RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15695
(299 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 4e-07
Identities = 51/351 (14%), Positives = 93/351 (26%), Gaps = 122/351 (34%)
Query: 8 IHLLCKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYES---IYEPINPRPPSDL---SSRS 61
IH L + Q + T +I + + P + + S L
Sbjct: 101 IHALAAKLLQENDTTLVKTKELI--------KNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 62 NYSLYS-----SNIPPPEAEVDALTDLLVHSLDTSSESDLF--AIEKVHSICNSSKSSNE 114
N L + N + + L DL + DL + E + + ++ + +
Sbjct: 153 NAQLVAIFGGQGNT---DDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 115 LIAEITTLFHCIRYPVVSVGVIRWVECTVTEPS--YFKLCTEHTP----THLALLDEVVT 168
+ + + ++ W+E P Y P LA VVT
Sbjct: 208 V------------FTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVT 252
Query: 169 CHTF-LHHKVLQ----------------LFI-------ELFESKQDELEILVQLEMR--- 201
L+ + I F S + + +L + +R
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 202 ---------KMLLDRMVN--------LLCRGCVVPVV-KYVKQCWQRGDTD----ISLI- 238
+L D + N L V YV + ISL+
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 239 --RYFV----TEVLEAITP----------------PYT---PEFVQLFLPI 264
+ V + L + P++ +F FLP+
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Score = 36.2 bits (83), Expect = 0.013
Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 67/155 (43%)
Query: 13 KPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIY-EPINPRPPSDLSSRSNYSLYSS--N 69
K + F P + P + S P + DL ++N S +
Sbjct: 413 KLKFSN-RFLP------VASP--------FHSHLLVPASDLINKDLV-KNNVSFNAKDIQ 456
Query: 70 IPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYP 129
IP V+ DT SDL S + I
Sbjct: 457 IP-------------VY--DTFDGSDL------------RVLSGSISERI---------- 479
Query: 130 VVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLD 164
V+C + P ++ T+ TH +LD
Sbjct: 480 ---------VDCIIRLPVKWETTTQFKATH--ILD 503
Score = 34.3 bits (78), Expect = 0.050
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 63/211 (29%)
Query: 33 PQSTQSSSMYESIYEPINPRP-P----SDLS--------SRSNYSLYSSNIPPPEAEVDA 79
P ++ S+ E E P P S+L+ +++N L P +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-------PAGKQVE 367
Query: 80 LTDLLVHSLD----TSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGV 135
++ LV+ + L+ + ++ + S + I R S
Sbjct: 368 IS--LVNGAKNLVVSGPPQSLYGL--NLTLRKAKAPSGLDQSRIP---FSERKLKFSN-- 418
Query: 136 IRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQ-LFIELFESKQDELEI 194
R++ V P F H+ LL + + L +++I
Sbjct: 419 -RFL--PVASP--F-----HSH----LLVPAS-------DLINKDLVKNNVSFNAKDIQI 457
Query: 195 LV-----QLEMRKM---LLDRMVNLLCRGCV 217
V ++R + + +R+V+ + R V
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 30.4 bits (68), Expect = 0.87
Identities = 37/282 (13%), Positives = 77/282 (27%), Gaps = 110/282 (39%)
Query: 52 RP---------PSDLSSRSNYSLYS-------SNIPPPEAEVDALTDLLVHSLDTSSESD 95
RP L +++ + S +P P T+ + ++ ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP-------TEGFAADDEPTTPAE 59
Query: 96 LFA------IEKVHSICNSSKSSNELIAEITTLF----------HCI--------RYPVV 131
L V + ++++ T F H + +V
Sbjct: 60 LVGKFLGYVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 132 SVG-VIRWVECTVTEPSYFKLCT-----EHTPTHLALLDEVVTCHTFLHHKVLQLF---- 181
+I+ +Y ++ AL V + +++ +F
Sbjct: 118 KTKELIK---------NYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQG 164
Query: 182 ---------IELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQC----W 228
+L+++ + L++ + L + L R + + + W
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIK-FSAETLSE-----LIRTTLDAEKVFTQGLNILEW 218
Query: 229 -----QRGDTD------IS--LI------RYFVTEVLEAITP 251
D D IS LI Y VT L TP
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Score = 29.2 bits (65), Expect = 1.8
Identities = 37/236 (15%), Positives = 64/236 (27%), Gaps = 109/236 (46%)
Query: 21 FHPPVTYTVIFQPQSTQ------SSSMYESIYEPINPRPPSDLSSRSNY---------SL 65
F ++ Q TQ + +E DL S+ SL
Sbjct: 1719 FRSEKG--LLSATQFTQPALTLMEKAAFE------------DLKSKGLIPADATFAGHSL 1764
Query: 66 --YS---SNIPPPEAEVDALTDL--LVH-----------------------SLDTSSESD 95
Y+ S A+V ++ L +V +++ +
Sbjct: 1765 GEYAALAS-----LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 96 LFAIEKVHSICNS-SKSSNELIAEITTLFHCIRY--P---VVSVGVIRWVECTVTEPSYF 149
F+ E + + K + L+ EI + Y V+ G
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLV-EI------VNYNVENQQYVAAG--------------- 1857
Query: 150 KLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLL 205
L LD V F+ + + + IEL +S E E+ L
Sbjct: 1858 ---------DLRALDTVTNVLNFIKLQKIDI-IELQKSLSLE-------EVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 8e-04
Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 63/257 (24%)
Query: 41 MYESI-YEPINPRPPSDLSSRSNYSLYSS-------NIPPPEAEVDALTDLLVHSLDTSS 92
+ I E P + + LY+ N+ + L L L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL---LELRP 149
Query: 93 ESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSV--GVIRWV---ECTVTEP- 146
++ + + S K+ + ++ C+ Y V I W+ C E
Sbjct: 150 AKNVL----IDGVLGSGKTW--VALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 147 --SYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRK-- 202
KL + P + D H ++L I S Q EL L++ + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD---------HSSNIKLRI---HSIQAELRRLLKSKPYENC 246
Query: 203 -MLLD--------RMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 253
++L NL C+ + K V TD L+ +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--------TDFLSAATTTHISLDHHSMTL 298
Query: 254 TP-EFVQLFLPIVENDE 269
TP E L L ++
Sbjct: 299 TPDEVKSLLLKYLDCRP 315
Score = 37.5 bits (86), Expect = 0.005
Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 56/221 (25%)
Query: 73 PEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYP--- 129
PE ++ L LL + +D + S + N + + AE+ L Y
Sbjct: 195 PETVLEMLQKLL-YQIDPNWTS------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 130 -----VVSVGVIRW--VECT--VT--EPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVL 178
V + + C +T + T TH++L +T +V
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVK 304
Query: 179 QLFIELFESKQDELEILVQLEMRK-------MLLDRMVNLLCRGCVVPVVKYVKQCWQRG 231
L ++ + + +L E+ ++ + + + L W+
Sbjct: 305 SLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLAT------WDN----WKHV 350
Query: 232 DTD--ISLIRYFVTEVLEAITPPYTPEFVQLF--LPIVEND 268
+ D ++I L + P E+ ++F L +
Sbjct: 351 NCDKLTTIIESS----LNVLEP---AEYRKMFDRLSVFPPS 384
Score = 29.4 bits (65), Expect = 1.5
Identities = 43/286 (15%), Positives = 85/286 (29%), Gaps = 93/286 (32%)
Query: 49 INPRPPS-------DLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDL----- 96
NPR S D + + + D LT ++ SL+ ++
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHV--------NCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 97 -FAI--------EKVHSI--CNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTE 145
++ + S+ + KS ++ +Y S+ + E T++
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-----KLHKY---SLVEKQPKESTISI 428
Query: 146 PS-YFKL---CTEHTPTHLALLDEVVTCHTFLHHKVLQLFIE----------LFESKQDE 191
PS Y +L H +++D TF ++ +++ L + E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 192 LEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITP 251
L R + LD ++++Q IR+ +
Sbjct: 489 RMTL----FRMVFLD--------------FRFLEQ----------KIRH--DSTAWNASG 518
Query: 252 PYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQ 297
QL I +NDP E +V+ F+ +
Sbjct: 519 SILNTLQQL---KFYKPYIC-------DNDPKYERLVNAILDFLPK 554
Score = 29.1 bits (64), Expect = 2.6
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 28/112 (25%)
Query: 16 YQTGEFHPPVTYTVIFQ--------PQSTQSSSMYESIY--------------EPINPRP 53
+ + + PP + + + +++ ++ N
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 54 P--SDLSSRSNYSLY-SSNIPPPEAEVDALTDLLV---HSLDTSSESDLFAI 99
+ L Y Y N P E V+A+ D L +L S +DL I
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Score = 27.9 bits (61), Expect = 5.1
Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 46/181 (25%)
Query: 159 HLALLDEVVTCHTFLHHKVLQLFIELFESKQD---------------ELEILVQLEMRKM 203
H +D H + + +L +F + F D E++ ++ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 204 LLDRMVNLLCRGCVVPVVKYVKQC-----------WQRGDTDISLI-RYFVTEV--LEAI 249
R+ L V K+V++ + S++ R ++ + L
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 250 TPPYTPEFV---QLFLPIVE-------NDEIT--GTMRGDGE----NDPVSEFIVHCKAH 293
+ V Q +L + + + G + G G+ D + V CK
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMD 181
Query: 294 F 294
F
Sbjct: 182 F 182
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold,
farnesyl diphosphate, metal-binding, lyase, magnesium;
HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A
3lgk_A 3lg5_A*
Length = 382
Score = 30.9 bits (69), Expect = 0.43
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Query: 183 ELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVK--QCWQRGDTDISLI-- 238
E E + + +R + + V V + W
Sbjct: 299 RRVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESG 358
Query: 239 RYFVTEVLEAITPPYTPE 256
RY V + TPPY
Sbjct: 359 RYMVDSWDDRSTPPYVNN 376
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 97
Score = 27.9 bits (62), Expect = 1.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 51 PRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLL 84
P P + +Y N+ P +A V L L
Sbjct: 8 PGSPPGEGAPLAADVYVGNL-PRDARVSDLKRAL 40
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 256 EFVQLFLPIVENDEITG-TMRGDG 278
E+ L I+EN + G +R DG
Sbjct: 234 EYAHLVQAIIENPFLNGEVIRLDG 257
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 28.1 bits (62), Expect = 3.0
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 16 YQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYS 64
+ YT+ E + PR P +L+ +N S
Sbjct: 63 LLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVS 111
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid
biosynthesis, transferase; 1.70A {Escherichia coli}
PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A*
2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Length = 253
Score = 27.5 bits (62), Expect = 5.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 73 PEAEVDALTDLLVHSLDT 90
P EV AL +L V +LD+
Sbjct: 78 PAQEVSALMELFVWALDS 95
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 27.5 bits (61), Expect = 6.5
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 247 EAITPPYTPEFVQLFLPIVENDEITGTM-RGDGENDPVSEFIV 288
E P T EF + + + G+ PVS F
Sbjct: 627 ETKAEPMTNEFFK---------NVVKPILTQQGDKLPVSAFEA 660
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 26.3 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 33 PQSTQSSSMYESIYEPINPRPPSDLSSRSNY---SLYSS 68
+ + SS E+ + P+P + SSR++Y LYSS
Sbjct: 112 SEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIHSGLYSS 150
>3t1e_A Hemagglutinin-neuraminidase; beta-propeller, 4 helix bundle,
neuraminidase membrane protein, ectodomain, hydrolase;
3.30A {Newcastle disease virus}
Length = 537
Score = 27.0 bits (59), Expect = 9.4
Identities = 13/58 (22%), Positives = 14/58 (24%), Gaps = 5/58 (8%)
Query: 84 LVHSLDTSSESDLFAIEKVHSICNSSKSSN-----ELIAEITTLFHCIRYPVVSVGVI 136
VH D I S S S I TT C R P +
Sbjct: 93 PVHDPDYIGGIGKELIVDDTSDVTSFYPSAFQEHLNFIPAPTTGSGCTRIPSFDMSAT 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0859 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,570,538
Number of extensions: 262988
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 25
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)