Query psy15695
Match_columns 299
No_of_seqs 82 out of 84
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 19:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15695.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15695hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b0na1 a.34.1.1 (A:74-108) Si 22.5 6.8 0.0005 23.9 -0.5 22 271-292 10-31 (35)
2 d1jt6a2 a.121.1.1 (A:73-187) M 14.4 2.1E+02 0.015 20.5 7.2 68 168-249 19-87 (115)
3 d1dvpa1 a.118.9.2 (A:1-145) Hr 14.1 1.2E+02 0.009 22.5 5.2 52 161-216 46-98 (145)
4 d1uw4b_ a.118.1.14 (B:) Regula 12.7 2.2E+02 0.016 22.6 6.9 79 156-251 57-135 (248)
5 d1wi9a_ a.4.5.47 (A:) Hypothet 12.7 46 0.0033 23.2 1.9 19 278-296 4-22 (72)
6 d1h2vc1 a.118.1.14 (C:29-290) 11.1 3.7E+02 0.027 21.6 9.4 104 156-267 55-170 (262)
7 d1h2vc1 a.118.1.14 (C:29-290) 10.4 2.7E+02 0.019 22.5 6.6 86 157-251 38-130 (262)
8 d1juqa_ a.118.9.2 (A:) ADP-rib 10.3 1.6E+02 0.012 22.1 4.8 64 161-228 43-116 (151)
9 d1brwa1 a.46.2.1 (A:1-70) Pyri 9.9 1.3E+02 0.0093 19.5 3.5 45 219-266 2-46 (70)
10 d2g3ba1 a.4.1.9 (A:2-73) Putat 9.8 1.2E+02 0.0089 19.4 3.4 43 199-243 2-45 (72)
No 1
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=22.55 E-value=6.8 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=17.8
Q ss_pred cccccCCCCCCcHHHHHHHhhh
Q psy15695 271 TGTMRGDGENDPVSEFIVHCKA 292 (299)
Q Consensus 271 ~~~l~~~~~~~~v~eFi~~C~~ 292 (299)
.++|.||.-.+.+.||+++-|=
T Consensus 10 keAM~SGvSK~QFrEflef~kW 31 (35)
T d1b0na1 10 RDAMTSGVSKKQFREFLDYQKW 31 (35)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHH
Confidence 4678888778999999998763
No 2
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=14.43 E-value=2.1e+02 Score=20.48 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=38.1
Q ss_pred HhcchhhHHHHHHHHHHHhccCChhHHH-HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHHH
Q psy15695 168 TCHTFLHHKVLQLFIELFESKQDELEIL-VQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVL 246 (299)
Q Consensus 168 ~~HP~lr~~Vl~lL~~l~e~~~~~~d~l-~~lElkr~ilD~mV~L~s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~eVL 246 (299)
..||.+|.. .++......+.+.. ...++++...+.+..++..|. +-..-...|++++..++..++
T Consensus 19 ~~~Pl~~a~-----~EF~~~~~~~~e~~~~i~~lr~~y~~~~~~Ii~eGi---------~~G~f~~~d~~~~~~~il~~l 84 (115)
T d1jt6a2 19 YYYPLQNAI-----IEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGN---------LNGEWSINDVNAVSKIAANAV 84 (115)
T ss_dssp HTCTTHHHH-----HHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH---------TTTSCCCSCHHHHHHHHHHHH
T ss_pred hcCHHHHHH-----HHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HCCceeccCHHHHHHHHHHHH
Confidence 357766643 35555545444444 346778888888887776652 111123346666666666555
Q ss_pred hhc
Q psy15695 247 EAI 249 (299)
Q Consensus 247 e~i 249 (299)
.-+
T Consensus 85 ng~ 87 (115)
T d1jt6a2 85 NGI 87 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 3
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.15 E-value=1.2e+02 Score=22.48 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=31.8
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHH-HHHHHHHHHHHHhcCc
Q psy15695 161 ALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEM-RKMLLDRMVNLLCRGC 216 (299)
Q Consensus 161 ~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lEl-kr~ilD~mV~L~s~G~ 216 (299)
+|-+.+...+|.-.-..|.+|..+..++|...-. |+ .+.++|.++-++...-
T Consensus 46 al~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~----~i~s~~fl~~l~~l~~~~~ 98 (145)
T d1dvpa1 46 AIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE----EVFTKENCEMFSSFLESTP 98 (145)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH----HHSSHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHH----HHhhHHHHHHHHHHhcCCC
Confidence 4555555556667777788888888886654321 22 3556777776665543
No 4
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.74 E-value=2.2e+02 Score=22.60 Aligned_cols=79 Identities=9% Similarity=-0.017 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCch
Q psy15695 156 TPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDI 235 (299)
Q Consensus 156 tpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~ViPVl~~i~~~~~~~~iD~ 235 (299)
.|.|-.|+..++.+||.....+++-+.+-|.......+. -..+|. +-.+.+|..+++.+-+..
T Consensus 57 i~~yA~l~a~L~~~~~~f~~~~id~l~e~f~~~~e~~~~---~~~~r~--------------~~~v~figeLy~~~~v~~ 119 (248)
T d1uw4b_ 57 IHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQP---KFNQRR--------------ISSAKFLGELYNYRMVES 119 (248)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCG---GGHHHH--------------HHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH--------------HHHHHHHHHHHHHccCcH
Confidence 678889999999999998888888877765542221111 011221 123566777777777777
Q ss_pred HHHHHHHHHHHhhcCC
Q psy15695 236 SLIRYFVTEVLEAITP 251 (299)
Q Consensus 236 SLiRyFv~eVLe~i~P 251 (299)
+++-+-+.++|..-.+
T Consensus 120 ~~i~~~l~~Ll~~~~~ 135 (248)
T d1uw4b_ 120 AVIFRTLYSFTSFGVN 135 (248)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 7777777777765444
No 5
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.67 E-value=46 Score=23.23 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHhhhhccc
Q psy15695 278 GENDPVSEFIVHCKAHFVS 296 (299)
Q Consensus 278 ~~~~~v~eFi~~C~~~~~~ 296 (299)
+.+..+++||+|.|.++++
T Consensus 4 ~~q~lL~~FI~~Ik~~Kvv 22 (72)
T d1wi9a_ 4 GSSGFLTEFINYIKKSKVV 22 (72)
T ss_dssp SSCCHHHHHHHHHHHCSEE
T ss_pred chHHHHHHHHHHHHHCCEe
Confidence 3457899999999998764
No 6
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.12 E-value=3.7e+02 Score=21.57 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhcCc-----chhHHHHHHHhhhc
Q psy15695 156 TPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC-----VVPVVKYVKQCWQR 230 (299)
Q Consensus 156 tpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~s~G~-----ViPVl~~i~~~~~~ 230 (299)
+|+|=+|+.-+-.+.|..-..+++-+..-|+...++.+- .-.|.++-.+.+|..+|. ++.+++.+-+-.
T Consensus 55 ~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~----~~~~~llrFla~L~n~~Vv~~~~i~~ll~~ll~~~-- 128 (262)
T d1h2vc1 55 LTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNY----NEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVT-- 128 (262)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHccCCCCcHhHHHHHHHHHHHHH--
Confidence 677777888888888888877777777766653333221 345677888888876665 445555555433
Q ss_pred CCCchHHHH--HHHHHHHhhcCCCCCHH-----HHHHhhhhhcC
Q psy15695 231 GDTDISLIR--YFVTEVLEAITPPYTPE-----FVQLFLPIVEN 267 (299)
Q Consensus 231 ~~iD~SLiR--yFv~eVLe~i~PPYS~e-----Fv~~fl~Ll~~ 267 (299)
.+.|.+..| +++.-||..+ ||... +-..+-.++++
T Consensus 129 ~e~~~~~~~~d~~~~~vL~~L--P~~g~~l~~~~~~~~~~ll~~ 170 (262)
T d1h2vc1 129 QEEDVPQVRRDWYVYAFLSSL--PWVGKELYEKKDAEMDRIFAN 170 (262)
T ss_dssp GCSSCCHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCchhHHHHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHH
Confidence 233333333 4555555554 55543 33344455543
No 7
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.38 E-value=2.7e+02 Score=22.51 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHH----hcCc---chhHHHHHHHhhh
Q psy15695 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLL----CRGC---VVPVVKYVKQCWQ 229 (299)
Q Consensus 157 pv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV~L~----s~G~---ViPVl~~i~~~~~ 229 (299)
...+..+-+.+..+|.+ ..+...|+.++..... |+-+.++.+++.-+ ..|- +.=++.++..+.+
T Consensus 38 ~~il~~l~~~~~~~P~k-~~~yA~Lv~llN~~~~--------e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n 108 (262)
T d1h2vc1 38 SKILRLLCTVARLLPEK-LTIYTTLVGLLNARNY--------NFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVN 108 (262)
T ss_dssp HHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcch-HHHHHHHHHHHccCcH--------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Confidence 34567777888888887 4457777788877554 34444444444443 3332 3336777788777
Q ss_pred cCCCchHHHHHHHHHHHhhcCC
Q psy15695 230 RGDTDISLIRYFVTEVLEAITP 251 (299)
Q Consensus 230 ~~~iD~SLiRyFv~eVLe~i~P 251 (299)
.+-++.+.+.-+...+++.+.-
T Consensus 109 ~~Vv~~~~i~~ll~~ll~~~~e 130 (262)
T d1h2vc1 109 CHVIAAPSMVAMFENFVSVTQE 130 (262)
T ss_dssp TTSBCHHHHHHHHHHHHHGGGC
T ss_pred CCCCcHhHHHHHHHHHHHHHhh
Confidence 7888888888888888875543
No 8
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.33 E-value=1.6e+02 Score=22.11 Aligned_cols=64 Identities=9% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHH-HHHHHHHHHHHHhcCc----c----h-hHHHHHHHhh
Q psy15695 161 ALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEM-RKMLLDRMVNLLCRGC----V----V-PVVKYVKQCW 228 (299)
Q Consensus 161 ~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lEl-kr~ilD~mV~L~s~G~----V----i-PVl~~i~~~~ 228 (299)
+|-+.+...+|.-.-..|.+|..+...+|...-. |+ .|.++|.++-|++..+ + - -+++.+..|.
T Consensus 43 ai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~----evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa 116 (151)
T d1juqa_ 43 LLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN----EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 116 (151)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH----HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHH----HHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHH
Confidence 3445555555555666788888888887654321 22 6678899999986532 1 1 1555666665
No 9
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.87 E-value=1.3e+02 Score=19.52 Aligned_cols=45 Identities=7% Similarity=-0.026 Sum_probs=31.5
Q ss_pred hHHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhc
Q psy15695 219 PVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVE 266 (299)
Q Consensus 219 PVl~~i~~~~~~~~iD~SLiRyFv~eVLe~i~PPYS~eFv~~fl~Ll~ 266 (299)
++.+.|++..+++.++..-++.|+.++++-=. |+.=+..|+--+.
T Consensus 2 ~~~eii~k~~~g~~Ls~~E~~~~~~~i~~g~~---s~~qi~afL~al~ 46 (70)
T d1brwa1 2 RMVDLIAKKRDGKALTKEEIEWIVRGYTNGDI---PDYQMSALAMAIY 46 (70)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSS---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Confidence 35567777777899999999999999876443 3444455555443
No 10
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=9.77 E-value=1.2e+02 Score=19.39 Aligned_cols=43 Identities=23% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHH-hcCcchhHHHHHHHhhhcCCCchHHHHHHHH
Q psy15695 199 EMRKMLLDRMVNLL-CRGCVVPVVKYVKQCWQRGDTDISLIRYFVT 243 (299)
Q Consensus 199 Elkr~ilD~mV~L~-s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~ 243 (299)
|.|+.|+|-.+.|+ ..|+---.++-|.+. .+---.++-+||=+
T Consensus 2 err~~Il~aa~~l~~~~G~~~~ti~~Ia~~--agvs~~~ly~~F~~ 45 (72)
T d2g3ba1 2 ERRDAILKASATAIAQRGIRGLRVNDVAEV--AGVSPGLLYYHFKD 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--HTSCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHH--hCcCHHHHHHHCcC
Confidence 57788888888877 667777778888773 36666777777744
Done!