BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15696
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 20 LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKR 60
L N +PYLG +LTDL I+ P+ DGL+NF K R
Sbjct: 146 LRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMR 186
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 916 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 970
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 719 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 773
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 719 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 773
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 357 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 411
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 349 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 403
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 351 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 405
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
L L +++ +P+ G +LT++ + P+ L LINF K+RK E+ +
Sbjct: 351 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 405
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 27 TIPYLGTFLTDLTMIDTAIP 46
+IPYLG +L DL ID+A P
Sbjct: 181 SIPYLGIYLLDLIYIDSAYP 200
>pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
Length = 239
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 14 DVKLHDLPNVSNGTIPYLGTFLTDLTMIDTA 44
D+KLHD+P N + L + DL + A
Sbjct: 60 DLKLHDIPTTVNKAMKRLASLGVDLVNVHAA 90
>pdb|2XJU|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae With Mutation S227a
In Complex With Calcium And A1,2-Mannobiose
Length = 258
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 4 DVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPD 47
+ +A+G++ V+L D VS+ Y+ +F DL+ + IPD
Sbjct: 211 NAVAWGTLPISVELPDGTTVSDNFEGYVYSFDDDLSQSNCTIPD 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,158,863
Number of Sequences: 62578
Number of extensions: 70407
Number of successful extensions: 152
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 11
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)