Query psy15696
Match_columns 68
No_of_seqs 103 out of 401
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 19:07:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ije_S Guanine nucleotide-rele 99.7 2.8E-19 9.7E-24 123.2 -0.4 61 6-67 133-193 (240)
2 4f7z_A RAP guanine nucleotide 99.6 2E-17 7E-22 129.1 -0.2 60 6-67 888-947 (999)
3 2ii0_A SOS-1, SON of sevenless 99.6 1.1E-16 3.6E-21 119.4 -1.1 58 9-67 350-410 (490)
4 3cf6_E RAP guanine nucleotide 99.5 3E-16 1E-20 121.1 -1.8 60 6-67 583-642 (694)
5 3qxl_A RAS-specific guanine nu 99.5 3.7E-16 1.3E-20 109.9 -1.6 62 5-67 159-220 (271)
6 3ksy_A SOS-1, SON of sevenless 99.5 1.7E-15 6E-20 120.9 -1.1 58 9-67 909-969 (1049)
7 3tbg_A Cytochrome P450 2D6; mo 17.4 57 0.0019 22.1 1.6 13 23-35 13-25 (479)
8 3kkj_A Amine oxidase, flavin-c 13.9 63 0.0022 18.6 1.0 9 2-10 25-33 (336)
9 4gcm_A TRXR, thioredoxin reduc 12.0 87 0.003 20.2 1.3 11 1-11 5-15 (312)
10 1puo_A Major allergen I polype 11.6 49 0.0017 22.0 -0.0 15 25-39 5-19 (170)
No 1
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=99.72 E-value=2.8e-19 Score=123.17 Aligned_cols=61 Identities=30% Similarity=0.551 Sum_probs=53.4
Q ss_pred eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
+..++|++..|... .++.+|||||+|+||+||+|+++||||++++|+|||+|+++++++|+
T Consensus 133 ~~~~~n~~~yR~~l-~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~lINf~K~~~~~~ii~ 193 (240)
T 2ije_S 133 VSSDGRFKNLRESL-RNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMRMISHIIR 193 (240)
T ss_dssp TCCHHHHHHHHHHH-HTCCSSCBCCHHHHHHHHHHHHHHSCSBCTTSCBCHHHHHHHHHHHH
T ss_pred HCccchHHHHHHHH-HhcCCCccCccchHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHHH
Confidence 44567888777654 45679999999999999999999999999889999999999999985
No 2
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.63 E-value=2e-17 Score=129.14 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=52.2
Q ss_pred eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
+....|++..|... .++.+|||||+|+||+||||+++||||+++ ++|||+|+++++++|+
T Consensus 888 ~~~~~n~~~yr~~l-~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~-~linf~k~~~~~~~i~ 947 (999)
T 4f7z_A 888 MDPSRNHRAYRLTA-AKLEPPLIPFMPLLIKDMTFTHEGNKTFID-NLVNFEKMRMIANTAR 947 (999)
T ss_dssp TCCHHHHHHHHHHH-HTCCSSCBCCHHHHHHHHHHHHHTSCSBSS-SSEEHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHH-HhCCCCeeceehHHHHHHHHHhccCCCCCC-CcCcHHHHHHHHHHHH
Confidence 44566888777544 557899999999999999999999999997 7999999999999985
No 3
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=99.57 E-value=1.1e-16 Score=119.38 Aligned_cols=58 Identities=24% Similarity=0.448 Sum_probs=49.3
Q ss_pred cCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCC---ccchhhhHhHHhhhc
Q psy15696 9 GSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDG---LINFDKKRKEFEVLA 67 (68)
Q Consensus 9 ~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~---lINf~K~~k~~~vi~ 67 (68)
.+||+..|... .+..+|||||+|+||+||+|+++||||+++++ +|||+|++++++||+
T Consensus 350 ~~n~~~yR~~l-~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~ 410 (490)
T 2ii0_A 350 EDHYKKYLAKL-RSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 410 (490)
T ss_dssp HHHHHHHHHHH-HTCCSSCBCCCHHHHHHHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hccCCCcccCcHHHHHHHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHH
Confidence 45776665544 34679999999999999999999999999754 999999999999985
No 4
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.53 E-value=3e-16 Score=121.05 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=51.8
Q ss_pred eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
+..+.|++..|... .++.+|||||+|+||+||+|+++||||+++ ++|||+|+++++++++
T Consensus 583 ~~~~~N~~~yR~~l-~~~~~p~IPflg~~L~DL~fi~egn~~~~~-~lINf~K~r~i~~ii~ 642 (694)
T 3cf6_E 583 MDPSRNHRAYRLTA-AKLEPPLIPFMPLLIKDMTFTHEGNKTFID-NLVNFEKMRMIANTAR 642 (694)
T ss_dssp TCCHHHHHHHHHHH-HHSCSSCBCCHHHHHHHHHHHHHHSCSEET-TEEEHHHHHHHHHHHH
T ss_pred hCccccHHHHHHHH-HhcCCCCcccHHHHHHHHHHHHcCCCchhc-cCcCHHHHHHHHHHHH
Confidence 44567888777654 446799999999999999999999999996 8999999999999985
No 5
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=99.53 E-value=3.7e-16 Score=109.86 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=48.9
Q ss_pred eeeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696 5 VIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA 67 (68)
Q Consensus 5 ~~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~ 67 (68)
++..++|++..|........+|||||+|+||+||+|+++||||+ .+.++||.|++++.+|++
T Consensus 159 l~~~~~N~~~yR~~l~~~~~~p~IPflg~~L~DL~fi~~g~p~~-~~~l~n~~k~~~~~~i~~ 220 (271)
T 3qxl_A 159 LMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPAS-GSIMENEQRSNQMNNILR 220 (271)
T ss_dssp HTCCHHHHHHHHHHHHTTTTSCCBCCHHHHHHHHHHHHHHSCSS-SCHHHHHHHHHHHHHHHH
T ss_pred HcCcchhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhcCCCc-ccccccHHHHHHHHHHHH
Confidence 34567788888876544334899999999999999999999998 444567888888877764
No 6
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.48 E-value=1.7e-15 Score=120.92 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=50.0
Q ss_pred cCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCC---CccchhhhHhHHhhhc
Q psy15696 9 GSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPD---GLINFDKKRKEFEVLA 67 (68)
Q Consensus 9 ~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~---~lINf~K~~k~~~vi~ 67 (68)
.+|++..|... .++.+|||||+|+||+||+|+++||||++++ ++|||+|++++++||+
T Consensus 909 ~~n~~~yR~~l-~~~~~p~IPflg~~L~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii~ 969 (1049)
T 3ksy_A 909 EDHYKKYLAKL-RSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 969 (1049)
T ss_dssp HHHHHHHHHHH-TTCCSSCCCCTHHHHHHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hhCCCCccceeHHHHHHHHHHHccCCccccCCCCCeEcHHHHHHHHHHHH
Confidence 46777666554 4567999999999999999999999999963 7999999999999985
No 7
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=17.42 E-value=57 Score=22.08 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=9.1
Q ss_pred CCCCCccchhchh
Q psy15696 23 VSNGTIPYLGTFL 35 (68)
Q Consensus 23 ~~~pciPflG~~L 35 (68)
+.|+.+|++|..+
T Consensus 13 PGP~~lP~iGn~~ 25 (479)
T 3tbg_A 13 PGPLPLPGLGNLL 25 (479)
T ss_dssp CCSCCBTTTBTGG
T ss_pred CCCCCcCcccchH
Confidence 4456799999654
No 8
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=13.87 E-value=63 Score=18.62 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=4.9
Q ss_pred ceeeeeecC
Q psy15696 2 NYDVIAYGS 10 (68)
Q Consensus 2 ~~~~~~~~~ 10 (68)
+++|.++|-
T Consensus 25 G~~V~v~Ek 33 (336)
T 3kkj_A 25 GHQVHLFDK 33 (336)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEEEC
Confidence 455666653
No 9
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=11.99 E-value=87 Score=20.16 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=7.1
Q ss_pred CceeeeeecCc
Q psy15696 1 MNYDVIAYGSV 11 (68)
Q Consensus 1 ~~~~~~~~~~n 11 (68)
|+|||++-|.=
T Consensus 5 ~~yDvvIIG~G 15 (312)
T 4gcm_A 5 IDFDIAIIGAG 15 (312)
T ss_dssp CSEEEEEECCS
T ss_pred CCCCEEEECCC
Confidence 46777776643
No 10
>1puo_A Major allergen I polypeptide, fused chain 2, chain 1; CAT allergen, uteroglobin, secretoglobin; 1.85A {Felis catus} SCOP: a.101.1.1 a.101.1.1
Probab=11.59 E-value=49 Score=21.98 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=12.1
Q ss_pred CCCccchhchhchhh
Q psy15696 25 NGTIPYLGTFLTDLT 39 (68)
Q Consensus 25 ~pciPflG~~L~DLt 39 (68)
..|+||+|.|..-+.
T Consensus 5 EAC~pFf~~Y~~v~s 19 (170)
T 1puo_A 5 ETCPIFYDVFFAVAN 19 (170)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh
Confidence 489999999987553
Done!