Query psy15696
Match_columns 68
No_of_seqs 103 out of 401
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 19:07:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3629|consensus 99.5 5.6E-15 1.2E-19 115.4 1.8 45 24-68 385-429 (728)
2 smart00147 RasGEF Guanine nucl 99.5 9.7E-15 2.1E-19 100.3 0.8 62 6-67 134-195 (242)
3 cd00155 RasGEF Guanine nucleot 99.4 3E-14 6.5E-19 97.3 0.8 62 6-67 134-196 (237)
4 PF00617 RasGEF: RasGEF domain 99.4 5E-14 1.1E-18 92.2 -0.7 54 7-61 134-188 (188)
5 KOG2378|consensus 98.8 4.5E-10 9.7E-15 86.9 -0.0 46 21-67 480-525 (573)
6 KOG3417|consensus 98.7 2.9E-09 6.3E-14 85.1 1.6 63 5-67 728-792 (840)
7 KOG3542|consensus 98.1 7.7E-07 1.7E-11 72.5 0.9 56 11-67 1000-1056(1283)
8 KOG3417|consensus 97.6 2E-05 4.4E-10 63.4 0.6 64 4-67 342-409 (840)
9 KOG3541|consensus 96.4 0.0023 5.1E-08 49.5 2.3 44 23-66 374-417 (477)
10 PF15070 GOLGA2L5: Putative go 37.0 14 0.0003 29.8 0.5 9 23-31 595-603 (617)
No 1
>KOG3629|consensus
Probab=99.50 E-value=5.6e-15 Score=115.45 Aligned_cols=45 Identities=69% Similarity=1.125 Sum_probs=42.7
Q ss_pred CCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhcC
Q psy15696 24 SNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68 (68)
Q Consensus 24 ~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~~ 68 (68)
+.+.|||||+|||||+|+|++++|++++|+|||+||||+++||.|
T Consensus 385 ~qGtVPyLGtFLtDLvMlDtA~~d~~e~glINFeKRRkEFeVla~ 429 (728)
T KOG3629|consen 385 KQGTVPYLGTFLTDLVMLDTAMNDYPEEGLINFEKRRKEFEVLAK 429 (728)
T ss_pred CCcccchHHHHHHHHHHHhhcccCCcccccchHhhhhHHHHHHHH
Confidence 468999999999999999999999999999999999999999864
No 2
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=99.46 E-value=9.7e-15 Score=100.28 Aligned_cols=62 Identities=34% Similarity=0.530 Sum_probs=52.9
Q ss_pred eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
+...+|++..|........+|||||+|+||+|++++++|+|++.++++|||.|+++++++++
T Consensus 134 ~s~~~n~~~yR~~l~~~~~~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~i~ 195 (242)
T smart00147 134 LSPERNFKNYREALSSCNLPPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEILR 195 (242)
T ss_pred cCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHHHH
Confidence 44567888777655333338999999999999999999999999889999999999999885
No 3
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=99.42 E-value=3e-14 Score=97.25 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=52.5
Q ss_pred eeecCcchhhccccCCC-CCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 6 IAYGSVCRDVKLHDLPN-VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 6 ~~~~~n~~r~r~~~~~~-~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
+...+|++..|...... ..+|||||+|+||+||+++++|+|+++++++|||.|+++++++++
T Consensus 134 ~~~~~n~~~yr~~l~~~~~~~p~IP~lg~~l~dl~~~~e~~~~~~~~~~iN~~K~~~i~~~i~ 196 (237)
T cd00155 134 VDPSRNFKNYRKLLKSVGPNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEILR 196 (237)
T ss_pred hCcHhhHHHHHHHHHhcCCCCCCeeehhHHHHHHHHHHccCCccCcCCCccHHHHHHHHHHHH
Confidence 34456887776655332 278999999999999999999999999989999999999999985
No 4
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=99.37 E-value=5e-14 Score=92.23 Aligned_cols=54 Identities=37% Similarity=0.610 Sum_probs=42.4
Q ss_pred eecCcchhhccccCCCCCC-CCccchhchhchhhhhhccCCCCCCCCccchhhhHh
Q psy15696 7 AYGSVCRDVKLHDLPNVSN-GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRK 61 (68)
Q Consensus 7 ~~~~n~~r~r~~~~~~~~~-pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k 61 (68)
..++|++..|... .++.+ |||||+|+||+|++++++|+|+++++++|||.|+||
T Consensus 134 ~~~~~~~~yr~~~-~~~~~~~~IP~lg~~l~dl~~~~~~~~~~~~~~liN~~K~r~ 188 (188)
T PF00617_consen 134 SPSNNYKNYREAL-KKCNPQPCIPFLGIFLKDLIFIEEGNPDFIDDGLINFEKCRK 188 (188)
T ss_dssp HHHHHHHHHHHHH-HTSTSSSSB--HHHHHHHHHHHHHHS-SECTTTCEEHHHHHH
T ss_pred ccchhhHHHHHhh-cccccCceecccHHHHHHHHHHHhcCCCCCCCccCCcccccC
Confidence 3456777777544 34455 999999999999999999999999989999999986
No 5
>KOG2378|consensus
Probab=98.85 E-value=4.5e-10 Score=86.89 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=42.4
Q ss_pred CCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 21 PNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 21 ~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
++.+||.|||....|+|+||+++||..+++ |++||+|+++++++.+
T Consensus 480 ~km~pp~ipf~PlllkD~tf~heGnkt~v~-glVNfEKmhmiA~~~R 525 (573)
T KOG2378|consen 480 SKMSPPYIPFMPLLLKDLTFIHEGNKTFVD-GLVNFEKMHMIAKTAR 525 (573)
T ss_pred HhcCCCCCCccchhhhhceeeccchHHHHh-cchhHHHHHHHHHHHH
Confidence 457899999999999999999999999998 7999999999998753
No 6
>KOG3417|consensus
Probab=98.75 E-value=2.9e-09 Score=85.09 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=47.3
Q ss_pred eeeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCC--CccchhhhHhHHhhhc
Q psy15696 5 VIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPD--GLINFDKKRKEFEVLA 67 (68)
Q Consensus 5 ~~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~--~lINf~K~~k~~~vi~ 67 (68)
+.+.-.|..+.|......+.+||+||+|++|+||||+++||||++++ +.++|.|+.++..+++
T Consensus 728 ~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~dltf~~~gnpd~~~~~~~~~~~~~~~~~~~~~~ 792 (840)
T KOG3417|consen 728 LVIDKSNSSTYRRALLSVPEPPCVPFLGVILQDLTFVHTGNPDYLDSVVNHGKFDKRTNIKDIVQ 792 (840)
T ss_pred chhcccccHHHHHHHhcCCCCCCcCceeEEeecceeecCCCCCccccccchhHHHHHHHHHHHHH
Confidence 34444566666666556688999999999999999999999999974 5666666666665553
No 7
>KOG3542|consensus
Probab=98.12 E-value=7.7e-07 Score=72.48 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=45.6
Q ss_pred cchhhccccCC-CCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 11 VCRDVKLHDLP-NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 11 n~~r~r~~~~~-~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
|-.+.|.+..+ ...||.||.+.+.=+||||+|+||..+++ ++|||+|.|++++-|+
T Consensus 1000 NMaKYRn~L~sq~~qPPiiPlfPViKKDlTFlHeGNdskvd-gLvNFEKLRmIaKeIR 1056 (1283)
T KOG3542|consen 1000 NMAKYRNHLASQAQQPPIIPLFPVIKKDLTFLHEGNDSKVD-GLVNFEKLRMIAKEIR 1056 (1283)
T ss_pred hHHHHHHHHHhhccCCCccccchheeccceeeecCCchhhh-ccccHHHHHHHHHHHH
Confidence 43444443332 25689999999999999999999999998 7999999999998775
No 8
>KOG3417|consensus
Probab=97.58 E-value=2e-05 Score=63.36 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=53.6
Q ss_pred eeeeecCcchhhccccCCCCCCCCccchhchhch-hhhhhccCCCCCC-CC--ccchhhhHhHHhhhc
Q psy15696 4 DVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTD-LTMIDTAIPDTLP-DG--LINFDKKRKEFEVLA 67 (68)
Q Consensus 4 ~~~~~~~n~~r~r~~~~~~~~~pciPflG~~L~D-Ltfid~gnpd~l~-~~--lINf~K~~k~~~vi~ 67 (68)
.+++.++|+...|.....-...||+|++|+||.| ++.++.++|+++. .+ .++|.|+..+++|++
T Consensus 342 ~~~~~~~~~~~yr~~l~~~~~~~~ip~~~~~l~d~~~~l~~~~p~~~~~~~~~e~~~~~~~~~~~i~~ 409 (840)
T KOG3417|consen 342 ELTSLLDNVQNYRRYLQSCNISPCIPILGVYLLDSLVKLNEALPTKLLRIGERELSFSKLKVLLEIIS 409 (840)
T ss_pred HHhhcchHHHHHHHHhhhcccCccccccccccHHHHHhhhhcCCccccccccccccchhhhHHHHHHH
Confidence 4566778888888877554444999999999999 9999999999996 33 899999999999985
No 9
>KOG3541|consensus
Probab=96.38 E-value=0.0023 Score=49.54 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=39.3
Q ss_pred CCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhh
Q psy15696 23 VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVL 66 (68)
Q Consensus 23 ~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi 66 (68)
.....|||+..||+|+-+|..+.+.++++|.|||.|...+..=+
T Consensus 374 ~ekaviPff~l~Lkdl~~i~~~h~~~l~Nghinf~k~~~i~~ql 417 (477)
T KOG3541|consen 374 PEKAVIPFFTLFLKDLLDISARHRLFLPNGHINFLKFVGIEGQL 417 (477)
T ss_pred CccccccchhhhHHHHHHHHhhhcccCCCchhHHHHHHhHHhhh
Confidence 45668999999999999999999999999999999998776544
No 10
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.96 E-value=14 Score=29.81 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=7.3
Q ss_pred CCCCCccch
Q psy15696 23 VSNGTIPYL 31 (68)
Q Consensus 23 ~~~pciPfl 31 (68)
-+.||||||
T Consensus 595 ~~~pcipff 603 (617)
T PF15070_consen 595 GSNPCIPFF 603 (617)
T ss_pred CCCCcccce
Confidence 346999998
Done!