Query psy15695
Match_columns 299
No_of_seqs 82 out of 84
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 19:06:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04858 TH1: TH1 protein; In 100.0 1E-74 2.2E-79 586.5 19.9 283 12-297 260-584 (584)
2 PF14964 DUF4507: Domain of un 82.3 14 0.0003 36.9 10.6 143 122-267 9-192 (362)
3 PF12717 Cnd1: non-SMC mitotic 63.8 83 0.0018 27.4 9.8 94 160-266 9-108 (178)
4 smart00543 MIF4G Middle domain 62.9 94 0.002 26.3 10.6 119 156-294 52-174 (200)
5 PF05621 TniB: Bacterial TniB 60.0 33 0.00071 33.5 7.1 76 99-177 151-237 (302)
6 PF09384 UTP15_C: UTP15 C term 58.7 26 0.00057 30.2 5.7 55 135-193 79-133 (148)
7 KOG1078|consensus 57.2 56 0.0012 36.0 8.8 132 159-296 302-447 (865)
8 PF06025 DUF913: Domain of Unk 51.3 33 0.00073 34.1 5.8 53 135-187 197-251 (379)
9 PF05997 Nop52: Nucleolar prot 50.1 1.1E+02 0.0024 28.0 8.6 104 161-267 4-140 (217)
10 PF02854 MIF4G: MIF4G domain; 40.3 2.2E+02 0.0048 23.8 10.3 61 156-216 53-118 (209)
11 PF07035 Mic1: Colon cancer-as 37.5 1.2E+02 0.0025 27.2 6.5 68 153-241 58-126 (167)
12 COG5240 SEC21 Vesicle coat com 36.6 2.4E+02 0.0051 30.8 9.4 132 159-298 323-470 (898)
13 KOG1058|consensus 33.3 2.1E+02 0.0046 31.8 8.6 58 125-187 387-444 (948)
14 PF06685 DUF1186: Protein of u 28.4 2E+02 0.0044 27.2 6.8 97 131-238 108-204 (249)
15 PF08158 NUC130_3NT: NUC130/3N 24.0 1.1E+02 0.0023 22.4 3.2 49 164-216 3-51 (52)
16 smart00288 VHS Domain present 23.1 3.5E+02 0.0075 22.6 6.7 54 162-219 42-96 (133)
17 PF14911 MMS22L_C: S-phase gen 22.9 4.4E+02 0.0096 26.6 8.4 61 129-189 225-290 (373)
18 smart00572 DZF domain in DSRM 22.0 2.1E+02 0.0045 27.3 5.6 70 136-219 117-190 (246)
19 cd03569 VHS_Hrs_Vps27p VHS dom 21.7 3.9E+02 0.0084 22.8 6.8 67 159-228 43-113 (142)
20 cd08813 DED_Caspase_8_repeat2 21.5 1E+02 0.0022 24.6 2.9 43 196-240 34-77 (83)
21 PF14664 RICTOR_N: Rapamycin-i 21.3 2.5E+02 0.0055 27.9 6.3 138 130-279 40-189 (371)
No 1
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1e-74 Score=586.48 Aligned_cols=283 Identities=49% Similarity=0.841 Sum_probs=262.1
Q ss_pred ccccccCCCCCCCcceeeeecCCCccccccchhhcccCCCCCCCccchHHHhhhccCCCCCChhhh--HHHHHHHHHhhh
Q psy15695 12 CKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEV--DALTDLLVHSLD 89 (299)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~siye~i~~r~pSd~s~~~Ly~~Y~s~~pPpv~~l--p~~ldlLv~~lf 89 (299)
.+...++|.-..++++.. +.+++++..++++.++|+.+.++..++++||++|++++||||++| |.|+|+|+|+||
T Consensus 260 e~~A~~~~~~vt~i~~aL---~~s~~~p~a~~ai~smLs~~~l~paDI~~Ly~~Y~~~~pPPV~lLR~P~~l~lLld~LF 336 (584)
T PF04858_consen 260 EREAAKRGHDVTDITLAL---NGSSSYPEACQAIASMLSSNALNPADITKLYRMYSSPDPPPVELLRHPQFLDLLLDALF 336 (584)
T ss_pred HHHHHHcCCCcHHHHHHH---hcCccCchHHHHHHHHHhcCCCCHHHHHHHHHHhccCCCCCchhhcCHHHHHHHHHHHc
Confidence 344455565444555544 555678889999999999998888888899999999999999999 999999999999
Q ss_pred c-----------------------------------CCh----HHHHHHHHHHHhhcCC-CCchhHHHHHHHHhhhcccC
Q psy15695 90 T-----------------------------------SSE----SDLFAIEKVHSICNSS-KSSNELIAEITTLFHCIRYP 129 (299)
Q Consensus 90 ~-----------------------------------~n~----~t~~Aie~a~~Ic~~~-~~~~el~~el~~L~~~i~~P 129 (299)
+ +|+ +|++|||+||+||+++ +|++++++|+++|++||++|
T Consensus 337 ~pg~~i~~e~r~kyi~LLAYAasV~e~~~~~~~~~~~~~del~~t~~ale~a~~ic~~~~~g~~~~~~el~~L~~~i~~P 416 (584)
T PF04858_consen 337 KPGSKINPEHRSKYIYLLAYAASVVETPAKNQPDRSLNCDELKSTKQALEKAHAICCNAARGSSELQAELPKLYSCIRYP 416 (584)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHcccccccCcccccccHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhCCC
Confidence 8 111 7888999999997665 67899999999999999999
Q ss_pred ceeehhhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH
Q psy15695 130 VVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMV 209 (299)
Q Consensus 130 vVA~GVL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV 209 (299)
|||+|||+||+++|++|+||+..++++|+||+||||||+|||.||+.||++|+++|+++++++++++++|+||+++||||
T Consensus 417 vVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V 496 (584)
T PF04858_consen 417 VVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMV 496 (584)
T ss_pred hhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcCccccccccCCCCCCcHHHHHHH
Q psy15695 210 NLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVH 289 (299)
Q Consensus 210 ~L~s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~eVLe~i~PPYS~eFv~~fl~Ll~~~~i~~~l~~~~~~~~v~eFi~~ 289 (299)
||+++|||+|||+||++||.++++|+|||||||+||||+|+||||++|+++|+||+++++|+|+|++++++++|++|++|
T Consensus 497 ~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii~PPYS~~Fv~~~l~ll~~~~i~~~~~~~~~~~~v~~F~~~ 576 (584)
T PF04858_consen 497 HLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEIIGPPYSPEFVQLFLPLLENAEIRGGMRTEGDNDPVSEFIVH 576 (584)
T ss_pred HHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhhhhccCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q psy15695 290 CKAHFVSQ 297 (299)
Q Consensus 290 C~~~~~~~ 297 (299)
||+|++++
T Consensus 577 c~~~~~~~ 584 (584)
T PF04858_consen 577 CKRNYIVV 584 (584)
T ss_pred HHhccccC
Confidence 99999875
No 2
>PF14964 DUF4507: Domain of unknown function (DUF4507)
Probab=82.34 E-value=14 Score=36.92 Aligned_cols=143 Identities=15% Similarity=0.260 Sum_probs=80.7
Q ss_pred HhhhcccCceeehhhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhH------------HHHHHHHHHHhccC
Q psy15695 122 LFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHH------------KVLQLFIELFESKQ 189 (299)
Q Consensus 122 L~~~i~~PvVA~GVL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~------------~Vl~lL~~l~e~~~ 189 (299)
-....+||-.|.-+|.=++....... -.....+.-..+++|...+=+..|. +.+++|+..|...+
T Consensus 9 ~L~~~~fp~~a~e~L~~le~l~~~r~---~~~~~~~~~~~lieefiF~~~~~r~~~~~~ln~lQELQLleiL~~yF~~~~ 85 (362)
T PF14964_consen 9 SLRKLDFPSCAKEALSQLEKLCRSRG---PSPNQQDELMELIEEFIFQEPDDRGSQRKRLNALQELQLLEILCDYFQEQS 85 (362)
T ss_pred hhhhcchHHHHHHHHHHHHHHHhccC---CccccchHHHHHHHHHHhcCchhccCCCCCCCHHHHHHHHHHHHHHHcccC
Confidence 33445666666666665553222110 0001122334555555444433333 35666666666654
Q ss_pred Ch------hHHH------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHH------------
Q psy15695 190 DE------LEIL------VQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEV------------ 245 (299)
Q Consensus 190 ~~------~d~l------~~lElkr~ilD~mV~L~s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~eV------------ 245 (299)
++ .+.+ ...+-|..+|-++|-|--++-+.||++-+.-|.++..-..+..-+.+..+
T Consensus 86 ~d~~r~~iF~~LF~~~~~~~~~~R~~lL~kLVS~AIa~~~~~VL~~a~~Wmqq~g~~s~~s~~La~~iv~dy~~l~p~~~ 165 (362)
T PF14964_consen 86 DDAVRYAIFDSLFGGQGDDADESRMSLLSKLVSMAIALPCVPVLNCAATWMQQLGCSSSYSLRLAQMIVEDYCCLSPGSQ 165 (362)
T ss_pred CHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhccCCccH
Confidence 43 1111 11223889999999999999999999999999988555555444444433
Q ss_pred -----HhhcCCCCCHHHHHHhhhhhcC
Q psy15695 246 -----LEAITPPYTPEFVQLFLPIVEN 267 (299)
Q Consensus 246 -----Le~i~PPYS~eFv~~fl~Ll~~ 267 (299)
|..++|.|--.|+-++..+-.+
T Consensus 166 ~~L~~l~~~sP~F~a~fitavt~ly~~ 192 (362)
T PF14964_consen 166 ETLKQLPNVSPRFCANFITAVTSLYDN 192 (362)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHccC
Confidence 4456666666666666565554
No 3
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=63.78 E-value=83 Score=27.38 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhcCcchh---HHHHHHHhhhcCCCch-
Q psy15695 160 LALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVP---VVKYVKQCWQRGDTDI- 235 (299)
Q Consensus 160 L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ViP---Vl~~i~~~~~~~~iD~- 235 (299)
+..+..++.+||.+=......+..++..+. + ..|++.+=.+-+|+..|++-+ .+..+..+. .+-|+
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~----~----~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l--~D~~~~ 78 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDED----P----LVRKTALLVLSHLILEDMIKVKGQLFSRILKLL--VDENPE 78 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCCC----H----HHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH--cCCCHH
Confidence 567788899998877777777777776533 2 589999999999999998765 335555555 34443
Q ss_pred --HHHHHHHHHHHhhcCCCCCHHHHHHhhhhhc
Q psy15695 236 --SLIRYFVTEVLEAITPPYTPEFVQLFLPIVE 266 (299)
Q Consensus 236 --SLiRyFv~eVLe~i~PPYS~eFv~~fl~Ll~ 266 (299)
+..++|..+++.-- +..-|.+.|..++.
T Consensus 79 Ir~~A~~~~~e~~~~~---~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR---NPNIIYNNFPELIS 108 (178)
T ss_pred HHHHHHHHHHHHHHhc---cchHHHHHHHHHHH
Confidence 34555555555542 44556666666664
No 4
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=62.92 E-value=94 Score=26.31 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCch
Q psy15695 156 TPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDI 235 (299)
Q Consensus 156 tpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ViPVl~~i~~~~~~~~iD~ 235 (299)
.|.+-.|+..+....|..+..+++-+.+.|+..-...+ ...-+..+. .+.++..++..+-++.
T Consensus 52 ~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~~e~~~-~~~~~~~~~----------------~i~fl~eL~~~~~i~~ 114 (200)
T smart00543 52 IPAYARLCALLNAKNPDFGSLLLERLQEEFEKGLESEE-ESDKQRRLG----------------LVRFLGELYNFQVLTS 114 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHh----------------HHHHHHHHHHcccCcH
Confidence 67788899999998888888888888877766311111 111123333 4455555555566666
Q ss_pred HHHHHHHHHHHhhcCCCC---CHHHHHHhhhhhcCccccc-cccCCCCCCcHHHHHHHhhhhc
Q psy15695 236 SLIRYFVTEVLEAITPPY---TPEFVQLFLPIVENDEITG-TMRGDGENDPVSEFIVHCKAHF 294 (299)
Q Consensus 236 SLiRyFv~eVLe~i~PPY---S~eFv~~fl~Ll~~~~i~~-~l~~~~~~~~v~eFi~~C~~~~ 294 (299)
+.+...+.++++...+|. +..-+..++-++.. .| .+..++..+.+.+|++.+....
T Consensus 115 ~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~---~G~~l~~~~~~~~~~~~l~~l~~~~ 174 (200)
T smart00543 115 KIILELLKELLNDLTKLDPPRSDFSVECLLSLLPT---CGKDLEREKSPKLLDEILERLQDYL 174 (200)
T ss_pred HHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHH---hhHHHcCcccHHHHHHHHHHHHHHH
Confidence 666666667777666652 34444445544432 12 2221334567777777766543
No 5
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=60.05 E-value=33 Score=33.51 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=54.9
Q ss_pred HHHHHHh-hcCCCCchhHHHHHHHHhhhcccCceeehhhHHHHhhhcCccccccccCCchh----------HHHHHHHHH
Q psy15695 99 IEKVHSI-CNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPT----------HLALLDEVV 167 (299)
Q Consensus 99 ie~a~~I-c~~~~~~~el~~el~~L~~~i~~PvVA~GVL~wv~~~l~~ps~~~l~~~stpv----------~L~LLdeIa 167 (299)
|.+.|++ ..+.....++++.+..|-.-.+.|+|++|.--.+...-+|+ ++.+-..|+ +..||.-+.
T Consensus 151 IDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~---QLa~RF~~~~Lp~W~~d~ef~~LL~s~e 227 (302)
T PF05621_consen 151 IDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP---QLASRFEPFELPRWELDEEFRRLLASFE 227 (302)
T ss_pred eechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH---HHHhccCCccCCCCCCCcHHHHHHHHHH
Confidence 7788997 44446678999999999999999999999999999888887 222222222 456666666
Q ss_pred HhcchhhHHH
Q psy15695 168 TCHTFLHHKV 177 (299)
Q Consensus 168 ~~HP~lr~~V 177 (299)
..=|+.+++-
T Consensus 228 ~~LPLr~~S~ 237 (302)
T PF05621_consen 228 RALPLRKPSN 237 (302)
T ss_pred HhCCCCCCCC
Confidence 6666555543
No 6
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=58.72 E-value=26 Score=30.21 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=31.3
Q ss_pred hhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhH
Q psy15695 135 VIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELE 193 (299)
Q Consensus 135 VL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d 193 (299)
+|+|+...+++|.|+..+.+-.-+.|.+-.+.....| .+.+.+..+-..-..++.
T Consensus 79 iL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~----~v~~~~~~L~~~v~~E~~ 133 (148)
T PF09384_consen 79 ILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQSP----EVDKLFQKLQRKVQEELQ 133 (148)
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHH
Confidence 7899999999999987653333333333333333333 444455555444343443
No 7
>KOG1078|consensus
Probab=57.20 E-value=56 Score=35.97 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHH------------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Q psy15695 159 HLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEIL------------VQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQ 226 (299)
Q Consensus 159 ~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l------------~~lElkr~ilD~mV~L~s~G~ViPVl~~i~~ 226 (299)
++..|.++|..||.+=..+=.=|..+.......+..+ ..-.|++.+ -.||+=++-++-+=|++.++.
T Consensus 302 AvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI-~~fv~disDeFKivvvdai~s 380 (865)
T KOG1078|consen 302 AVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQI-SSFVSDISDEFKIVVVDAIRS 380 (865)
T ss_pred HHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHH-HHHHHhccccceEEeHHHHHH
Confidence 6789999999999875544333333332222222111 111233333 334445688999999999988
Q ss_pred hhhcCCCchHHHHHHHHHHHhhcCC-CCCHHHHHHhhhhhc-CccccccccCCCCCCcHHHHHHHhhhhccc
Q psy15695 227 CWQRGDTDISLIRYFVTEVLEAITP-PYTPEFVQLFLPIVE-NDEITGTMRGDGENDPVSEFIVHCKAHFVS 296 (299)
Q Consensus 227 ~~~~~~iD~SLiRyFv~eVLe~i~P-PYS~eFv~~fl~Ll~-~~~i~~~l~~~~~~~~v~eFi~~C~~~~~~ 296 (299)
...+=..-....--|+..+|.-=|- -|...-+...+.+++ +++-.-. .-.-+=+||+.|..+...
T Consensus 381 Lc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~ 447 (865)
T KOG1078|consen 381 LCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIA 447 (865)
T ss_pred HHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHH
Confidence 7655555566677788888776322 344455555566655 3222111 125678999999986543
No 8
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=51.27 E-value=33 Score=34.12 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=37.3
Q ss_pred hhHHHHhhhcCccccccccC-CchhHH-HHHHHHHHhcchhhHHHHHHHHHHHhc
Q psy15695 135 VIRWVECTVTEPSYFKLCTE-HTPTHL-ALLDEVVTCHTFLHHKVLQLFIELFES 187 (299)
Q Consensus 135 VL~wv~~~l~~ps~~~l~~~-stpv~L-~LLdeIa~~HP~lr~~Vl~lL~~l~e~ 187 (299)
.+..+=..+++|.|...... -++.-+ .-+||.+..||.||+.+++.+..+++.
T Consensus 197 ~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~ 251 (379)
T PF06025_consen 197 PLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDR 251 (379)
T ss_pred hHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 33444445678888754422 334333 679999999999999999998887665
No 9
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=50.05 E-value=1.1e+02 Score=28.03 Aligned_cols=104 Identities=14% Similarity=0.237 Sum_probs=73.5
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhccCCh--------------------hHHHHHHHHHHHHHHHHHHHHhcC-----
Q psy15695 161 ALLDEVVTCHTFLHHKVLQLFIELFESKQDE--------------------LEILVQLEMRKMLLDRMVNLLCRG----- 215 (299)
Q Consensus 161 ~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~--------------------~d~l~~lElkr~ilD~mV~L~s~G----- 215 (299)
.+.+..|..++.-|.++++.|+.++...... ..++.|.|+...+-+.+ +.+...
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~-~~~~~~~~~~~ 82 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLI-HSFPSEKAALL 82 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HhhcChHHHHH
Confidence 4678888899999999999999988875432 12445666666666533 333222
Q ss_pred cchhHHHHHHHhhhcCCCch-------HHHHHHHHHHHhhcCC-CCCHHHHHHhhhhhcC
Q psy15695 216 CVVPVVKYVKQCWQRGDTDI-------SLIRYFVTEVLEAITP-PYTPEFVQLFLPIVEN 267 (299)
Q Consensus 216 ~ViPVl~~i~~~~~~~~iD~-------SLiRyFv~eVLe~i~P-PYS~eFv~~fl~Ll~~ 267 (299)
++-.-++++.+=| ..||. .|+|.|+.+.+.++.- -+..+++..+..++..
T Consensus 83 f~~~f~~tm~rEW--~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~~ 140 (217)
T PF05997_consen 83 FLKAFWETMRREW--DGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILSE 140 (217)
T ss_pred HHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3333556666666 68886 7999999999998866 3888888888888875
No 10
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=40.29 E-value=2.2e+02 Score=23.85 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHhcc-hhhHHHHHHHHHHHhccC--ChhHHH--HHHHHHHHHHHHHHHHHhcCc
Q psy15695 156 TPTHLALLDEVVTCHT-FLHHKVLQLFIELFESKQ--DELEIL--VQLEMRKMLLDRMVNLLCRGC 216 (299)
Q Consensus 156 tpv~L~LLdeIa~~HP-~lr~~Vl~lL~~l~e~~~--~~~d~l--~~lElkr~ilD~mV~L~s~G~ 216 (299)
.|.+-.|+..+...+| ..+..+++-+.+-|+... .+.+.. .....++..+-.+.+|+..|.
T Consensus 53 ~~~~a~l~~~l~~~~~~~f~~~ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~v 118 (209)
T PF02854_consen 53 SPLYARLCAALNSRFPSEFRSLLLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGV 118 (209)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhcc
Confidence 7788899999999999 999999999988887721 111111 223345555555555555554
No 11
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=37.48 E-value=1.2e+02 Score=27.15 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=43.0
Q ss_pred cCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH-HHhcCcchhHHHHHHHhhhcC
Q psy15695 153 TEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVN-LLCRGCVVPVVKYVKQCWQRG 231 (299)
Q Consensus 153 ~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~-L~s~G~ViPVl~~i~~~~~~~ 231 (299)
.++.|+=+.|| ++...||..+.-.+|+|+++=.+ . |-.|+ |++.|.++..+.|+++- +
T Consensus 58 ~DSk~lA~~LL-s~~~~~~~~~Ql~lDMLkRL~~~-~----------------~~iievLL~~g~vl~ALr~ar~~---~ 116 (167)
T PF07035_consen 58 PDSKPLACQLL-SLGNQYPPAYQLGLDMLKRLGTA-Y----------------EEIIEVLLSKGQVLEALRYARQY---H 116 (167)
T ss_pred CCcHHHHHHHH-HhHccChHHHHHHHHHHHHhhhh-H----------------HHHHHHHHhCCCHHHHHHHHHHc---C
Confidence 45566655554 45567777777777777776422 1 12244 78999999999999883 2
Q ss_pred CCchHHHHHH
Q psy15695 232 DTDISLIRYF 241 (299)
Q Consensus 232 ~iD~SLiRyF 241 (299)
..|.--.|.|
T Consensus 117 ~~~~~~~~~f 126 (167)
T PF07035_consen 117 KVDSVPARKF 126 (167)
T ss_pred CcccCCHHHH
Confidence 3444344444
No 12
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=36.65 E-value=2.4e+02 Score=30.77 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHH-----------HHHHHHHHHHHHHHhcCcchhHHHHHHHh
Q psy15695 159 HLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQL-----------EMRKMLLDRMVNLLCRGCVVPVVKYVKQC 227 (299)
Q Consensus 159 ~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~l-----------Elkr~ilD~mV~L~s~G~ViPVl~~i~~~ 227 (299)
-+.+|.++|.+.|.+-..+=.=+..+.......+....+- ..--..+-.|||=++-|+=+=++++++..
T Consensus 323 A~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsL 402 (898)
T COG5240 323 AMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSL 402 (898)
T ss_pred HHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHH
Confidence 3578888888888764433322222332222222111111 11112233456666999988888888775
Q ss_pred hhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcCccccccccCCCCC-----CcHHHHHHHhhhhccccC
Q psy15695 228 WQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGEN-----DPVSEFIVHCKAHFVSQN 298 (299)
Q Consensus 228 ~~~~~iD~SLiRyFv~eVLe~i~PPYS~eFv~~fl~Ll~~~~i~~~l~~~~~~-----~~v~eFi~~C~~~~~~~~ 298 (299)
...=.=-.-.+-.|.+.+|--=| .-+|=..++.-+ ++.|.-..|+ +.+-+||+.|+-|.+.++
T Consensus 403 sl~Fp~k~~s~l~FL~~~L~~eG---g~eFK~~~Vdai-----sd~~~~~p~skEraLe~LC~fIEDcey~~I~vr 470 (898)
T COG5240 403 SLLFPSKKLSYLDFLGSSLLQEG---GLEFKKYMVDAI-----SDAMENDPDSKERALEVLCTFIEDCEYHQITVR 470 (898)
T ss_pred HhhCcHHHHHHHHHHHHHHHhcc---cchHHHHHHHHH-----HHHHhhCchHHHHHHHHHHHHHhhcchhHHHHH
Confidence 32222222234455555554422 234544443322 2333222121 567789999998876653
No 13
>KOG1058|consensus
Probab=33.27 E-value=2.1e+02 Score=31.80 Aligned_cols=58 Identities=14% Similarity=0.315 Sum_probs=47.2
Q ss_pred hcccCceeehhhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhc
Q psy15695 125 CIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFES 187 (299)
Q Consensus 125 ~i~~PvVA~GVL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~ 187 (299)
.++||=+|+.+++..-.+++|. +..+.--.|+.++|+.++.|.||..++.-|.+-|..
T Consensus 387 av~Fp~~aatvV~~ll~fisD~-----N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 387 AVKFPEVAATVVSLLLDFISDS-----NEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQ 444 (948)
T ss_pred hhcChHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhh
Confidence 5899999999999988888765 112233468999999999999999999988887665
No 14
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.38 E-value=2e+02 Score=27.24 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=63.1
Q ss_pred eeehhhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q psy15695 131 VSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVN 210 (299)
Q Consensus 131 VA~GVL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~ 210 (299)
++.|=+.=+...+.+|.-+++. ----+.-|-.++..||..|..|.+.++.+|.......+.. +...+|.
T Consensus 108 v~~G~~~~L~~li~~~~~~~yv---R~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~--------~~~~Lv~ 176 (249)
T PF06685_consen 108 VGDGDIEPLKELIEDPDADEYV---RMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF--------LWGSLVA 176 (249)
T ss_pred HhCCCHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH--------HHHHHHH
Confidence 4455566666666677555543 1124566778899999999999999999998733322222 2333333
Q ss_pred HHhcCcchhHHHHHHHhhhcCCCchHHH
Q psy15695 211 LLCRGCVVPVVKYVKQCWQRGDTDISLI 238 (299)
Q Consensus 211 L~s~G~ViPVl~~i~~~~~~~~iD~SLi 238 (299)
=+.-=+---.+..|++.++.|-+|.+.+
T Consensus 177 ~~~dL~~~EL~~~I~~~f~~~lVd~~~i 204 (249)
T PF06685_consen 177 DICDLYPEELLPEIRKAFEDGLVDPSFI 204 (249)
T ss_pred HHHhcCHHHhHHHHHHHHHcCCCCcccc
Confidence 2333344456777888888999999877
No 15
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=24.03 E-value=1.1e+02 Score=22.36 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhcCc
Q psy15695 164 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216 (299)
Q Consensus 164 deIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ 216 (299)
.++|.+.|..-..-=+-|.+++...+..+++ |+|+.++--+|-|-.+|.
T Consensus 3 a~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p----~lR~~lv~aLiLLRnK~~ 51 (52)
T PF08158_consen 3 AHVAHCYPKETKDFPQELIDLLRNHHTVLDP----DLRMKLVKALILLRNKDL 51 (52)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccCCH----HHHHHHHHHHHHHHccCC
Confidence 3456666665555555666666665555665 788888888887766654
No 16
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=23.06 E-value=3.5e+02 Score=22.64 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHH-HHHHHHHHHHHHhcCcchh
Q psy15695 162 LLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEM-RKMLLDRMVNLLCRGCVVP 219 (299)
Q Consensus 162 LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lEl-kr~ilD~mV~L~s~G~ViP 219 (299)
|-+.+....|.-....|.+|..+...+|...- .|+ .+.++|.|+.+++.-+..|
T Consensus 42 l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~----~ev~s~~fl~~L~~l~~~~~~~~ 96 (133)
T smart00288 42 LKKRLNNKNPHVALLALTLLDACVKNCGSKFH----LEVASKEFLNELVKLIKPKYPLP 96 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH----HHHHhHHHHHHHHHHHcCCCCcH
Confidence 44444444555556677777777777664332 222 5667888888887766666
No 17
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.87 E-value=4.4e+02 Score=26.58 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=36.0
Q ss_pred CceeehhhHHHHhhhcC---ccccccccCCchhHHHHHHHHHHhc--chhhHHHHHHHHHHHhccC
Q psy15695 129 PVVSVGVIRWVECTVTE---PSYFKLCTEHTPTHLALLDEVVTCH--TFLHHKVLQLFIELFESKQ 189 (299)
Q Consensus 129 PvVA~GVL~wv~~~l~~---ps~~~l~~~stpv~L~LLdeIa~~H--P~lr~~Vl~lL~~l~e~~~ 189 (299)
|.=+.-+|.|+...+.. .+..+..+.-..+.-.+|+....+| |.-|..+.+++..+.+++.
T Consensus 225 ~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 225 PPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred CCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 34445566666666644 1122222333445566777776665 6677778888888888755
No 18
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=21.99 E-value=2.1e+02 Score=27.31 Aligned_cols=70 Identities=17% Similarity=0.321 Sum_probs=47.8
Q ss_pred hHHHHhhhcCccccccccCCchhHHHHHHHHHHhcch---hhHHHHHHHHH-HHhccCChhHHHHHHHHHHHHHHHHHHH
Q psy15695 136 IRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTF---LHHKVLQLFIE-LFESKQDELEILVQLEMRKMLLDRMVNL 211 (299)
Q Consensus 136 L~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~---lr~~Vl~lL~~-l~e~~~~~~d~l~~lElkr~ilD~mV~L 211 (299)
-+|.+.+.+.. .+.-+.+.+|+..+.++|. +.+=.++++.. +....+..+++ ..-+.|+..+
T Consensus 117 akWFq~~a~~l-------~s~~iviRilKd~~~R~~~~~pL~~w~iELl~~~~i~~~~~~l~~-------~~a~RR~fe~ 182 (246)
T smart00572 117 AKWFQARASGL-------QSCVIVIRVLRDLCNRVPTWQPLSGWPLELLVEKAIGSARQPLGL-------GDAFRRVFEC 182 (246)
T ss_pred hHHHHHhccCC-------cchhhHHHHHHHHHHhcccccccccccHHHHHHHHhccCCCCCCH-------HHHHHHHHHH
Confidence 46888777543 2355678999999999999 77888888887 33333322322 1235667778
Q ss_pred HhcCcchh
Q psy15695 212 LCRGCVVP 219 (299)
Q Consensus 212 ~s~G~ViP 219 (299)
++.|+.+|
T Consensus 183 lAsG~l~p 190 (246)
T smart00572 183 LASGILLP 190 (246)
T ss_pred HHhccCcC
Confidence 88888866
No 19
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.72 E-value=3.9e+02 Score=22.84 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhcCcchh----HHHHHHHhh
Q psy15695 159 HLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVP----VVKYVKQCW 228 (299)
Q Consensus 159 ~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ViP----Vl~~i~~~~ 228 (299)
.=+|-+.+..++|......|.+|..+..++|...-. + =-.+.++|.|+-|++...-.. +++.+.+|.
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~--e-vas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHD--E-VASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHH--H-HhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 345566666667777777888888888887653321 1 125788888888887544333 344445544
No 20
>cd08813 DED_Caspase_8_repeat2 Death Effector Domain, repeat 2, of Caspase-8. Death effector domain (DED) found in caspase-8 (CASP8, FLICE), repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-10, and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 also plays many important non-apoptotic functions including roles in embryonic development, cell adhesion and motility, immune cell proliferation and differentiation, T-cell activation, and NFkappaB signaling. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the
Probab=21.53 E-value=1e+02 Score=24.61 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchh-HHHHHHHhhhcCCCchHHHHH
Q psy15695 196 VQLEMRKMLLDRMVNLLCRGCVVP-VVKYVKQCWQRGDTDISLIRY 240 (299)
Q Consensus 196 ~~lElkr~ilD~mV~L~s~G~ViP-Vl~~i~~~~~~~~iD~SLiRy 240 (299)
.++|--++.+|.+++|-.+|.+-| =+++..++. .+++++|.+.
T Consensus 34 ~kle~~~s~Ldlf~eLEk~~~l~~dnl~~L~~il--~~i~~~L~~k 77 (83)
T cd08813 34 SKLDDETTLLDIFIEMEKKGILGEDNLDMLKRIC--AKINKSLLKK 77 (83)
T ss_pred hHHhhhccHHHHHHHHHhhCCCCCchHHHHHHHH--HHHhHHHHHH
Confidence 456888899999999999999999 677777776 4677777654
No 21
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=21.29 E-value=2.5e+02 Score=27.90 Aligned_cols=138 Identities=9% Similarity=0.133 Sum_probs=74.0
Q ss_pred ceeehhhHHHHhhhcCccccccc-cCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q psy15695 130 VVSVGVIRWVECTVTEPSYFKLC-TEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRM 208 (299)
Q Consensus 130 vVA~GVL~wv~~~l~~ps~~~l~-~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~m 208 (299)
.|-++-+|-++..+.++.+.+.. .-+.+.++..-=+.-.+|..=|.++|.+++++++.... .+ ++-+.++-.+
T Consensus 40 ~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~-----~~~~~vvral 113 (371)
T PF14664_consen 40 EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PK-----EIPRGVVRAL 113 (371)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cc-----cCCHHHHHHH
Confidence 33444466777777777666433 33456555544445556777788899999998888321 11 1222222222
Q ss_pred HHHHh---cCcchhHHHHHHHhhhcCCCchHHH------HHHHHHHHhhcCCCC--CHHHHHHhhhhhcCccccccccCC
Q psy15695 209 VNLLC---RGCVVPVVKYVKQCWQRGDTDISLI------RYFVTEVLEAITPPY--TPEFVQLFLPIVENDEITGTMRGD 277 (299)
Q Consensus 209 V~L~s---~G~ViPVl~~i~~~~~~~~iD~SLi------RyFv~eVLe~i~PPY--S~eFv~~fl~Ll~~~~i~~~l~~~ 277 (299)
|.+.. -.+--.-++++.+.. -.||.++ |-.+.-++| +|| +..-+..|+.++++|+.|.-++.+
T Consensus 114 vaiae~~~D~lr~~cletL~El~---l~~P~lv~~~gG~~~L~~~l~d---~~~~~~~~l~~~lL~lLd~p~tR~yl~~~ 187 (371)
T PF14664_consen 114 VAIAEHEDDRLRRICLETLCELA---LLNPELVAECGGIRVLLRALID---GSFSISESLLDTLLYLLDSPRTRKYLRPG 187 (371)
T ss_pred HHHHhCCchHHHHHHHHHHHHHH---hhCHHHHHHcCCHHHHHHHHHh---ccHhHHHHHHHHHHHHhCCcchhhhhcCC
Confidence 22221 112222334444332 4444442 334444444 333 345677888888888888877776
Q ss_pred CC
Q psy15695 278 GE 279 (299)
Q Consensus 278 ~~ 279 (299)
-|
T Consensus 188 ~d 189 (371)
T PF14664_consen 188 FD 189 (371)
T ss_pred cc
Confidence 43
Done!