Query psy15695
Match_columns 299
No_of_seqs 82 out of 84
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:06:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4q_A U4/U6 small nuclear rib 26.5 2E+02 0.0068 22.0 6.7 65 198-269 16-81 (92)
2 1x5b_A Signal transducing adap 25.2 1.5E+02 0.0051 24.7 6.3 50 161-214 56-106 (163)
3 4at7_A Interleukin enhancer-bi 22.6 1.3E+02 0.0046 28.8 6.0 58 158-220 196-257 (364)
4 4ffb_C Protein STU2; tubulin f 20.3 1.9E+02 0.0066 24.8 6.2 95 94-191 118-217 (278)
5 2ilr_A Protein FACE, fanconi a 14.4 4.3E+02 0.015 24.1 7.1 62 203-267 164-227 (264)
6 2iqc_A Protein FACF, fanconi a 14.2 83 0.0028 28.0 2.2 47 135-187 90-137 (210)
7 2qk2_A LP04448P; mini spindles 13.9 5.3E+02 0.018 21.2 8.4 95 92-190 111-209 (242)
8 4at7_B NF90, interleukin enhan 13.1 2.6E+02 0.009 26.9 5.6 57 156-219 228-288 (383)
9 1pi1_A MOB1A; mitotic EXIT net 12.9 1.5E+02 0.0053 25.5 3.6 35 134-168 86-122 (185)
10 3zta_A MTR, anti-sigma-factor 12.8 1.3E+02 0.0043 24.4 2.8 29 198-226 56-84 (146)
No 1
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.55 E-value=2e+02 Score=22.01 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhcCcchh-HHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcCcc
Q psy15695 198 LEMRKMLLDRMVNLLCRGCVVP-VVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDE 269 (299)
Q Consensus 198 lElkr~ilD~mV~L~s~G~ViP-Vl~~i~~~~~~~~iD~SLiRyFv~eVLe~i~PPYS~eFv~~fl~Ll~~~~ 269 (299)
-.+|.+|-+.+..++ |.-=+ |++||..+.+ ...|+. ..+.++-++...+ ...|+..+-.++.+..
T Consensus 16 ~~lkpWI~kkv~e~L--G~eD~~lVd~i~~~l~-~~~dpk---~l~~~L~~fLd~~-a~~Fv~eLW~lL~~aq 81 (92)
T 1x4q_A 16 DELKPWIEKTVKRVL--GFSEPTVVTAALNCVG-KGMDKK---KAADHLKPFLDDS-TLRFVDKLFEAVEEGR 81 (92)
T ss_dssp HHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHH-TTCCHH---HHHHHHTTTTGGG-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH-cCCCHH---HHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Confidence 467888888888877 33333 6788888774 566875 5566666666667 9999999999997643
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=25.21 E-value=1.5e+02 Score=24.66 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHH-HHHHHHHHHHHhc
Q psy15695 161 ALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMR-KMLLDRMVNLLCR 214 (299)
Q Consensus 161 ~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElk-r~ilD~mV~L~s~ 214 (299)
+|-+.|..++|.-.-..|.+|..+..++|...- .|+. |.++|.|+-|+..
T Consensus 56 al~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh----~evas~~Fl~el~~l~~~ 106 (163)
T 1x5b_A 56 AIMKRVNHKVPHVALQALTLLGACVANCGKIFH----LEVCSRDFATEVRAVIKN 106 (163)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHH----HHHTSHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH----HHHhhHHHHHHHHHHHcc
Confidence 455666667777777788888888888764321 2333 7888888888874
No 3
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=22.61 E-value=1.3e+02 Score=28.82 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcch---hhHHHHHHHHH-HHhccCChhHHHHHHHHHHHHHHHHHHHHhcCcchhH
Q psy15695 158 THLALLDEVVTCHTF---LHHKVLQLFIE-LFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPV 220 (299)
Q Consensus 158 v~L~LLdeIa~~HP~---lr~~Vl~lL~~-l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ViPV 220 (299)
+.+.||+..+.+.|. |.+-.+++|+. ..++. +.-+++.. -.-+.|...+++.|+.+|-
T Consensus 196 ~lIRIlkDlc~R~~~w~pL~~waLELL~~~Ai~s~-~~~~~l~~----~~afRRVLElLAsGillp~ 257 (364)
T 4at7_A 196 VLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNN-PTRQPLAL----NVAYRRCLQILAAGLFLPG 257 (364)
T ss_dssp HHHHHHHHHHHHCGGGTTCCHHHHHHHHHHHHHSS-TTSSCCCH----HHHHHHHHHHHHTTTTSTT
T ss_pred eeehhhHHHHHhcCCcCCCCHHHHHHHHHHHHhcC-CCCCCcCH----HHHHHHHHHHHHhCcccCC
Confidence 578999999999998 77788888887 44441 11111100 1235567789999999983
No 4
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=20.30 E-value=1.9e+02 Score=24.83 Aligned_cols=95 Identities=9% Similarity=0.148 Sum_probs=56.0
Q ss_pred HHH-HHHHHHHHhhcCCCCchhHHHHHHHHhhhcccCceeehhhHHHHhhhcCccccccccCCchh---HH-HHHHHHHH
Q psy15695 94 SDL-FAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPT---HL-ALLDEVVT 168 (299)
Q Consensus 94 ~t~-~Aie~a~~Ic~~~~~~~el~~el~~L~~~i~~PvVA~GVL~wv~~~l~~ps~~~l~~~stpv---~L-~LLdeIa~ 168 (299)
.++ .|++....++........++.++..... -+-|-+-++.+.|+...+.+-.. +.. ...+. .+ .+.+-+..
T Consensus 118 ~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~-~Knpkv~~~~l~~l~~~l~~fg~-~~~-~~k~~l~~i~~~l~k~l~d 194 (278)
T 4ffb_C 118 TTKTQSMSCILSLCGLDTSITQSVELVIPFFE-KKLPKLIAAAANCVYELMAAFGL-TNV-NVQTFLPELLKHVPQLAGH 194 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGG-CSCHHHHHHHHHHHHHHHHHHTT-TTC-CHHHHHHHHGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHhCC-CcC-CchhHHHHHHHHHHHHHhC
Confidence 443 4677766666655455555544443322 24588889999999998853110 100 00111 11 34455667
Q ss_pred hcchhhHHHHHHHHHHHhccCCh
Q psy15695 169 CHTFLHHKVLQLFIELFESKQDE 191 (299)
Q Consensus 169 ~HP~lr~~Vl~lL~~l~e~~~~~ 191 (299)
..|.-|....+++..++...|..
T Consensus 195 ~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 195 GDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTC----
T ss_pred CcHHHHHHHHHHHHHHHHHhCcc
Confidence 89999999999999999876643
No 5
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=14.35 E-value=4.3e+02 Score=24.13 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCC--HHHHHHhhhhhcC
Q psy15695 203 MLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYT--PEFVQLFLPIVEN 267 (299)
Q Consensus 203 ~ilD~mV~L~s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~eVLe~i~PPYS--~eFv~~fl~Ll~~ 267 (299)
.++.+.+.+.=....++|+..+-+ ++..+|...+-.++..+.+ .+|+|| ..|...++.++..
T Consensus 164 lll~~iL~l~WtE~~~~Vlq~lL~--~k~~L~~~~i~~Lv~~L~~-~a~~~skSlkFakLll~~itk 227 (264)
T 2ilr_A 164 LMLGQILELPWKEETFLVLQSLLE--RQVEMTPEKFSVLMEKLCK-KGLAATTSMAYAKLMLTVMTK 227 (264)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHT--TCCCCCHHHHHHHHHHHHC------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHH-HhHHhhcccHHHHHHHHHHHH
Confidence 344444445555678999999999 8899999999999987765 557775 5788888888864
No 6
>2iqc_A Protein FACF, fanconi anemia group F protein; heat-like repeat, DNA-damage, complex subunit, protein binding; 2.40A {Homo sapiens}
Probab=14.18 E-value=83 Score=27.99 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=33.7
Q ss_pred hhHHHHhhhcCcccc-ccccCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhc
Q psy15695 135 VIRWVECTVTEPSYF-KLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFES 187 (299)
Q Consensus 135 VL~wv~~~l~~ps~~-~l~~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~ 187 (299)
+|+|+-.. ++-+ ..| .-+.-.+|.-++.|||.++..-+++|..+=.+
T Consensus 90 LL~WLLe~---~~~l~afc---~~lp~~lLaslagr~~~ls~aYl~lL~~WG~~ 137 (210)
T 2iqc_A 90 LVHWLLGN---SEVFAAFC---RALPAGLLTLVTSRHPALSPVYLGLLTDWGQR 137 (210)
T ss_dssp HHHHHHHC---HHHHHHHH---HHSCHHHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHhC---hHHHHHHH---HhCCHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 89998766 3222 121 11234689999999999999999999986443
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=13.89 E-value=5.3e+02 Score=21.17 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred ChHHHHHHHHH-HHhhcCCCCchhHHHHHHHHhhhcccCceeehhhHHHHhhhcC--cc-ccccccCCchhHHHHHHHHH
Q psy15695 92 SESDLFAIEKV-HSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTE--PS-YFKLCTEHTPTHLALLDEVV 167 (299)
Q Consensus 92 n~~t~~Aie~a-~~Ic~~~~~~~el~~el~~L~~~i~~PvVA~GVL~wv~~~l~~--ps-~~~l~~~stpv~L~LLdeIa 167 (299)
+..++++...| .++++.. +...++..+...... +.|-+-.+++.|+...+.. |. ++... ...+.=.|+.-+.
T Consensus 111 ~~~vr~~a~~aL~~~~~~~-~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~--l~~l~p~l~~~l~ 186 (242)
T 2qk2_A 111 KPNVVTALREAIDAIYAST-SLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKL--LKLLTTSLVKTLN 186 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHH--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHH--HHHHHHHHHHHhc
Confidence 33555443333 3344432 334444333333222 2467778888888887644 32 21100 0111123344445
Q ss_pred HhcchhhHHHHHHHHHHHhccCC
Q psy15695 168 TCHTFLHHKVLQLFIELFESKQD 190 (299)
Q Consensus 168 ~~HP~lr~~Vl~lL~~l~e~~~~ 190 (299)
+.++..|..+...+..+...-++
T Consensus 187 D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 187 EPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCChHHHHHHHHHHHHHHHHcCH
Confidence 67777777777777776665443
No 8
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=13.07 E-value=2.6e+02 Score=26.94 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHhcch---hhHHHHHHHHH-HHhccCChhHHHHHHHHHHHHHHHHHHHHhcCcchh
Q psy15695 156 TPTHLALLDEVVTCHTF---LHHKVLQLFIE-LFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVP 219 (299)
Q Consensus 156 tpv~L~LLdeIa~~HP~---lr~~Vl~lL~~-l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ViP 219 (299)
+-+.+.||+..+.+.|. |.+-.+++|+. +.+..+..+.+ -.-+.|...+++.|+.+|
T Consensus 228 ~~ilIRilkdlc~R~~~~~pL~~waLELL~~~ai~s~~~~l~~-------~~afRRVLEllasG~lLp 288 (383)
T 4at7_B 228 CVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGA-------GEALRRVLECLASGIVMP 288 (383)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGTTHHHHHHHHHHHHTSSSCCCH-------HHHHHHHHHHHHTTTTST
T ss_pred ceEEeehhhHHHHhcCCcCCCcHhHHHHHHHHHhhCCCCCCCH-------HHHHHHHHHHHhcCcccC
Confidence 45788999999999998 55678888887 55543322221 123556778999999986
No 9
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=12.89 E-value=1.5e+02 Score=25.48 Aligned_cols=35 Identities=9% Similarity=0.300 Sum_probs=23.3
Q ss_pred hhhHHHHhhhcCccccccc-c-CCchhHHHHHHHHHH
Q psy15695 134 GVIRWVECTVTEPSYFKLC-T-EHTPTHLALLDEVVT 168 (299)
Q Consensus 134 GVL~wv~~~l~~ps~~~l~-~-~stpv~L~LLdeIa~ 168 (299)
-+|.|++..+.|+++|=.- + ...+-+...++.|..
T Consensus 86 ~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~r 122 (185)
T 1pi1_A 86 YLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 122 (185)
T ss_dssp HHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHH
Confidence 5799999999999999322 2 223345566665554
No 10
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=12.82 E-value=1.3e+02 Score=24.40 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHH
Q psy15695 198 LEMRKMLLDRMVNLLCRGCVVPVVKYVKQ 226 (299)
Q Consensus 198 lElkr~ilD~mV~L~s~G~ViPVl~~i~~ 226 (299)
.|+.|.+-|..--|+..||.+.|+..|-.
T Consensus 56 selekeiadkvkimfaqgyhievlqlile 84 (146)
T 3zta_A 56 SELEKEIADKVKIMFAQGYHIEVLQLILE 84 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 36778888888888888888888877654
Done!