RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15695
         (299 letters)



>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
          Length = 253

 Score = 28.1 bits (62), Expect = 1.3
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 10/41 (24%)

Query: 247 EAITPPYTPEFVQLFLPIVENDEITGTM-RGDGENDPVSEF 286
           E    P T EF +          +   +    G+  PVS F
Sbjct: 213 ETKAEPMTNEFFK---------NVVKPILTQQGDKLPVSAF 244


>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
           {Escherichia coli [TaxId: 562]}
          Length = 474

 Score = 26.7 bits (58), Expect = 3.9
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 176 KVLQLFIELFESKQDELEILVQLEMRKML-------LDRMVNLLCRGCVVPVVKYVKQCW 228
           + L    ++ E        L      K L       +  +V++                 
Sbjct: 65  ECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAG 124

Query: 229 QRGDTDISLIRYFVTEVLEAITP 251
           +  +   S+IR     V+ +I P
Sbjct: 125 EYLEGHTSMIRRDPLGVVASIAP 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,127,109
Number of extensions: 51407
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 6
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)