BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15697
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 153/320 (47%), Gaps = 32/320 (10%)
Query: 1 MTPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHII 60
+ F F F + +++E + +L T+R+ A+S ++L+ L + GS +
Sbjct: 36 LNTFGFPREF------IYYLVELLKDSLLRRTQRSRAISPDVQILAALGFYTSGSFQSKM 89
Query: 61 GATHGPSKSSICRSIHEVVPVIVDTF-----FQRMVKWPEENLNDIPMTFLRKGGFPNVA 115
G G S++S+ R + V +++ F R E F R G PNV
Sbjct: 90 GDAIGISQASMSRCVSNVTKALIEKAPEFIGFTR----DEATKQQFKDEFYRIAGIPNVT 145
Query: 116 GCVDGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRN 175
G VD + I APN + +VN+ G H++N +C + +WPGS+ D V +
Sbjct: 146 GVVDCAHIAIKAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQ 205
Query: 176 SMVYRKF-----DEEGWRPFPDAVILGDSAYPLKEWLIPPRTRNPDAAADQRFLRCHKRT 230
S V + F D+EGW +LGD+ YPLK+WL+ P ++P++ AD R+ H T
Sbjct: 206 SNVAKLFEEQENDDEGW-------LLGDNRYPLKKWLMTP-VQSPESPADYRYNLAHTTT 257
Query: 231 RRLIENSFGILKEKFPCLN----YMRLSPQFAGMVVLASTTLHNIALTIDRDNENQNVEI 286
+++ +F ++ +F CL+ Y++ SP+ ++ A LHNI+L D
Sbjct: 258 HEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNISLQSGLDAWTFERTE 317
Query: 287 HDDEAEDDGEEEAVDDPDEI 306
D++ +D + DDP+ +
Sbjct: 318 ATDQSGEDIDPSDTDDPEAL 337
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 17/279 (6%)
Query: 1 MTPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHII 60
M+ + F F + +++E + L+ PT+R+ A+S + +VL+ L + GS +
Sbjct: 36 MSMYGFPRQF------IYYLVELLGANLSRPTQRSRAISPETQVLAALGFYTSGSFQTRM 89
Query: 61 GATHGPSKSSICRSIHEVVPVIVDTFFQRMVKWP--EENLNDIPMTFLRKGGFPNVAGCV 118
G G S++S+ R + V +V+ Q +++P E ++ + F G P V G V
Sbjct: 90 GDAIGISQASMSRCVANVTEALVERASQ-FIRFPADEASIQALKDEFYGLAGMPGVMGVV 148
Query: 119 DGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRNSMV 178
D V I APN + +VNR G H+LN + +C V NWPGS+ D V++ S +
Sbjct: 149 DCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSL 208
Query: 179 YRKFDEEGWRPFPDAVILGDSAYPLKEWLIPPRTRNPDAAADQRFLRCHKRTRRLIENSF 238
+F E G D+ +LGDS++ L+ WL+ P P+ A+ R+ H T +IE +F
Sbjct: 209 SSQF-EAGMH--KDSWLLGDSSFFLRTWLMTP-LHIPETPAEYRYNMAHSATHSVIEKTF 264
Query: 239 GILKEKFPCLN----YMRLSPQFAGMVVLASTTLHNIAL 273
L +F CL+ ++ SP+ + ++LA LHNI+L
Sbjct: 265 RTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISL 303
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 157/318 (49%), Gaps = 20/318 (6%)
Query: 1 MTPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHII 60
M+ + F F + F++E + +L+ PT+R+ A+S + ++L+ L + GS +
Sbjct: 36 MSMYGFPRQF------IYFLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRM 89
Query: 61 GATHGPSKSSICRSIHEVVPVIVDTFFQRMVKWP--EENLNDIPMTFLRKGGFPNVAGCV 118
G G S++S+ R + V +V+ Q + +P E + + F G P V G
Sbjct: 90 GDAIGISQASMSRCVANVTEALVERASQ-FIHFPVDEAAVQSLKDEFYGLAGMPGVIGVA 148
Query: 119 DGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRNSMV 178
D V I APN + +VNR G H+LN + +C V +WPGS+ D V++ S +
Sbjct: 149 DCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSL 208
Query: 179 YRKFDEEGWRPFPDAVILGDSAYPLKEWLIPPRTRNPDAAADQRFLRCHKRTRRLIENSF 238
+F E P D+ +LGDS++ L+ WL+ P P+ AA+ R+ R H T +IE +
Sbjct: 209 TSQF--ETGMP-KDSWLLGDSSFFLRSWLLTPLP-IPETAAEYRYNRAHSATHSVIERTL 264
Query: 239 GILKEKFPCLN----YMRLSPQFAGMVVLASTTLHNIALTIDRDNENQNVEIHDD---EA 291
L +F CL+ ++ SP+ ++LA LHNI+L D + V D E
Sbjct: 265 QTLCCRFRCLDGSKGALQYSPEKCSHIILACCVLHNISLDHGMDVWSSPVPGPIDQPPEG 324
Query: 292 EDDGEEEAVDDPDEIDEE 309
ED+ E + D I +E
Sbjct: 325 EDEHMESLDLEADRIRQE 342
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 145/283 (51%), Gaps = 25/283 (8%)
Query: 1 MTPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHII 60
M+ + F F + +++E + +L+ PT+R+ A+S + ++L+ L + GS +
Sbjct: 36 MSMYGFPRQF------IYYLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRM 89
Query: 61 GATHGPSKSSICRSIHEVVPVIVDTFFQRMVKWP--EENLNDIPMTFLRKGGFPNVAGCV 118
G G S++S+ R + V +V+ Q + +P E ++ + F G P V G V
Sbjct: 90 GDAIGISQASMSRCVANVTEALVERASQ-FIHFPADEASVQALKDEFYGLAGIPGVIGVV 148
Query: 119 DGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRNSMV 178
D V I APN + +VNR G H+LN + +C V +WPGS+ D V++ S +
Sbjct: 149 DCMHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSL 208
Query: 179 YRKFD----EEGWRPFPDAVILGDSAYPLKEWLIPPRTRNPDAAADQRFLRCHKRTRRLI 234
+F+ +E W +LGDS++ L+ WL+ P P+ A+ R+ H T +I
Sbjct: 209 SSQFEAGMHKESW-------LLGDSSFFLRTWLMTP-LHIPETPAEYRYNMAHSATHSVI 260
Query: 235 ENSFGILKEKFPCLN----YMRLSPQFAGMVVLASTTLHNIAL 273
E +F L +F CL+ ++ SP+ + ++LA LHNI+L
Sbjct: 261 EKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISL 303
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 159/318 (50%), Gaps = 20/318 (6%)
Query: 1 MTPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHII 60
M+ + F F + +++E + +L+ PT+R+ A+S + ++L+ L + GS +
Sbjct: 36 MSMYGFPRQF------IYYLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRM 89
Query: 61 GATHGPSKSSICRSIHEVVPVIVDTFFQRMVKWP--EENLNDIPMTFLRKGGFPNVAGCV 118
G G S++S+ R + V +V+ Q + +P E + + F G P V G V
Sbjct: 90 GDAIGISQASMSRCVANVTEALVERASQ-FIHFPADEAAIQSLKDEFYGLAGMPGVIGAV 148
Query: 119 DGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRNSMV 178
D V I APN + +VNR G H+LN + +C V +WPGS+ D V++ S +
Sbjct: 149 DCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSL 208
Query: 179 YRKFDEEGWRPFPDAVILGDSAYPLKEWLIPPRTRNPDAAADQRFLRCHKRTRRLIENSF 238
+F E P D+ +LGDS++ L WL+ P P+ A+ R+ R H T +IE +
Sbjct: 209 SSQF--ETGMP-KDSWLLGDSSFFLHTWLLTP-LHIPETPAEYRYNRAHSATHSVIEKTL 264
Query: 239 GILKEKFPCLN----YMRLSPQFAGMVVLASTTLHNIALTIDRDNENQNVE--IHDDEAE 292
L +F CL+ ++ SP+ + ++LA LHNI+L D + V I
Sbjct: 265 RTLCCRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGMDVWSSPVTGPIEQPPEG 324
Query: 293 DDGEEEAVD-DPDEIDEE 309
+D + E++D + D I +E
Sbjct: 325 EDEQMESLDLEADRIRQE 342
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 25/288 (8%)
Query: 1 MTPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHII 60
+T + F F ++++++ + +L+ PT R+ A+S + ++++ L + GS +
Sbjct: 36 VTTYGFPRPF------IDYLVDLLGASLSRPTHRSRAISPETQIMAALGFYTSGSFQTRM 89
Query: 61 GATHGPSKSSICRSIHEVVPVIVDTFFQRMVKWP--EENLNDIPMTFLRKGGFPNVAGCV 118
G T G S++S+ R + V +V+ Q + +P E ++ + F G P V G V
Sbjct: 90 GDTIGISQASMSRCVTNVTEALVERASQ-FISFPRDERSVQGLKDEFYNLAGVPGVLGVV 148
Query: 119 DGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRNS-- 176
D T V I APN + +VN G H+LN + +C + GS+ D V+ S
Sbjct: 149 DCTQVNIKAPNSEDLSYVNSRGLHSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSEL 208
Query: 177 --MVYRKFDEEGWRPFPDAVILGDSAYPLKEWLIPPRTRNPDAAADQRFLRCHKRTRRLI 234
+ K ++GW +L D+A+ L+ WL+ P + P++ +D R+ H T ++
Sbjct: 209 SGLFETKMHKQGW-------LLADNAFILRPWLMTP-VQIPESPSDYRYNMAHTATHSVM 260
Query: 235 ENSFGILKEKFPCLN----YMRLSPQFAGMVVLASTTLHNIALTIDRD 278
E + L+ +F CL+ ++ SP+ + +VLA LHNIAL D D
Sbjct: 261 ERTQRSLRLRFRCLDGSRATLQYSPEKSAQIVLACCILHNIALQHDLD 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,020,617
Number of Sequences: 539616
Number of extensions: 6035781
Number of successful extensions: 39241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 33112
Number of HSP's gapped (non-prelim): 4229
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)