I L +CI+ V++GV V C+ + S F C HT T
Sbjct: 160 NDVCIFVSRSGETTDTINALNYCIKKEAVTIGV---VNCSGSSISRFTHCGVHTNT--GP 214
Query: 163 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRM 208
+ T ++ + + I L+ S+ +++ ++E RK ++ +
Sbjct: 215 EKGIATTKSYTSQYIALVMIALWMSE----DLVSKIERRKEIIQAL 256
>sp|C8ZET8|YM085_YEAS8 Uncharacterized protein EC1118_1M3_2531g OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=EC1118_1M3_2531g PE=5 SV=1
Length = 432
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 103 HSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLAL 162
+ +C S E I L +CI+ V++GV V C+ + S F C HT T
Sbjct: 160 NDVCIFVSRSGETTDTINALNYCIKKEAVTIGV---VNCSGSSISRFTHCGVHTNTGPE- 215
Query: 163 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRM 208
+ T ++ + + I L+ S+ +++ ++E RK ++ +
Sbjct: 216 -KGIATTKSYTSQYIALVMIALWMSE----DLVSKIERRKEIIQAL 256
>sp|Q9HDV6|MOR2_SCHPO Cell polarity protein mor2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mor2 PE=4 SV=1
Length = 2196
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 222 KYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGEND 281
+++K C++R T ++L+R V E L +IT +QL L +E+ E+ ++ +ND
Sbjct: 775 RFIKVCFERFPTTMALLRNTVCEKLPSIT-------MQL-LSRIESSELNFNLKSAVKND 826
Query: 282 PVSEFIV 288
EF++
Sbjct: 827 NFPEFLL 833
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,781,485
Number of Sequences: 539616
Number of extensions: 4598476
Number of successful extensions: 11283
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11269
Number of HSP's gapped (non-prelim): 34
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)