RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15696
         (68 letters)



>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like
           small GTPases. Small GTP-binding proteins of the Ras
           superfamily function as molecular switches in
           fundamental events such as signal transduction,
           cytoskeleton dynamics and intracellular trafficking.
           Guanine-nucleotide-exchange factors (GEFs) positively
           regulate these GTP-binding proteins in response to a
           variety of signals. GEFs catalyze the dissociation of
           GDP from the inactive GTP-binding proteins. GTP can then
           bind and induce structural changes that allow
           interaction with effectors.
          Length = 237

 Score = 68.0 bits (167), Expect = 6e-16
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             +   +P+LG +L DLT +    PD L   L+NF+K+RK  E+L +
Sbjct: 151 GPNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEILRE 197


>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange
           factor for Ras-like small GTPases.
          Length = 185

 Score = 63.7 bits (156), Expect = 2e-14
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRK 61
           L   +   IP+LG +L DLT I+   PD L +GLINF+K+RK
Sbjct: 144 LKKANPPCIPFLGLYLKDLTFIEEGNPDFLDNGLINFEKRRK 185


>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like
           small GTPases. 
          Length = 242

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             IP+LG  L DLT ID   PD L +GL+NF+K+R+  E+L +
Sbjct: 154 PCIPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRQIAEILRE 196


>gnl|CDD|205692 pfam13514, AAA_27, AAA domain.  This domain is found in a number of
            double-strand DNA break proteins. This domain contains a
            P-loop motif.
          Length = 1118

 Score = 26.7 bits (59), Expect = 0.80
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 42   DTAIPDTLPDGLINFDKKRKE--FEVLA 67
            +  +P  + D  INFD +R     EVL 
Sbjct: 1057 NEPLPFIVDDIFINFDDERTRATLEVLR 1084


>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
          Length = 451

 Score = 25.6 bits (57), Expect = 1.9
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 7   AYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINF-------DKK 59
            YGS+ R ++   LP     T    GT    L  +  A+ + LP G I+        DK 
Sbjct: 190 KYGSLLRGMR-KALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKS 248

Query: 60  RKEFEVL 66
              +E++
Sbjct: 249 GDGYEIV 255


>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
          Length = 754

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 43  TAIPDTLPDGLINFDKKRKEFEVL 66
           + +P+ LP+ L            L
Sbjct: 275 SCLPENLPEELRYLSVYDNSIRTL 298


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,599,380
Number of extensions: 264972
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)