Query psy15697
Match_columns 332
No_of_seqs 232 out of 1517
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 19:08:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 96.4 0.0019 6.4E-08 40.6 2.5 43 35-78 3-45 (51)
2 2w7n_A TRFB transcriptional re 96.1 0.0058 2E-07 45.1 4.1 61 10-83 3-63 (101)
3 2glo_A Brinker CG9653-PA; prot 96.0 0.0047 1.6E-07 40.8 3.1 46 35-81 3-52 (59)
4 1wy3_A Villin; structural prot 95.5 0.0079 2.7E-07 35.1 2.2 20 1-20 1-20 (35)
5 1und_A Advillin, P92; actin bi 95.2 0.011 3.7E-07 35.0 2.2 20 1-20 3-22 (37)
6 1jko_C HIN recombinase, DNA-in 95.0 0.01 3.5E-07 37.4 2.0 40 37-77 5-44 (52)
7 2o8x_A Probable RNA polymerase 94.7 0.044 1.5E-06 36.9 4.8 47 37-84 15-61 (70)
8 2jn6_A Protein CGL2762, transp 94.6 0.019 6.4E-07 41.9 2.8 43 36-78 4-47 (97)
9 1tty_A Sigma-A, RNA polymerase 94.6 0.031 1E-06 40.0 3.8 48 37-84 18-68 (87)
10 2p7v_B Sigma-70, RNA polymeras 94.6 0.022 7.5E-07 38.6 2.9 48 37-84 5-55 (68)
11 1ku3_A Sigma factor SIGA; heli 94.5 0.035 1.2E-06 38.1 3.8 48 36-83 9-59 (73)
12 1jhg_A Trp operon repressor; c 93.9 0.014 4.7E-07 43.1 0.8 45 38-83 36-86 (101)
13 3hug_A RNA polymerase sigma fa 93.4 0.078 2.7E-06 38.1 4.1 47 37-84 37-83 (92)
14 3t72_q RNA polymerase sigma fa 93.3 0.067 2.3E-06 39.3 3.5 48 37-84 19-69 (99)
15 2elh_A CG11849-PA, LD40883P; s 93.0 0.059 2E-06 38.5 2.8 45 36-81 21-65 (87)
16 2jrt_A Uncharacterized protein 92.7 0.097 3.3E-06 38.1 3.6 45 34-78 29-73 (95)
17 1fse_A GERE; helix-turn-helix 92.6 0.098 3.4E-06 35.6 3.5 47 36-84 10-56 (74)
18 2x48_A CAG38821; archeal virus 92.2 0.062 2.1E-06 34.5 1.8 27 51-77 28-54 (55)
19 1qzp_A Dematin; villin headpie 92.1 0.062 2.1E-06 36.4 1.8 20 1-20 34-53 (68)
20 1u78_A TC3 transposase, transp 92.0 0.085 2.9E-06 40.8 2.8 43 35-78 4-46 (141)
21 1u78_A TC3 transposase, transp 91.9 0.53 1.8E-05 36.1 7.4 77 2-78 24-103 (141)
22 2jpc_A SSRB; DNA binding prote 91.8 0.092 3.2E-06 34.3 2.4 33 51-83 10-42 (61)
23 1je8_A Nitrate/nitrite respons 91.7 0.11 3.6E-06 36.6 2.8 46 36-83 20-65 (82)
24 1yu8_X Villin; alpha helix, 3- 91.7 0.068 2.3E-06 36.0 1.6 20 1-20 33-52 (67)
25 1p4w_A RCSB; solution structur 91.5 0.27 9.4E-06 35.9 4.9 61 17-83 18-78 (99)
26 1hlv_A CENP-B, major centromer 91.2 0.14 4.7E-06 39.3 3.2 49 35-83 5-54 (131)
27 3c57_A Two component transcrip 91.2 0.15 5.2E-06 36.9 3.3 47 36-84 26-72 (95)
28 1s7o_A Hypothetical UPF0122 pr 91.0 0.19 6.5E-06 37.8 3.7 46 38-84 23-68 (113)
29 2k6m_S Supervillin; SVHP, HP, 90.9 0.07 2.4E-06 36.0 1.1 20 1-20 33-52 (67)
30 1pdn_C Protein (PRD paired); p 90.8 0.14 4.8E-06 38.6 2.9 44 36-80 16-59 (128)
31 2rnj_A Response regulator prot 90.6 0.15 5.1E-06 36.6 2.6 46 36-83 28-73 (91)
32 1k78_A Paired box protein PAX5 90.5 0.15 5.3E-06 40.0 2.9 44 36-80 31-74 (149)
33 1xsv_A Hypothetical UPF0122 pr 90.4 0.26 8.8E-06 37.0 4.0 46 38-84 26-71 (113)
34 2rn7_A IS629 ORFA; helix, all 90.2 0.08 2.7E-06 39.3 1.0 43 36-78 5-54 (108)
35 1or7_A Sigma-24, RNA polymeras 90.1 0.28 9.5E-06 40.0 4.3 46 38-84 141-186 (194)
36 1x3u_A Transcriptional regulat 90.1 0.16 5.5E-06 35.0 2.4 44 38-83 17-60 (79)
37 1rp3_A RNA polymerase sigma fa 89.6 0.34 1.2E-05 40.8 4.6 48 36-84 186-233 (239)
38 1ujs_A Actin-binding LIM prote 89.4 0.1 3.5E-06 37.1 0.9 21 1-21 48-68 (88)
39 2q1z_A RPOE, ECF SIGE; ECF sig 89.1 0.52 1.8E-05 38.0 5.2 46 38-84 136-181 (184)
40 3ulq_B Transcriptional regulat 88.7 0.29 1E-05 35.1 3.0 47 35-83 27-73 (90)
41 2k27_A Paired box protein PAX- 88.0 0.18 6.3E-06 40.1 1.7 43 35-78 23-65 (159)
42 1j1v_A Chromosomal replication 87.6 0.31 1.1E-05 35.3 2.6 52 33-84 25-77 (94)
43 1iuf_A Centromere ABP1 protein 87.4 0.26 8.8E-06 38.7 2.1 47 34-80 8-62 (144)
44 2lfw_A PHYR sigma-like domain; 86.5 0.5 1.7E-05 37.3 3.5 48 36-84 92-139 (157)
45 3mzy_A RNA polymerase sigma-H 85.5 0.66 2.3E-05 36.3 3.7 46 37-84 109-154 (164)
46 3frw_A Putative Trp repressor 85.3 0.28 9.6E-06 36.2 1.2 30 48-77 52-81 (107)
47 3pvv_A Chromosomal replication 85.0 0.56 1.9E-05 34.4 2.8 52 33-84 29-80 (101)
48 3kor_A Possible Trp repressor; 84.3 0.28 9.6E-06 37.0 0.8 33 45-77 66-98 (119)
49 1zx4_A P1 PARB, plasmid partit 83.7 0.61 2.1E-05 38.5 2.7 40 38-77 8-47 (192)
50 2heo_A Z-DNA binding protein 1 82.6 0.65 2.2E-05 31.1 2.1 40 41-80 12-51 (67)
51 2l1p_A DNA-binding protein SAT 82.3 0.61 2.1E-05 32.5 1.9 33 45-77 23-55 (83)
52 1uxc_A FRUR (1-57), fructose r 82.1 0.32 1.1E-05 32.5 0.4 21 56-76 2-22 (65)
53 1r1u_A CZRA, repressor protein 81.6 1.2 4.1E-05 32.6 3.5 58 12-80 8-65 (106)
54 1oyi_A Double-stranded RNA-bin 81.6 0.57 2E-05 32.9 1.5 40 39-80 17-56 (82)
55 3ech_A MEXR, multidrug resista 81.5 1.5 5.1E-05 33.6 4.2 42 38-80 35-77 (142)
56 1zyb_A Transcription regulator 81.3 1 3.4E-05 37.8 3.3 77 4-80 125-212 (232)
57 2d1h_A ST1889, 109AA long hypo 81.1 0.62 2.1E-05 33.8 1.7 29 52-80 34-62 (109)
58 1l0o_C Sigma factor; bergerat 80.8 0.32 1.1E-05 40.9 0.0 45 36-81 197-241 (243)
59 3nrv_A Putative transcriptiona 80.7 1.5 5.2E-05 33.7 4.0 43 37-80 37-80 (148)
60 4aik_A Transcriptional regulat 80.3 1.8 6.3E-05 33.8 4.4 43 38-80 29-72 (151)
61 1qgp_A Protein (double strande 80.2 0.85 2.9E-05 31.5 2.1 40 41-80 16-57 (77)
62 2qvo_A Uncharacterized protein 79.4 0.81 2.8E-05 32.8 1.8 26 55-80 31-56 (95)
63 2lkp_A Transcriptional regulat 78.7 1.5 5.2E-05 32.6 3.3 28 53-80 44-71 (119)
64 3g3z_A NMB1585, transcriptiona 78.6 1.8 6.3E-05 33.1 3.9 42 38-80 29-71 (145)
65 3mky_B Protein SOPB; partition 78.3 1.1 3.7E-05 36.7 2.4 43 35-77 21-65 (189)
66 3r0a_A Putative transcriptiona 78.1 0.86 2.9E-05 34.5 1.7 39 42-80 29-68 (123)
67 2jt1_A PEFI protein; solution 78.0 1.2 4.2E-05 30.8 2.3 27 53-79 23-49 (77)
68 2cw1_A SN4M; lambda CRO fold, 77.9 0.69 2.3E-05 30.9 0.9 21 55-75 14-34 (65)
69 2gxg_A 146AA long hypothetical 77.6 2.8 9.6E-05 31.9 4.6 41 38-80 35-76 (146)
70 3k0l_A Repressor protein; heli 77.3 2.9 0.0001 32.7 4.8 42 38-80 44-86 (162)
71 2a6h_F RNA polymerase sigma fa 77.3 2.6 8.8E-05 39.3 5.0 46 38-83 361-409 (423)
72 1y0u_A Arsenical resistance op 77.3 0.94 3.2E-05 32.5 1.6 29 52-80 41-69 (96)
73 3tgn_A ADC operon repressor AD 76.8 5.4 0.00019 30.3 6.1 43 36-80 34-77 (146)
74 3bja_A Transcriptional regulat 76.7 2 7E-05 32.4 3.6 42 38-80 31-73 (139)
75 3eco_A MEPR; mutlidrug efflux 76.3 2.2 7.6E-05 32.3 3.7 43 38-80 29-73 (139)
76 2fbh_A Transcriptional regulat 76.1 2.6 8.9E-05 32.1 4.1 40 41-80 39-78 (146)
77 1qbj_A Protein (double-strande 76.1 1.7 5.9E-05 30.3 2.7 39 41-79 12-52 (81)
78 2oa4_A SIR5; structure, struct 76.0 1.4 5E-05 32.1 2.3 42 38-79 34-75 (101)
79 2l8n_A Transcriptional repress 75.8 0.45 1.6E-05 32.0 -0.4 22 55-76 10-31 (67)
80 2pex_A Transcriptional regulat 75.8 2.4 8.1E-05 32.8 3.8 43 37-80 44-87 (153)
81 1l9z_H Sigma factor SIGA; heli 75.6 1.8 6.2E-05 40.5 3.5 47 37-83 375-424 (438)
82 2hr3_A Probable transcriptiona 75.5 2.1 7E-05 32.8 3.3 44 37-80 32-76 (147)
83 1ku9_A Hypothetical protein MJ 75.3 1.1 3.8E-05 34.4 1.7 40 40-80 27-67 (152)
84 3bro_A Transcriptional regulat 75.3 3.5 0.00012 31.1 4.6 43 38-80 32-76 (141)
85 4dyq_A Gene 1 protein; GP1, oc 75.1 1.1 3.9E-05 34.8 1.6 44 33-77 8-52 (140)
86 2l0k_A Stage III sporulation p 75.0 1.1 3.9E-05 32.2 1.5 26 53-78 19-44 (93)
87 1tbx_A ORF F-93, hypothetical 74.7 2.7 9.2E-05 30.0 3.6 39 41-80 10-52 (99)
88 2htj_A P fimbrial regulatory p 74.6 2.2 7.4E-05 29.4 2.9 27 54-80 14-40 (81)
89 3clo_A Transcriptional regulat 74.6 1.9 6.3E-05 37.1 3.1 47 36-84 196-242 (258)
90 2x4h_A Hypothetical protein SS 74.4 1.5 5.1E-05 33.6 2.2 39 42-80 16-57 (139)
91 2pij_A Prophage PFL 6 CRO; tra 74.3 1 3.5E-05 29.7 1.0 25 51-76 11-35 (67)
92 2pg4_A Uncharacterized protein 73.8 1.6 5.6E-05 31.0 2.1 27 54-80 30-57 (95)
93 2cob_A LCOR protein; MLR2, KIA 73.3 1.8 6.2E-05 29.2 2.0 39 39-77 14-53 (70)
94 3hsr_A HTH-type transcriptiona 73.3 1.6 5.4E-05 33.4 2.1 28 53-80 49-76 (140)
95 3deu_A Transcriptional regulat 73.3 3.4 0.00011 32.7 4.1 44 37-80 50-94 (166)
96 2dk5_A DNA-directed RNA polyme 73.1 2.5 8.5E-05 30.2 2.9 47 34-80 14-62 (91)
97 3dv8_A Transcriptional regulat 73.1 1.7 5.9E-05 35.6 2.4 43 38-80 146-195 (220)
98 3oop_A LIN2960 protein; protei 72.7 2.4 8.3E-05 32.3 3.1 43 37-80 34-77 (143)
99 4hbl_A Transcriptional regulat 72.7 2.3 7.8E-05 32.9 2.9 42 38-80 39-81 (149)
100 3fm5_A Transcriptional regulat 72.6 1.9 6.6E-05 33.2 2.5 43 38-80 37-80 (150)
101 1l3l_A Transcriptional activat 72.6 2.9 9.9E-05 35.2 3.8 47 35-83 171-217 (234)
102 2kko_A Possible transcriptiona 72.0 1.6 5.5E-05 32.1 1.8 37 43-81 29-65 (108)
103 1r71_A Transcriptional repress 72.0 2.2 7.4E-05 34.7 2.7 42 35-76 33-74 (178)
104 3iyd_F RNA polymerase sigma fa 71.8 2.7 9.4E-05 41.1 3.9 48 37-84 550-600 (613)
105 2q0o_A Probable transcriptiona 71.5 2.6 8.8E-05 35.6 3.2 47 35-83 173-219 (236)
106 2rdp_A Putative transcriptiona 71.4 4.8 0.00016 30.8 4.6 43 37-80 39-82 (150)
107 2bv6_A MGRA, HTH-type transcri 71.2 2.1 7.1E-05 32.6 2.3 28 53-80 50-77 (142)
108 1sfx_A Conserved hypothetical 71.0 2.7 9.1E-05 30.2 2.8 38 42-80 23-60 (109)
109 3bpv_A Transcriptional regulat 70.9 4.9 0.00017 30.2 4.4 42 38-80 27-69 (138)
110 4b8x_A SCO5413, possible MARR- 70.8 3.6 0.00012 31.8 3.7 43 38-80 33-77 (147)
111 3m8j_A FOCB protein; all-alpha 70.1 14 0.00049 27.2 6.4 56 11-78 29-84 (111)
112 1pdn_C Protein (PRD paired); p 70.0 9.2 0.00031 28.1 5.8 75 2-77 35-126 (128)
113 2ao9_A Phage protein; structur 69.5 2.7 9.3E-05 33.3 2.6 42 36-77 22-71 (155)
114 3cuo_A Uncharacterized HTH-typ 69.4 1.7 6E-05 30.8 1.4 27 54-80 38-64 (99)
115 3ryp_A Catabolite gene activat 69.3 2.4 8.3E-05 34.4 2.5 43 38-80 138-193 (210)
116 1on2_A Transcriptional regulat 69.3 2.3 7.9E-05 32.6 2.2 28 53-80 21-48 (142)
117 1k78_A Paired box protein PAX5 69.1 12 0.00041 28.7 6.5 77 3-80 51-144 (149)
118 2jsc_A Transcriptional regulat 69.1 3 0.0001 31.1 2.8 29 52-80 32-60 (118)
119 2oqg_A Possible transcriptiona 69.0 2.3 7.7E-05 31.2 2.0 37 42-80 24-60 (114)
120 2frh_A SARA, staphylococcal ac 68.9 2.8 9.7E-05 31.5 2.6 43 38-80 35-79 (127)
121 1r1t_A Transcriptional repress 68.9 3.9 0.00013 30.7 3.4 31 50-80 54-85 (122)
122 3szt_A QCSR, quorum-sensing co 68.8 2.8 9.4E-05 35.5 2.8 46 35-82 173-218 (237)
123 1zs4_A Regulatory protein CII; 68.3 1.9 6.6E-05 30.2 1.4 34 45-79 16-49 (83)
124 3u2r_A Regulatory protein MARR 68.2 4.6 0.00016 31.8 3.9 43 38-80 44-88 (168)
125 1q1h_A TFE, transcription fact 68.2 3.5 0.00012 30.1 2.9 27 54-80 33-59 (110)
126 1lj9_A Transcriptional regulat 67.9 4 0.00014 31.0 3.4 37 43-80 33-69 (144)
127 1neq_A DNA-binding protein NER 67.9 1.6 5.6E-05 29.8 0.9 26 52-77 20-45 (74)
128 2oz6_A Virulence factor regula 67.8 2.8 9.4E-05 34.0 2.5 43 38-80 135-190 (207)
129 2fmy_A COOA, carbon monoxide o 67.7 2.1 7.2E-05 35.3 1.8 43 38-80 137-193 (220)
130 2hin_A GP39, repressor protein 67.4 1.7 5.9E-05 29.5 1.0 21 57-77 13-33 (71)
131 2nnn_A Probable transcriptiona 67.4 3.6 0.00012 31.0 2.9 43 37-80 35-78 (140)
132 3cdh_A Transcriptional regulat 67.1 3.6 0.00012 31.8 3.0 28 53-80 56-83 (155)
133 3hot_A Transposable element ma 67.0 12 0.0004 33.1 6.8 162 6-173 32-219 (345)
134 3nqo_A MARR-family transcripti 66.9 6.2 0.00021 31.9 4.5 43 38-80 39-83 (189)
135 3uj3_X DNA-invertase; helix-tu 66.8 1.2 4E-05 36.6 0.0 36 43-78 147-182 (193)
136 3bj6_A Transcriptional regulat 66.8 4.5 0.00015 31.0 3.5 42 38-80 38-80 (152)
137 3fx3_A Cyclic nucleotide-bindi 66.7 1.6 5.6E-05 36.4 0.9 45 36-80 150-204 (237)
138 2xi8_A Putative transcription 66.5 1.5 5.2E-05 28.3 0.5 25 52-76 12-36 (66)
139 2zcw_A TTHA1359, transcription 66.4 3.6 0.00012 33.3 3.0 43 38-80 117-172 (202)
140 3jth_A Transcription activator 66.1 1.9 6.6E-05 30.8 1.1 32 49-80 30-62 (98)
141 3s2w_A Transcriptional regulat 66.1 4.9 0.00017 31.3 3.6 38 42-80 53-90 (159)
142 3iwz_A CAP-like, catabolite ac 65.9 3.7 0.00013 33.9 3.0 43 38-80 158-213 (230)
143 3jw4_A Transcriptional regulat 65.9 3.8 0.00013 31.4 2.8 43 38-80 39-83 (148)
144 2fbi_A Probable transcriptiona 65.6 3.3 0.00011 31.3 2.4 42 38-80 34-76 (142)
145 3b02_A Transcriptional regulat 65.5 3.2 0.00011 33.4 2.5 44 37-80 109-165 (195)
146 1jgs_A Multiple antibiotic res 65.5 4.4 0.00015 30.5 3.1 42 38-80 32-74 (138)
147 2fu4_A Ferric uptake regulatio 65.3 3.2 0.00011 28.5 2.1 28 54-81 33-65 (83)
148 2a61_A Transcriptional regulat 65.1 3.9 0.00013 31.0 2.8 42 38-80 31-73 (145)
149 1s3j_A YUSO protein; structura 65.0 3 0.0001 32.2 2.1 42 38-80 35-77 (155)
150 3fmy_A HTH-type transcriptiona 65.0 1.9 6.5E-05 29.0 0.8 28 50-77 20-47 (73)
151 3pqk_A Biofilm growth-associat 64.9 2.5 8.5E-05 30.4 1.5 28 53-80 35-62 (102)
152 1p6r_A Penicillinase repressor 64.7 2.2 7.5E-05 29.4 1.1 42 38-80 7-53 (82)
153 1zug_A Phage 434 CRO protein; 64.7 1.7 5.9E-05 28.6 0.5 25 52-76 14-38 (71)
154 1ft9_A Carbon monoxide oxidati 64.6 3.2 0.00011 34.2 2.3 43 38-80 133-189 (222)
155 2a6c_A Helix-turn-helix motif; 64.6 2.3 7.8E-05 29.4 1.2 26 51-76 28-53 (83)
156 3f6o_A Probable transcriptiona 64.6 2.7 9.2E-05 31.3 1.7 29 52-80 29-57 (118)
157 4fx0_A Probable transcriptiona 64.4 7.5 0.00026 30.0 4.4 43 38-80 31-78 (148)
158 3kz3_A Repressor protein CI; f 64.4 1.8 6E-05 29.6 0.6 25 52-76 23-47 (80)
159 1r69_A Repressor protein CI; g 64.4 1.8 6E-05 28.3 0.5 26 51-76 11-36 (69)
160 2eth_A Transcriptional regulat 64.3 4.2 0.00014 31.4 2.9 43 37-80 41-84 (154)
161 3bdd_A Regulatory protein MARR 64.1 4.2 0.00014 30.7 2.8 28 53-80 44-71 (142)
162 2qww_A Transcriptional regulat 64.1 4.9 0.00017 30.9 3.2 42 38-80 39-81 (154)
163 1z91_A Organic hydroperoxide r 63.8 4.1 0.00014 31.0 2.7 44 37-81 37-81 (147)
164 3f6v_A Possible transcriptiona 63.7 2.9 0.0001 32.8 1.8 30 52-81 69-98 (151)
165 1rzs_A Antirepressor, regulato 63.5 0.7 2.4E-05 30.3 -1.6 22 54-75 10-31 (61)
166 3la7_A Global nitrogen regulat 63.4 4.5 0.00015 34.0 3.1 43 38-80 163-219 (243)
167 3boq_A Transcriptional regulat 63.4 2.6 9E-05 32.8 1.5 43 38-80 45-88 (160)
168 1ub9_A Hypothetical protein PH 63.3 2.2 7.4E-05 30.3 0.9 29 53-81 29-57 (100)
169 3kp7_A Transcriptional regulat 63.3 2.7 9.3E-05 32.4 1.5 41 38-80 36-77 (151)
170 1u2w_A CADC repressor, cadmium 63.2 2.1 7.3E-05 32.2 0.9 28 53-80 55-82 (122)
171 3qq6_A HTH-type transcriptiona 63.1 2.3 7.9E-05 29.0 1.0 29 49-77 18-46 (78)
172 2fa5_A Transcriptional regulat 63.1 5.2 0.00018 31.1 3.2 42 38-80 47-89 (162)
173 3omt_A Uncharacterized protein 63.1 1.9 6.6E-05 28.8 0.5 26 52-77 19-44 (73)
174 3dkw_A DNR protein; CRP-FNR, H 62.8 4.3 0.00015 33.4 2.8 44 38-81 151-205 (227)
175 3cjn_A Transcriptional regulat 62.7 4 0.00014 31.8 2.5 42 38-80 50-92 (162)
176 2cyy_A Putative HTH-type trans 62.6 6.5 0.00022 30.5 3.7 29 53-81 20-48 (151)
177 4ham_A LMO2241 protein; struct 62.5 6.4 0.00022 30.0 3.6 43 36-78 11-62 (134)
178 3bd1_A CRO protein; transcript 62.5 1.8 6.2E-05 29.5 0.3 24 53-77 11-34 (79)
179 2w48_A Sorbitol operon regulat 62.3 4.5 0.00015 35.9 3.0 33 46-78 13-45 (315)
180 2p5k_A Arginine repressor; DNA 62.3 3.7 0.00013 26.5 1.9 23 54-76 19-46 (64)
181 1mkm_A ICLR transcriptional re 62.2 3.6 0.00012 35.1 2.3 41 40-80 6-49 (249)
182 1fx7_A Iron-dependent represso 62.0 4.3 0.00015 34.2 2.7 40 40-79 7-49 (230)
183 2b5a_A C.BCLI; helix-turn-heli 61.9 2.5 8.6E-05 28.3 1.0 25 52-76 21-45 (77)
184 2cfx_A HTH-type transcriptiona 61.9 5.6 0.00019 30.6 3.2 28 53-80 18-45 (144)
185 2hzt_A Putative HTH-type trans 61.6 3.9 0.00013 29.8 2.1 28 53-80 26-54 (107)
186 4ghj_A Probable transcriptiona 61.1 2.1 7E-05 31.3 0.4 37 40-76 33-71 (101)
187 2w25_A Probable transcriptiona 60.5 6 0.00021 30.6 3.1 28 53-80 20-47 (150)
188 3f3x_A Transcriptional regulat 60.4 6 0.0002 30.0 3.1 25 56-80 52-76 (144)
189 4ev0_A Transcription regulator 60.3 3.6 0.00012 33.6 1.8 43 38-80 140-189 (216)
190 2fbk_A Transcriptional regulat 60.2 7.2 0.00025 31.1 3.6 44 38-81 67-113 (181)
191 3eus_A DNA-binding protein; st 60.0 3.1 0.0001 29.0 1.2 33 44-76 15-49 (86)
192 2r1j_L Repressor protein C2; p 59.9 2.2 7.5E-05 27.7 0.4 25 52-76 16-40 (68)
193 3b7h_A Prophage LP1 protein 11 59.8 2.7 9.1E-05 28.2 0.8 26 52-77 18-43 (78)
194 2k9q_A Uncharacterized protein 59.8 2 6.9E-05 29.0 0.2 26 51-76 12-37 (77)
195 1i1g_A Transcriptional regulat 59.5 6 0.00021 30.1 2.9 28 53-80 17-44 (141)
196 1vz0_A PARB, chromosome partit 59.5 5 0.00017 33.9 2.6 41 36-76 116-156 (230)
197 2dbb_A Putative HTH-type trans 59.3 7.5 0.00026 30.1 3.5 28 53-80 22-49 (151)
198 3qp6_A CVIR transcriptional re 59.1 5.8 0.0002 34.2 3.0 46 36-83 196-241 (265)
199 2pn6_A ST1022, 150AA long hypo 59.0 6.5 0.00022 30.4 3.1 27 54-80 17-43 (150)
200 3e6c_C CPRK, cyclic nucleotide 58.9 4.8 0.00016 33.9 2.4 44 37-80 146-203 (250)
201 1y7y_A C.AHDI; helix-turn-heli 58.8 3.1 0.00011 27.5 1.0 25 52-76 24-48 (74)
202 2wiu_B HTH-type transcriptiona 58.8 3.3 0.00011 28.6 1.1 25 52-76 23-47 (88)
203 3kcc_A Catabolite gene activat 58.7 4.6 0.00016 34.4 2.3 43 38-80 188-243 (260)
204 2nyx_A Probable transcriptiona 58.7 5.4 0.00019 31.4 2.6 42 38-80 43-85 (168)
205 2cg4_A Regulatory protein ASNC 58.6 7.5 0.00025 30.1 3.4 29 53-81 21-49 (152)
206 1xwr_A Regulatory protein CII; 58.3 3.4 0.00012 29.9 1.1 30 48-78 18-47 (97)
207 3bs3_A Putative DNA-binding pr 58.1 2.6 8.9E-05 28.1 0.5 25 52-76 21-45 (76)
208 1okr_A MECI, methicillin resis 58.1 3.1 0.00011 30.9 1.0 42 38-80 8-54 (123)
209 3d0s_A Transcriptional regulat 58.0 6 0.0002 32.5 2.9 43 38-80 147-203 (227)
210 2o0y_A Transcriptional regulat 57.2 4.8 0.00016 34.6 2.2 45 36-80 17-64 (260)
211 1adr_A P22 C2 repressor; trans 56.9 3 0.0001 27.8 0.6 25 52-76 16-40 (76)
212 3s8q_A R-M controller protein; 56.7 3.5 0.00012 28.1 1.0 34 44-77 12-47 (82)
213 2kpj_A SOS-response transcript 56.7 3.7 0.00013 29.0 1.2 25 52-76 20-44 (94)
214 3t76_A VANU, transcriptional r 56.6 3.5 0.00012 29.1 1.0 28 50-77 33-60 (88)
215 2p5v_A Transcriptional regulat 56.5 8 0.00027 30.4 3.2 27 54-80 24-50 (162)
216 2ofy_A Putative XRE-family tra 56.4 5.2 0.00018 27.5 1.9 34 44-77 17-50 (86)
217 2f2e_A PA1607; transcription f 56.0 5 0.00017 31.2 1.9 29 53-81 36-64 (146)
218 3e6m_A MARR family transcripti 56.0 5.1 0.00017 31.2 2.0 42 38-80 51-93 (161)
219 3f6w_A XRE-family like protein 56.0 3.1 0.00011 28.4 0.6 25 52-76 25-49 (83)
220 2zkz_A Transcriptional repress 55.9 3.6 0.00012 29.5 1.0 29 53-81 40-68 (99)
221 2ovg_A Phage lambda CRO; trans 55.8 1.6 5.3E-05 29.2 -1.0 21 56-76 15-35 (66)
222 2vn2_A DNAD, chromosome replic 55.7 7.4 0.00025 29.4 2.8 44 37-80 29-77 (128)
223 2g7u_A Transcriptional regulat 55.7 6.8 0.00023 33.5 2.9 44 37-80 9-55 (257)
224 2fxa_A Protease production reg 55.5 7.2 0.00025 32.1 2.9 42 38-80 46-88 (207)
225 3o9x_A Uncharacterized HTH-typ 55.4 3.4 0.00012 31.3 0.8 27 50-76 80-106 (133)
226 2xrn_A HTH-type transcriptiona 55.3 4.7 0.00016 34.2 1.8 40 41-80 5-47 (241)
227 3trb_A Virulence-associated pr 55.3 3 0.0001 30.5 0.5 40 36-76 10-49 (104)
228 3e97_A Transcriptional regulat 55.2 5.5 0.00019 32.8 2.2 42 39-80 146-201 (231)
229 2ewt_A BLDD, putative DNA-bind 55.1 3.7 0.00013 26.9 0.9 25 52-76 19-45 (71)
230 1yyv_A Putative transcriptiona 54.9 5.3 0.00018 30.4 1.8 35 47-81 40-76 (131)
231 1o5l_A Transcriptional regulat 54.5 2.6 8.9E-05 34.6 0.0 43 38-80 141-190 (213)
232 1gdt_A GD resolvase, protein ( 54.3 3.5 0.00012 33.3 0.7 28 49-76 153-180 (183)
233 1lmb_3 Protein (lambda repress 54.1 2.9 9.8E-05 29.3 0.2 26 51-76 27-52 (92)
234 2g9w_A Conserved hypothetical 54.1 5 0.00017 30.7 1.6 40 41-80 11-54 (138)
235 2ia0_A Putative HTH-type trans 54.1 9.2 0.00031 30.5 3.2 42 38-80 15-57 (171)
236 2ef8_A C.ECOT38IS, putative tr 53.5 4.2 0.00014 27.7 1.0 25 52-76 21-45 (84)
237 2gau_A Transcriptional regulat 53.5 8.9 0.0003 31.6 3.2 43 38-80 151-206 (232)
238 2hsg_A Glucose-resistance amyl 53.5 3.2 0.00011 36.6 0.4 23 55-77 3-25 (332)
239 1x57_A Endothelial differentia 53.1 11 0.00038 26.1 3.2 27 50-76 22-48 (91)
240 2r0q_C Putative transposon TN5 53.0 5.1 0.00017 33.1 1.6 31 47-77 168-198 (209)
241 1xn7_A Hypothetical protein YH 53.0 8.1 0.00028 26.6 2.4 27 54-80 16-42 (78)
242 1qpz_A PURA, protein (purine n 52.7 3.3 0.00011 36.7 0.4 22 56-77 2-23 (340)
243 2ppx_A AGR_C_3184P, uncharacte 52.5 4.2 0.00014 29.1 0.9 26 51-76 40-65 (99)
244 3h5t_A Transcriptional regulat 51.9 3.3 0.00011 37.1 0.3 22 55-76 10-31 (366)
245 2e1c_A Putative HTH-type trans 51.9 10 0.00036 30.2 3.2 28 53-80 40-67 (171)
246 3plo_X DNA-invertase; resolvas 51.8 3.1 0.0001 34.0 0.0 38 44-81 148-185 (193)
247 3h5o_A Transcriptional regulat 51.6 3.1 0.00011 36.8 0.0 23 55-77 5-27 (339)
248 1z7u_A Hypothetical protein EF 51.1 7.7 0.00026 28.4 2.2 29 53-81 34-63 (112)
249 1sfu_A 34L protein; protein/Z- 50.9 13 0.00043 25.5 3.0 39 39-77 12-52 (75)
250 2o20_A Catabolite control prot 50.8 3.2 0.00011 36.6 0.0 23 55-77 6-28 (332)
251 3ctp_A Periplasmic binding pro 50.6 3.3 0.00011 36.5 0.0 22 56-77 4-25 (330)
252 3dn7_A Cyclic nucleotide bindi 50.5 3.3 0.00011 33.2 0.0 42 38-79 149-193 (194)
253 2ia2_A Putative transcriptiona 50.5 6.6 0.00023 33.8 1.9 44 37-80 16-62 (265)
254 2qq9_A Diphtheria toxin repres 50.2 7.3 0.00025 32.7 2.1 39 41-79 8-49 (226)
255 3kjx_A Transcriptional regulat 50.2 3.5 0.00012 36.6 0.1 23 55-77 11-33 (344)
256 2ict_A Antitoxin HIGA; helix-t 50.1 4.2 0.00014 28.6 0.5 27 51-77 18-44 (94)
257 2obp_A Putative DNA-binding pr 50.1 8.2 0.00028 27.8 2.1 40 41-80 18-62 (96)
258 2k4b_A Transcriptional regulat 50.0 5.6 0.00019 28.8 1.2 40 40-80 36-79 (99)
259 2wte_A CSA3; antiviral protein 50.0 9.3 0.00032 32.6 2.8 28 53-80 165-192 (244)
260 2h09_A Transcriptional regulat 49.9 8.3 0.00028 29.9 2.3 28 53-80 53-80 (155)
261 3bil_A Probable LACI-family tr 49.7 3.5 0.00012 36.8 0.0 22 56-77 10-31 (348)
262 3cec_A Putative antidote prote 49.5 4 0.00014 29.4 0.4 27 51-77 28-54 (104)
263 2fsw_A PG_0823 protein; alpha- 49.4 6.6 0.00022 28.5 1.5 29 52-80 36-65 (107)
264 3dbi_A Sugar-binding transcrip 49.4 3.5 0.00012 36.4 0.0 22 56-77 5-26 (338)
265 3jvd_A Transcriptional regulat 49.3 3.5 0.00012 36.5 0.0 23 55-77 7-29 (333)
266 1jye_A Lactose operon represso 49.0 3.6 0.00012 36.7 0.0 23 55-77 4-26 (349)
267 2eby_A Putative HTH-type trans 49.0 4.5 0.00015 29.6 0.5 27 50-76 20-46 (113)
268 3kxa_A NGO0477 protein, putati 48.9 6.1 0.00021 30.5 1.3 28 50-77 77-104 (141)
269 1a04_A Nitrate/nitrite respons 48.8 7.3 0.00025 31.7 1.9 45 37-83 154-198 (215)
270 3vk0_A NHTF, transcriptional r 48.6 15 0.0005 26.9 3.4 38 39-76 17-56 (114)
271 3bdn_A Lambda repressor; repre 47.9 10 0.00034 31.7 2.7 34 44-77 18-53 (236)
272 3e3m_A Transcriptional regulat 47.9 3.9 0.00013 36.5 0.0 22 56-77 14-35 (355)
273 3oou_A LIN2118 protein; protei 47.8 12 0.00042 26.9 2.8 30 50-79 17-46 (108)
274 3g5g_A Regulatory protein; tra 47.3 6 0.0002 28.4 1.0 38 40-77 25-64 (99)
275 3f52_A CLP gene regulator (CLG 47.3 6.5 0.00022 28.9 1.2 38 39-76 24-63 (117)
276 3r4k_A Transcriptional regulat 47.2 7.3 0.00025 33.4 1.7 41 40-80 4-47 (260)
277 1j5y_A Transcriptional regulat 46.9 11 0.00038 30.5 2.7 39 42-80 21-62 (187)
278 1j9i_A GPNU1 DBD;, terminase s 46.8 4 0.00014 27.1 -0.1 21 57-77 5-25 (68)
279 2b0l_A GTP-sensing transcripti 46.6 5.8 0.0002 28.8 0.8 31 49-79 35-68 (102)
280 2o38_A Hypothetical protein; a 46.4 6.2 0.00021 29.6 1.0 33 44-76 41-75 (120)
281 1uly_A Hypothetical protein PH 46.4 8.6 0.00029 31.4 1.9 37 42-80 23-59 (192)
282 3k2z_A LEXA repressor; winged 46.2 12 0.00041 30.5 2.8 26 54-79 24-49 (196)
283 3n0r_A Response regulator; sig 46.0 8.2 0.00028 33.6 1.8 46 38-84 112-157 (286)
284 1b0n_A Protein (SINR protein); 46.0 6.4 0.00022 28.4 1.0 27 51-77 11-37 (111)
285 3hrs_A Metalloregulator SCAR; 45.9 11 0.00039 31.1 2.7 37 43-79 6-45 (214)
286 3df8_A Possible HXLR family tr 45.6 12 0.0004 27.4 2.4 35 47-81 32-70 (111)
287 2qlz_A Transcription factor PF 45.5 16 0.00056 30.8 3.6 28 53-80 24-51 (232)
288 3op9_A PLI0006 protein; struct 45.3 6.1 0.00021 28.9 0.8 26 51-76 19-44 (114)
289 2l49_A C protein; P2 bacteriop 45.3 5.9 0.0002 28.0 0.7 26 51-76 14-39 (99)
290 1z4h_A TORI, TOR inhibition pr 45.2 5.4 0.00018 26.3 0.4 22 56-77 12-33 (66)
291 1v4r_A Transcriptional repress 45.2 4.5 0.00015 29.2 -0.0 23 56-78 37-59 (102)
292 3cta_A Riboflavin kinase; stru 45.2 10 0.00035 31.7 2.3 27 54-80 27-53 (230)
293 2bgc_A PRFA; bacterial infecti 44.4 9.4 0.00032 31.7 1.9 43 38-80 138-196 (238)
294 2k02_A Ferrous iron transport 44.2 8.6 0.00029 27.1 1.4 26 54-79 16-41 (87)
295 2v79_A DNA replication protein 44.1 17 0.00056 27.9 3.1 27 54-80 51-77 (135)
296 3mlf_A Transcriptional regulat 44.1 7.7 0.00026 28.5 1.2 27 50-76 32-58 (111)
297 3c3w_A Two component transcrip 43.5 8.2 0.00028 31.8 1.4 45 36-82 148-192 (225)
298 3ic7_A Putative transcriptiona 43.4 13 0.00043 28.0 2.4 24 56-79 37-60 (126)
299 3mn2_A Probable ARAC family tr 43.3 15 0.0005 26.5 2.6 28 51-78 15-42 (108)
300 2di3_A Bacterial regulatory pr 43.3 10 0.00035 31.8 2.0 22 58-79 32-53 (239)
301 3i4p_A Transcriptional regulat 43.2 16 0.00056 28.6 3.1 27 54-80 17-43 (162)
302 3ivp_A Putative transposon-rel 42.6 6.8 0.00023 29.2 0.7 26 51-76 22-47 (126)
303 2auw_A Hypothetical protein NE 42.6 6.1 0.00021 31.7 0.4 29 48-76 97-125 (170)
304 3tqn_A Transcriptional regulat 42.4 7.8 0.00027 28.5 1.0 24 56-79 35-58 (113)
305 2jvl_A TRMBF1; coactivator, he 41.9 17 0.0006 26.2 2.9 33 44-76 35-71 (107)
306 1c9b_A General transcription f 41.7 19 0.00066 29.4 3.4 43 49-92 154-196 (207)
307 1rr7_A Middle operon regulator 41.2 7.4 0.00025 29.7 0.7 28 53-80 91-118 (129)
308 2p5t_A Putative transcriptiona 41.1 5.7 0.00019 31.2 0.0 25 52-76 12-36 (158)
309 3lsg_A Two-component response 41.1 29 0.00098 24.6 3.9 71 2-79 21-94 (103)
310 2gqq_A Leucine-responsive regu 41.1 19 0.00064 28.2 3.1 29 52-80 25-53 (163)
311 2k9s_A Arabinose operon regula 41.0 18 0.00062 25.9 2.8 26 53-78 19-44 (107)
312 2wus_R RODZ, putative uncharac 40.9 8 0.00027 28.6 0.8 27 51-77 17-43 (112)
313 2h8r_A Hepatocyte nuclear fact 40.6 8.8 0.0003 32.1 1.1 31 46-76 36-66 (221)
314 2k27_A Paired box protein PAX- 40.5 45 0.0016 25.6 5.4 75 3-78 44-135 (159)
315 3mn2_A Probable ARAC family tr 40.3 33 0.0011 24.4 4.2 72 2-79 20-95 (108)
316 1yio_A Response regulatory pro 39.8 11 0.00037 30.3 1.6 44 38-83 143-186 (208)
317 3neu_A LIN1836 protein; struct 39.2 8.7 0.0003 28.9 0.8 24 56-79 39-62 (125)
318 1bl0_A Protein (multiple antib 38.8 22 0.00075 26.5 3.1 27 52-78 25-51 (129)
319 3oio_A Transcriptional regulat 38.6 16 0.00054 26.5 2.2 26 53-78 22-47 (113)
320 1ic8_A Hepatocyte nuclear fact 38.0 8.7 0.0003 31.5 0.7 26 51-76 40-65 (194)
321 3oou_A LIN2118 protein; protei 37.7 35 0.0012 24.4 4.0 70 3-79 24-96 (108)
322 1ntc_A Protein (nitrogen regul 37.6 22 0.00075 24.9 2.7 26 53-78 63-88 (91)
323 3mkl_A HTH-type transcriptiona 37.3 43 0.0015 24.4 4.5 71 3-80 26-98 (120)
324 1sd4_A Penicillinase repressor 37.2 17 0.00057 26.8 2.1 42 38-80 8-54 (126)
325 1p4x_A Staphylococcal accessor 37.1 14 0.00049 31.5 1.9 44 38-81 156-201 (250)
326 3by6_A Predicted transcription 36.7 11 0.00037 28.5 1.0 23 56-78 37-59 (126)
327 3lsg_A Two-component response 36.5 25 0.00085 24.9 2.9 25 54-78 19-43 (103)
328 2y75_A HTH-type transcriptiona 36.3 17 0.0006 27.1 2.1 26 55-80 27-52 (129)
329 3mq0_A Transcriptional repress 36.0 12 0.00041 32.4 1.3 45 36-80 24-71 (275)
330 2o3f_A Putative HTH-type trans 35.9 11 0.00037 27.8 0.8 25 54-78 39-63 (111)
331 1u8b_A ADA polyprotein; protei 35.9 18 0.00061 27.2 2.2 39 41-79 78-118 (133)
332 2o0m_A Transcriptional regulat 35.8 7.7 0.00026 34.8 0.0 36 43-79 24-59 (345)
333 3klo_A Transcriptional regulat 35.3 14 0.00048 30.2 1.6 41 38-80 160-200 (225)
334 3c19_A Uncharacterized protein 33.9 22 0.00075 28.8 2.4 28 115-152 38-65 (186)
335 1ixc_A CBNR, LYSR-type regulat 33.6 19 0.00065 30.4 2.2 33 52-84 13-45 (294)
336 2fe3_A Peroxide operon regulat 33.4 32 0.0011 26.4 3.3 27 54-80 37-68 (145)
337 2ek5_A Predicted transcription 33.0 13 0.00046 28.0 1.0 22 56-77 30-51 (129)
338 3gbg_A TCP pilus virulence reg 32.4 56 0.0019 27.5 5.1 29 49-77 180-208 (276)
339 3lfp_A CSP231I C protein; tran 32.4 14 0.00048 26.0 1.0 27 50-76 10-40 (98)
340 3iwf_A Transcription regulator 32.2 13 0.00045 27.2 0.8 25 54-78 35-59 (107)
341 3b73_A PHIH1 repressor-like pr 32.2 25 0.00085 25.9 2.3 39 41-80 15-55 (111)
342 3e7l_A Transcriptional regulat 31.5 24 0.00082 22.7 1.9 25 53-77 31-55 (63)
343 1nr3_A MTH0916, DNA-binding pr 31.4 6.4 0.00022 29.5 -1.1 25 53-77 4-28 (122)
344 1ais_B TFB TFIIB, protein (tra 31.2 43 0.0015 27.0 3.9 36 48-83 159-194 (200)
345 3mkl_A HTH-type transcriptiona 30.6 27 0.00093 25.6 2.4 27 52-78 21-47 (120)
346 1r7j_A Conserved hypothetical 30.2 34 0.0012 24.2 2.8 36 44-79 10-45 (95)
347 3fym_A Putative uncharacterize 30.2 13 0.00043 28.2 0.4 28 50-77 12-39 (130)
348 2p8t_A Hypothetical protein PH 29.8 28 0.00095 28.6 2.4 40 41-80 17-56 (200)
349 3hot_A Transposable element ma 29.6 16 0.00056 32.2 1.1 35 45-79 13-54 (345)
350 2fjr_A Repressor protein CI; g 29.6 24 0.00081 28.2 2.0 22 56-77 22-43 (189)
351 1y9q_A Transcriptional regulat 29.4 17 0.00057 29.2 1.0 26 52-77 22-47 (192)
352 4a5n_A Uncharacterized HTH-typ 29.3 31 0.0011 26.2 2.5 33 48-80 32-66 (131)
353 1bia_A BIRA bifunctional prote 29.2 23 0.0008 31.3 2.0 34 47-80 10-45 (321)
354 1hsj_A Fusion protein consisti 28.7 35 0.0012 31.7 3.3 43 37-80 401-446 (487)
355 3f8m_A GNTR-family protein tra 28.7 40 0.0014 28.4 3.4 24 56-79 38-61 (248)
356 1jhf_A LEXA repressor; LEXA SO 28.4 28 0.00097 28.1 2.3 26 53-78 22-50 (202)
357 3oio_A Transcriptional regulat 28.3 61 0.0021 23.2 4.0 72 2-79 25-98 (113)
358 1z6r_A MLC protein; transcript 28.3 33 0.0011 31.2 2.9 28 53-80 29-56 (406)
359 3hhg_A Transcriptional regulat 28.2 26 0.00089 29.7 2.1 37 48-84 11-47 (306)
360 1al3_A Cys regulon transcripti 28.1 12 0.00042 32.4 0.0 41 47-87 9-49 (324)
361 2ijl_A AGR_C_4647P, molybdenum 28.0 17 0.0006 27.8 0.8 41 43-84 28-68 (135)
362 2p4w_A Transcriptional regulat 27.9 22 0.00075 29.2 1.5 29 52-80 26-54 (202)
363 1wi9_A Protein C20ORF116 homol 27.8 24 0.00081 23.8 1.4 17 146-162 51-67 (72)
364 3k69_A Putative transcription 27.0 32 0.0011 27.1 2.3 26 55-80 29-54 (162)
365 3isp_A HTH-type transcriptiona 26.8 27 0.00094 29.6 2.0 42 48-89 14-55 (303)
366 1bja_A Transcription regulator 26.1 37 0.0013 24.3 2.2 36 43-79 20-56 (95)
367 2bnm_A Epoxidase; oxidoreducta 25.4 18 0.00061 29.1 0.5 26 52-77 21-46 (198)
368 1z05_A Transcriptional regulat 25.3 30 0.001 31.8 2.1 28 53-80 52-79 (429)
369 2v57_A TETR family transcripti 24.7 21 0.00073 27.8 0.8 32 53-84 31-62 (190)
370 3t8r_A Staphylococcus aureus C 24.6 33 0.0011 26.3 1.9 43 38-80 6-54 (143)
371 3u1d_A Uncharacterized protein 24.3 38 0.0013 26.5 2.2 40 42-81 30-73 (151)
372 2zcm_A Biofilm operon icaabcd 24.3 45 0.0016 25.9 2.8 32 53-84 26-57 (192)
373 1umq_A Photosynthetic apparatu 24.2 34 0.0012 23.6 1.7 25 53-77 53-77 (81)
374 3fxq_A LYSR type regulator of 24.0 32 0.0011 29.2 1.9 33 52-84 14-46 (305)
375 1p4x_A Staphylococcal accessor 23.8 63 0.0022 27.3 3.7 43 38-80 32-76 (250)
376 2esn_A Probable transcriptiona 23.6 25 0.00085 30.0 1.1 33 52-84 22-54 (310)
377 2opt_A Actii protein; helical 23.5 41 0.0014 27.9 2.5 48 37-84 5-56 (234)
378 3bqz_B HTH-type transcriptiona 23.3 19 0.00063 28.2 0.2 32 53-84 21-52 (194)
379 1xmk_A Double-stranded RNA-spe 23.2 33 0.0011 23.6 1.4 38 40-78 12-50 (79)
380 3vpr_A Transcriptional regulat 23.2 21 0.00071 28.0 0.5 30 53-82 22-51 (190)
381 2fq4_A Transcriptional regulat 23.1 19 0.00065 28.4 0.2 32 53-84 31-62 (192)
382 2hoe_A N-acetylglucosamine kin 22.8 31 0.0011 31.1 1.7 30 52-81 31-60 (380)
383 1g2h_A Transcriptional regulat 22.7 63 0.0022 20.5 2.8 23 55-77 34-56 (61)
384 2o03_A Probable zinc uptake re 22.7 25 0.00085 26.5 0.8 16 65-80 42-57 (131)
385 3szp_A Transcriptional regulat 22.6 30 0.001 28.8 1.5 36 49-84 10-45 (291)
386 1y6u_A XIS, excisionase from t 22.0 22 0.00076 23.8 0.4 23 55-77 17-39 (70)
387 3gzi_A Transcriptional regulat 22.0 22 0.00075 28.4 0.4 31 54-84 37-67 (218)
388 1mzb_A Ferric uptake regulatio 21.8 42 0.0014 25.3 2.0 17 65-81 50-66 (136)
389 3lwj_A Putative TETR-family tr 21.5 18 0.00063 28.5 -0.2 31 54-84 32-62 (202)
390 3qkx_A Uncharacterized HTH-typ 21.4 19 0.00064 27.9 -0.1 31 54-84 28-58 (188)
391 3lwf_A LIN1550 protein, putati 21.4 54 0.0019 25.7 2.6 45 36-80 20-70 (159)
392 3fzv_A Probable transcriptiona 21.1 28 0.00095 29.5 0.9 40 48-87 12-51 (306)
393 3dew_A Transcriptional regulat 20.9 19 0.00066 28.2 -0.2 31 54-84 28-58 (206)
394 4ich_A Transcriptional regulat 20.9 21 0.0007 31.0 0.0 34 44-77 31-66 (311)
395 4g6q_A Putative uncharacterize 20.6 50 0.0017 26.4 2.3 33 49-81 30-64 (182)
396 2d6y_A Putative TETR family re 20.3 35 0.0012 27.1 1.3 31 54-84 28-58 (202)
397 2h9b_A HTH-type transcriptiona 20.2 22 0.00075 30.6 0.0 37 50-86 11-47 (312)
398 3egq_A TETR family transcripti 20.1 18 0.00061 27.7 -0.5 31 54-84 24-54 (170)
399 3lhq_A Acrab operon repressor 20.1 20 0.0007 28.4 -0.2 31 54-84 34-64 (220)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.36 E-value=0.0019 Score=40.57 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...++++++..+... +..|.++.++|..+|||.+||.+++.+.
T Consensus 3 ~~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 3 GSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp SCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 356777777555444 4678999999999999999999998753
No 2
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.06 E-value=0.0058 Score=45.13 Aligned_cols=61 Identities=13% Similarity=0.264 Sum_probs=49.0
Q ss_pred hcCCHHHHHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 10 FRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 10 frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
-|||.+.|+.+...++ ++ +..+-++=.||-.|.++.++|..+|+|+++|++.+.+.-....
T Consensus 3 ~rmT~~eFe~~~~~l~------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 3 KRLTESQFQEAIQGLE------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCCHHHHHHHHTTCC------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHccCC------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 3799999999986652 22 2345566677888999999999999999999999999877654
No 3
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=95.98 E-value=0.0047 Score=40.82 Aligned_cols=46 Identities=7% Similarity=-0.041 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHhhhccCCc----ccccccccCCChhhHHhHHhHhHHH
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSP----YHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~----~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
+...+++.++-+ +.++..|.+ ...+|..||||.+|+.+++...-..
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~ 52 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNL 52 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 456889999888 778888888 9999999999999999998865443
No 4
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=95.45 E-value=0.0079 Score=35.06 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=18.8
Q ss_pred CChhHHHHHhcCCHHHHHHH
Q psy15697 1 MTPFAFKEAFRLSATQVEFI 20 (332)
Q Consensus 1 ~~d~~f~~~frms~~~F~~L 20 (332)
|||++|...|+|+++.|..|
T Consensus 1 Lsd~dF~~vFgmsr~eF~~L 20 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFANL 20 (35)
T ss_dssp CCHHHHHHHHSSCHHHHHHS
T ss_pred CCHHHHHHHHCCCHHHHHHC
Confidence 68999999999999999877
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=95.17 E-value=0.011 Score=34.95 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=18.8
Q ss_pred CChhHHHHHhcCCHHHHHHH
Q psy15697 1 MTPFAFKEAFRLSATQVEFI 20 (332)
Q Consensus 1 ~~d~~f~~~frms~~~F~~L 20 (332)
|+|++|...|+|+++.|..|
T Consensus 3 Lsd~dF~~vFgmsr~eF~~L 22 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAAL 22 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 68999999999999999876
No 6
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.03 E-value=0.01 Score=37.40 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 37 ALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.++++.. ..++..+..|.+..++|..+|||.+|+++++.+
T Consensus 5 ~~~~~~~-~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQ-EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHH-HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444433 233444667899999999999999999998865
No 7
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.75 E-value=0.044 Score=36.93 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+|+.++-.+.|+|+ .|.++.++|..+|+|.+||.+.+++....|..
T Consensus 15 ~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888877777664 58999999999999999999999998887765
No 8
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.63 E-value=0.019 Score=41.95 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHhhhcc-CCcccccccccCCChhhHHhHHhHh
Q psy15697 36 VALSAKEKVLSCLHWMGV-GSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~-g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...+++.++.+.-.++.. |.+...+|..||||.+|+++++.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 457888888888777777 8999999999999999999998754
No 9
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=94.58 E-value=0.031 Score=39.97 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHhhh-c--cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWM-G--VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L-~--~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+|+.++-.+.|+|+ . .|.++.++|..+|+|.+||..++.+....|-.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 478889988888884 4 78999999999999999999999988877655
No 10
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=94.58 E-value=0.022 Score=38.56 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHhh-h--ccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHW-M--GVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~-L--~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+|+.++-.+.|+| + ..|.++.++|..+|+|.+||...+.+....|-.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47889998888888 3 579999999999999999999999888776554
No 11
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=94.47 E-value=0.035 Score=38.10 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHhhh-c--cCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 36 VALSAKEKVLSCLHWM-G--VGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L-~--~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
..+|+.++-.+.|+|+ . .|.++.++|..+|+|.+||..+..+....|.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3578999988888884 3 6899999999999999999999999988887
No 12
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=93.94 E-value=0.014 Score=43.07 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhh-----hccC-CcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 38 LSAKEKVLSCLHW-----MGVG-SPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 38 ~~~~~~l~~~L~~-----L~~g-~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
+++.++-.+.++| |..| .+|+++|...|+|.+||+|+ ++.+.-+.
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 5677775554443 3466 99999999999999999999 66555433
No 13
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.42 E-value=0.078 Score=38.12 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+++.++-++.|+|+ .|.++.++|..+|+|.+||...+.+....|..
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 377888887777665 68999999999999999999999998888776
No 14
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=93.26 E-value=0.067 Score=39.33 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHhhh---ccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWM---GVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L---~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+|+.++-.+.|+|+ ..+.++.++|..+|+|.+||..+..+.+..|-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478899999999886 378999999999999999999999998888776
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=93.02 E-value=0.059 Score=38.46 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
...+.+.+..+.-.+ ..|.+...+|..||||.+|+++++.+.-..
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 467888776555444 678999999999999999999999876543
No 16
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=92.71 E-value=0.097 Score=38.11 Aligned_cols=45 Identities=9% Similarity=-0.203 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 34 RNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 34 ~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
.....+.+.++.+++..+..+.+..+++..|+||.+++.++...+
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999888765
No 17
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.63 E-value=0.098 Score=35.57 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
..+++.++-.+.+ +..|.++.++|..+|+|.+||...+.+....+..
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4577877766666 3789999999999999999999999988766543
No 18
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=92.18 E-value=0.062 Score=34.47 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.3
Q ss_pred hccCCcccccccccCCChhhHHhHHhH
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+..|.++.++|..+|+|++||++++.+
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 578999999999999999999998764
No 19
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=92.14 E-value=0.062 Score=36.43 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=18.7
Q ss_pred CChhHHHHHhcCCHHHHHHH
Q psy15697 1 MTPFAFKEAFRLSATQVEFI 20 (332)
Q Consensus 1 ~~d~~f~~~frms~~~F~~L 20 (332)
|||++|...|+|+++.|..|
T Consensus 34 LsdedF~~vFgmsr~eF~~L 53 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKL 53 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 68999999999999999887
No 20
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.99 E-value=0.085 Score=40.81 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...++.+++..+... +..|.+...+|..+|+|.+||++++.+.
T Consensus 4 ~~~~s~~~r~~i~~~-~~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 4 GSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp SCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cccCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 456778777666544 4789999999999999999999998865
No 21
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.89 E-value=0.53 Score=36.14 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=50.8
Q ss_pred ChhHHHHHhcCCHHHHHHHHHHhccCcC-CCCCCCCCCCHHHHHHHHHhhhccCCcccccccccC--CChhhHHhHHhHh
Q psy15697 2 TPFAFKEAFRLSATQVEFILEEIAPALT-TPTERNVALSAKEKVLSCLHWMGVGSPYHIIGATHG--PSKSSICRSIHEV 78 (332)
Q Consensus 2 ~d~~f~~~frms~~~F~~L~~~L~~~~~-~~~~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fg--is~sTv~r~~~~v 78 (332)
+-.+.-+.+++++.++...+......-. ...++...++++....+.-.......+...++..+| +|.+||++++++.
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 3345567899999999988876654321 123344557776553332222233468888999888 8999999999864
No 22
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=91.77 E-value=0.092 Score=34.32 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=29.4
Q ss_pred hccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
+..|.++.++|..+|+|.+||...+.+...-|.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 688999999999999999999999998776654
No 23
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=91.68 E-value=0.11 Score=36.61 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
..+++.++-.+.| +..|.++.++|..+|+|.+||...+.+....|.
T Consensus 20 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4578888877776 378999999999999999999999988776654
No 24
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=91.67 E-value=0.068 Score=36.02 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=18.6
Q ss_pred CChhHHHHHhcCCHHHHHHH
Q psy15697 1 MTPFAFKEAFRLSATQVEFI 20 (332)
Q Consensus 1 ~~d~~f~~~frms~~~F~~L 20 (332)
|+|++|...|+|+++.|..|
T Consensus 33 LsdedF~~vFgms~~eF~~L 52 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANL 52 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 68999999999999999876
No 25
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=91.51 E-value=0.27 Score=35.94 Aligned_cols=61 Identities=21% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 17 VEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 17 F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
...+++.|.+.- .....+++.++-.+.| +..|.++.++|..+|+|.+||...+.++...|.
T Consensus 18 ~~~~l~~l~~~~----~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 18 VAKLLEKISAGG----YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHCCC----CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHccCC----cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 445566666532 1246688888866655 468999999999999999999999998776654
No 26
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=91.23 E-value=0.14 Score=39.28 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHhhhccCCccc-ccccccCCChhhHHhHHhHhHHHHH
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYH-IIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~-~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
+..++.+.++-+.-.+..+|.+.. .+|..||||++|++++++.--....
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 467899999888776657776665 8999999999999999997665444
No 27
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.21 E-value=0.15 Score=36.91 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
..+++.++-.+.|. ..|.++.++|..+|+|.+||...+.+....|..
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 34788888777773 889999999999999999999999988877654
No 28
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=91.05 E-value=0.19 Score=37.80 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+|+.++-.+.|+| ..|.++.++|..+|+|.+||.+.+++....|..
T Consensus 23 L~~~~r~vl~l~y-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 23 LTDKQMNYIELYY-ADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp SCHHHHHHHHHHH-HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6777776666555 468999999999999999999999998888776
No 29
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=90.94 E-value=0.07 Score=36.01 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=18.3
Q ss_pred CChhHHHHHhcCCHHHHHHH
Q psy15697 1 MTPFAFKEAFRLSATQVEFI 20 (332)
Q Consensus 1 ~~d~~f~~~frms~~~F~~L 20 (332)
+||++|...|+|+++.|..|
T Consensus 33 LsdedF~~vFgmsr~eF~~L 52 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNAL 52 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 68999999999999999765
No 30
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.83 E-value=0.14 Score=38.59 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.+.+..+...+ ..|.+...+|..||||.+||++++.+.-.
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 457788877665544 58999999999999999999999987643
No 31
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=90.55 E-value=0.15 Score=36.56 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
..+++.++-.+.| +..|.++.++|..+|+|.+||...+.+....|.
T Consensus 28 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4477777776666 378999999999999999999999988776553
No 32
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=90.47 E-value=0.15 Score=39.98 Aligned_cols=44 Identities=9% Similarity=-0.096 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.+.+..+...+ ..|.+...+|..||||.+||++++.+...
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468888887776655 57899999999999999999999988653
No 33
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=90.40 E-value=0.26 Score=37.01 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+|+.++-.+.|+| ..|.++.++|..+|+|.+||...+++....|..
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6777776666655 568999999999999999999999999888876
No 34
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=90.25 E-value=0.08 Score=39.27 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhhhccC-------CcccccccccCCChhhHHhHHhHh
Q psy15697 36 VALSAKEKVLSCLHWMGVG-------SPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g-------~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...+++.++.++-.++..+ .+...+|..||||.+|+++++...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 4688999988877777665 789999999999999999998764
No 35
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=90.12 E-value=0.28 Score=39.97 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+|+.++-++.|+++ .|.++.++|..+|+|.+||...+.+....|-.
T Consensus 141 L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777776 58999999999999999999999999988877
No 36
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.05 E-value=0.16 Score=35.01 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
+++.++-.+.| + ..|.++.++|..+|+|.+||...+.+....|-
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 45666665655 3 78999999999999999999999988776554
No 37
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=89.57 E-value=0.34 Score=40.76 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
..+|+.++-.+.|+|+ .|.++.++|..+|+|.+||.+.+++....|-.
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3488899988888886 58999999999999999999999999888876
No 38
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=89.45 E-value=0.1 Score=37.12 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=18.9
Q ss_pred CChhHHHHHhcCCHHHHHHHH
Q psy15697 1 MTPFAFKEAFRLSATQVEFIL 21 (332)
Q Consensus 1 ~~d~~f~~~frms~~~F~~L~ 21 (332)
|+|++|...|+|+++.|..|=
T Consensus 48 LSdedF~~vFgMsr~eF~~LP 68 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLA 68 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999997763
No 39
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=89.09 E-value=0.52 Score=37.96 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|-.
T Consensus 136 L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 66777777777665 58999999999999999999999998887765
No 40
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=88.67 E-value=0.29 Score=35.06 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
...+++.++-.+.| +..|.++.++|..+|+|..||...+.++..-|.
T Consensus 27 ~~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45678877765544 459999999999999999999999998766543
No 41
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=88.00 E-value=0.18 Score=40.05 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...++.+.+..+...+ ..|.+...+|..||||.+||++++.+.
T Consensus 23 ~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp SCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467888887665544 678999999999999999999998764
No 42
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=87.63 E-value=0.31 Score=35.28 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHhhhccCCccccccccc-CCChhhHHhHHhHhHHHHHH
Q psy15697 33 ERNVALSAKEKVLSCLHWMGVGSPYHIIGATH-GPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 33 ~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~f-gis~sTv~r~~~~v~~~l~~ 84 (332)
.|...+...-|++|.|.+--++.++..+|..| |...|||...++++-..+..
T Consensus 25 ~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 25 RRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 44567788889999999999999999999999 89999999999998887654
No 43
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=87.36 E-value=0.26 Score=38.72 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHhh--hccCCccccccc----cc--CCChhhHHhHHhHhHH
Q psy15697 34 RNVALSAKEKVLSCLHW--MGVGSPYHIIGA----TH--GPSKSSICRSIHEVVP 80 (332)
Q Consensus 34 ~~~~~~~~~~l~~~L~~--L~~g~~~~~l~~----~f--gis~sTv~r~~~~v~~ 80 (332)
.+..++.++++.+..++ -..+.++.+||. .| +||++||+++++.=-.
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 46779999999998888 335568889999 89 9999999999987433
No 44
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=86.46 E-value=0.5 Score=37.34 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
..+|+.++-++.|+++. |.++.++|..+|+|.+||...+.+....|-.
T Consensus 92 ~~Lp~~~r~vl~L~~~~-g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME-GFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TTSCTTHHHHHTTTSSS-CCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45788888877776654 8999999999999999999999999888877
No 45
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=85.52 E-value=0.66 Score=36.28 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+|+.++-.+. + +-.|.++.++|..+|+|.+||...+.+....|-.
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777776665 3 5579999999999999999999999998888776
No 46
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=85.25 E-value=0.28 Score=36.22 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=26.1
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
...|..|.+|+.++...|+|.+||+|+-+.
T Consensus 52 a~lL~~G~SyreIa~~tG~StaTIsRv~r~ 81 (107)
T 3frw_A 52 AKMLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCccHHHHHHHHHH
Confidence 455889999999999999999999986554
No 47
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=85.04 E-value=0.56 Score=34.41 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 33 ERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 33 ~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+...+...-|++|.|..=-.+.++..+|..||...|||..-++++-..+.+
T Consensus 29 ~R~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 29 GKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3445677788999999888899999999999999999999999998887665
No 48
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=84.29 E-value=0.28 Score=36.99 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 45 LSCLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 45 ~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.-++..|..|.+|++++...|+|.+||+|+-+.
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345677899999999999999999999996553
No 49
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=83.70 E-value=0.61 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+..+.-.-..+++..|.++.++|..+|||+++|+|.+..
T Consensus 8 ~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 8 HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 4444444444455788999999999999999999998764
No 50
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.55 E-value=0.65 Score=31.14 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.++++-.|.--....+..+||..+|+|++||++.+.....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455544443223467889999999999999998876544
No 51
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=82.31 E-value=0.61 Score=32.49 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=26.2
Q ss_pred HHHHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 45 LSCLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 45 ~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
-.-|..+..|.++..||...|||++|++.+++.
T Consensus 23 ~~kLK~il~GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 23 RNALKDLLKDMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp HHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred HHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHcC
Confidence 334444444999999999999999999988763
No 52
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=82.09 E-value=0.32 Score=32.55 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.4
Q ss_pred cccccccccCCChhhHHhHHh
Q psy15697 56 PYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~ 76 (332)
+..++|...|||++||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 456889999999999999886
No 53
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=81.62 E-value=1.2 Score=32.57 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 12 LSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 12 ms~~~F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
++.+.+..+...++..- -+...+++..|. ..+.+..+++..+|+|++|+++.++....
T Consensus 8 ~~~~~~~~~~~~~~~l~---------~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 8 INTDTLERVTEIFKALG---------DYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp -CHHHHHHHHHHHHHTC---------SHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---------CHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555555555554311 112334444443 44568999999999999999999987764
No 54
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.57 E-value=0.57 Score=32.91 Aligned_cols=40 Identities=5% Similarity=0.042 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 39 SAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 39 ~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+...+++..|. ..|.+..+||..+|+|+++|.+.+.....
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55667776666 45689999999999999999988877644
No 55
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=81.49 E-value=1.5 Score=33.57 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=27.5
Q ss_pred CCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+- ++..|.. ..+.+..+|+..+|++++|+++.+++...
T Consensus 35 lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 35 LTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 544443 4444433 34789999999999999999999887654
No 56
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=81.29 E-value=1 Score=37.77 Aligned_cols=77 Identities=6% Similarity=-0.040 Sum_probs=48.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHhccCcCC---CCCCCCCCCHHHHHHHHHhhhccC--------CcccccccccCCChhhHH
Q psy15697 4 FAFKEAFRLSATQVEFILEEIAPALTT---PTERNVALSAKEKVLSCLHWMGVG--------SPYHIIGATHGPSKSSIC 72 (332)
Q Consensus 4 ~~f~~~frms~~~F~~L~~~L~~~~~~---~~~~~~~~~~~~~l~~~L~~L~~g--------~~~~~l~~~fgis~sTv~ 72 (332)
+.|...+.-.+.....+...+...+.. ........+++++++-+|..++.. .+..++|...|+|+.|++
T Consensus 125 ~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvs 204 (232)
T 1zyb_A 125 AFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNIS 204 (232)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHH
Confidence 445555554554444444443322110 111224467899999999887532 467789999999999999
Q ss_pred hHHhHhHH
Q psy15697 73 RSIHEVVP 80 (332)
Q Consensus 73 r~~~~v~~ 80 (332)
|+++++..
T Consensus 205 R~l~~l~~ 212 (232)
T 1zyb_A 205 KTLNELQD 212 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 57
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=81.10 E-value=0.62 Score=33.78 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=24.5
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+.+..+|+..+|+|++||++++.....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678899999999999999999887644
No 58
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=80.81 E-value=0.32 Score=40.95 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
..+|+.++-.+.|+++ .|.++.++|..+|+|.+||.+.+++....
T Consensus 197 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 197 EELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ----------------------------------------------
T ss_pred HhCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3478888888888776 58999999999999999999988876554
No 59
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.69 E-value=1.5 Score=33.69 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+- ++..|.. ..+.+..+++..++++++|+++.+++...
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4655544 3333333 33678899999999999999999888665
No 60
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=80.26 E-value=1.8 Score=33.79 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.....+.+..+||..++++++|+++++++...
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 44433 45555555555677789999999999999998887654
No 61
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.19 E-value=0.85 Score=31.55 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcc--CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGV--GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~--g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+.+++-+|.-.+. +.+..+||..+|+|++||.+.+.+...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556666666663 568899999999999999988877654
No 62
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=79.39 E-value=0.81 Score=32.77 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.9
Q ss_pred CcccccccccCCChhhHHhHHhHhHH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+..+|+..++++++|+++++++...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999999887654
No 63
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=78.70 E-value=1.5 Score=32.62 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=25.4
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+++..+|+|++|+++.++....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4789999999999999999999998776
No 64
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.59 E-value=1.8 Score=33.10 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=30.1
Q ss_pred CCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+- ++..|.. ..+.+..+|+..+|++++|+++.+++...
T Consensus 29 lt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 29 LNYNLFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp CCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 544443 3334433 34689999999999999999998887654
No 65
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=78.32 E-value=1.1 Score=36.68 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHhhhccC--CcccccccccCCChhhHHhHHhH
Q psy15697 35 NVALSAKEKVLSCLHWMGVG--SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g--~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+++|..++=.-.++.|..| ..+..+|..+|||++.|+|++.-
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 47799999999999999887 79999999999999999999874
No 66
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=78.08 E-value=0.86 Score=34.52 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=28.0
Q ss_pred HHHHHHHhhhccC-CcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWMGVG-SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L~~g-~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++..|.--... .+..+|+..+++|++||+|.+.....
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444433333 67889999999999999999887654
No 67
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.03 E-value=1.2 Score=30.81 Aligned_cols=27 Identities=11% Similarity=0.002 Sum_probs=21.4
Q ss_pred cCCcccccccccCCChhhHHhHHhHhH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
...+.++||..||+|.+||.+.+....
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345778999999999999888776543
No 68
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=77.88 E-value=0.69 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.4
Q ss_pred CcccccccccCCChhhHHhHH
Q psy15697 55 SPYHIIGATHGPSKSSICRSI 75 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~ 75 (332)
.++..+|..+|||++|||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999987
No 69
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=77.56 E-value=2.8 Score=31.94 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=30.7
Q ss_pred CCHH-HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|. ..+.+..+++..+|++++||++.+++...
T Consensus 35 l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 35 LSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp CCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4443 34444554 66779999999999999999998877654
No 70
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.33 E-value=2.9 Score=32.71 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=30.1
Q ss_pred CCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+- ++..|.. ..+.+..+|+..+|++++||++++++...
T Consensus 44 lt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 44 ISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp CCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 544443 3334433 34789999999999999999998887654
No 71
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=77.29 E-value=2.6 Score=39.28 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhh-hc--cCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 38 LSAKEKVLSCLHW-MG--VGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 38 ~~~~~~l~~~L~~-L~--~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
+|+.++-.+.|+| |. .+.++.++|..+|||..||..+..+....|-
T Consensus 361 L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6777788888888 44 5789999999999999999999999988887
No 72
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=77.28 E-value=0.94 Score=32.45 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=24.8
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
....+..+|+..+|+|++||++.++....
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55678899999999999999998887654
No 73
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=76.80 E-value=5.4 Score=30.28 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCCCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+++.+. ++..|. .++.+..+||..+|+|++||++.+++...
T Consensus 34 ~~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 34 VALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp SCCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45665543 333333 33489999999999999999998887654
No 74
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=76.73 E-value=2 Score=32.39 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=29.8
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.. ..+.+..+++..++++++|+++.+++...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 31 ISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 54443 34444432 34568999999999999999998887654
No 75
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=76.34 E-value=2.2 Score=32.31 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCH-HHHHHHHHhhhc-cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMG-VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~-~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++ +..++..|..-. .+.+..+|+..++++++|+++.+++...
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 443 344444554433 3678999999999999999998887654
No 76
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.09 E-value=2.6 Score=32.09 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+..++..|..-..+.+..+|+..+|++++||++.+++...
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 3445455533455679999999999999999998877654
No 77
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.07 E-value=1.7 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHhHhH
Q psy15697 41 KEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 41 ~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+.+++-.|.-.+ ...+..+||..+|+|++||.+.+.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455655555444 245778999999999999888776654
No 78
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=76.02 E-value=1.4 Score=32.13 Aligned_cols=42 Identities=12% Similarity=-0.070 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
.....++.++......+.++.+.+..|+||.+++.++...+-
T Consensus 34 Wva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 34 WVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444569999999999999999999999999999988877653
No 79
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=75.78 E-value=0.45 Score=32.02 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=19.6
Q ss_pred CcccccccccCCChhhHHhHHh
Q psy15697 55 SPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~ 76 (332)
.+..+||...|||++||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4678999999999999999886
No 80
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=75.75 E-value=2.4 Score=32.80 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=30.3
Q ss_pred CCCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+- ++..|+. ..+.+..+|+..++++++||++++++...
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3555443 3333332 34578899999999999999998887654
No 81
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=75.61 E-value=1.8 Score=40.47 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHhh-hc--cCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 37 ALSAKEKVLSCLHW-MG--VGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 37 ~~~~~~~l~~~L~~-L~--~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
.+++.++-.+.|+| |. .+.++..||..+|||..||..+.++.+..|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37788888888888 43 6789999999999999999999999888876
No 82
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.46 E-value=2.1 Score=32.83 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+ .++..|..-..+.+..+++..+|++++||++.+++...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 344433 33333333144679999999999999999998877654
No 83
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=75.33 E-value=1.1 Score=34.43 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhh-ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 40 AKEKVLSCLHWM-GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 40 ~~~~l~~~L~~L-~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...+++..| ++ ..+.+..+|+..+|++++|++++++....
T Consensus 27 ~~~~il~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 27 SVGAVYAIL-YLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344555566 44 45678999999999999999998877654
No 84
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=75.26 E-value=3.5 Score=31.15 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=31.0
Q ss_pred CCHH-HHHHHHHhhhcc-CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWMGV-GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~~-g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|+.-.. +.+..+++..++++++|+++.+++...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 4443 344555554432 679999999999999999998877654
No 85
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=75.08 E-value=1.1 Score=34.79 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHhhhccCCcccccccccCC-ChhhHHhHHhH
Q psy15697 33 ERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGP-SKSSICRSIHE 77 (332)
Q Consensus 33 ~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgi-s~sTv~r~~~~ 77 (332)
+|...++++. .--.+.+++.|.+.+.++..+|| |.+|+++++.+
T Consensus 8 GRPtk~t~e~-~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 8 GRPSDYMPEV-ADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp --CCSCCTTH-HHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCHHH-HHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3444455443 33467778999999999999999 99999999986
No 86
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=74.96 E-value=1.1 Score=32.22 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.7
Q ss_pred cCCcccccccccCCChhhHHhHHhHh
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
.+.+..++|..+|||.+||++.++.-
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 34788899999999999999999863
No 87
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=74.69 E-value=2.7 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhccCCccccc----ccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGVGSPYHII----GATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~g~~~~~l----~~~fgis~sTv~r~~~~v~~ 80 (332)
+..++..|.. ..+.+..+| +..++++++|+++.+++...
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444432 245678888 99999999999999888765
No 88
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=74.59 E-value=2.2 Score=29.45 Aligned_cols=27 Identities=7% Similarity=-0.073 Sum_probs=23.3
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+..++|..+|+|++||++.+.....
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999998887654
No 89
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.57 E-value=1.9 Score=37.12 Aligned_cols=47 Identities=21% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
..+|+.++-.+.|. ..|.++.++|...|+|.+||...+++....|-.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46899999888885 499999999999999999999999887766543
No 90
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=74.45 E-value=1.5 Score=33.56 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHhhh---ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWM---GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L---~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++..|+.+ ..+.+..++|..+|+|++||++.+++...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3444555554 24568899999999999999999887654
No 91
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=74.31 E-value=1 Score=29.67 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.6
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
...| ++..+|..+|+|++|++++++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 3456 899999999999999999883
No 92
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=73.83 E-value=1.6 Score=31.03 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=24.1
Q ss_pred CCcccccccccCCChhh-HHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSS-ICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sT-v~r~~~~v~~ 80 (332)
+.+..+++..++++++| +++.+++...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57999999999999999 9999987654
No 93
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=73.32 E-value=1.8 Score=29.19 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhhhccC-CcccccccccCCChhhHHhHHhH
Q psy15697 39 SAKEKVLSCLHWMGVG-SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 39 ~~~~~l~~~L~~L~~g-~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
--++.|..++.-+..| ++....|..|||..+|+..-++.
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 4578888999999999 89999999999999999766654
No 94
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=73.30 E-value=1.6 Score=33.39 Aligned_cols=28 Identities=4% Similarity=-0.031 Sum_probs=24.0
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+|+..++++++|+++++++...
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4568899999999999999998887654
No 95
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=73.26 E-value=3.4 Score=32.70 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+ .++..|.....+.+..+|+..++++++||++.+++...
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 355443 34444444345678999999999999999998877654
No 96
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=73.10 E-value=2.5 Score=30.22 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 34 RNVALSAKEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 34 ~~~~~~~~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
....+++++.+.+.+-+-+ .|..+++|+...+++++|+.+++.+...
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455766665544444432 2789999999999999999999887643
No 97
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=73.09 E-value=1.7 Score=35.65 Aligned_cols=43 Identities=19% Similarity=0.083 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhhhcc-------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV-------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~-------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++-+|..+.. ..+..++|...|+|+.|++|+++++.+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5788999999988775 567889999999999999999987754
No 98
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=72.71 E-value=2.4 Score=32.32 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+- ++..|.. ..+.+..+|+..++++++|+++.+++...
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 4555443 3333333 35779999999999999999998887654
No 99
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=72.66 E-value=2.3 Score=32.87 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=30.2
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.. ..+.+..+|+..++++++||++++++...
T Consensus 39 lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 39 ITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp CCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444 33333332 35678999999999999999998887755
No 100
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=72.64 E-value=1.9 Score=33.23 Aligned_cols=43 Identities=23% Similarity=0.137 Sum_probs=30.1
Q ss_pred CCH-HHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++ +..++..|..-..+.+..+|+..++++++|+++.+++...
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 444 3334444443334569999999999999999998877543
No 101
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=72.57 E-value=2.9 Score=35.23 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
...+++.++-.+.| ++.|.++.++|...|+|.+||...+.+....|.
T Consensus 171 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34588888866544 579999999999999999999999988776654
No 102
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=72.02 E-value=1.6 Score=32.06 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 43 KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 43 ~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
+++..|. ..+.+..+|+..+|+|++||++.++....+
T Consensus 29 ~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 29 QILDLLA--QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4444443 345688899999999999999999887653
No 103
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=72.01 E-value=2.2 Score=34.73 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHh
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+..++|-++...+...+..|.+...+|..+|+|+++|++++.
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 466888888888888888899999999999999999988765
No 104
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=71.83 E-value=2.7 Score=41.11 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHhhhc---cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWMG---VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~---~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+|+.++-.+.|+|+- .|.++..+|..+|||.+||..+.++.+..|-.
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 4899999989888872 68899999999999999999999887665544
No 105
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=71.47 E-value=2.6 Score=35.61 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
...+++.++-.+.| ++.|.++.++|...|||.+||...+.+...-|.
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 35588888776544 679999999999999999999999988776654
No 106
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=71.43 E-value=4.8 Score=30.76 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=30.8
Q ss_pred CCCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+ .++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 455543 34444443 34679999999999999999998877654
No 107
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=71.21 E-value=2.1 Score=32.62 Aligned_cols=28 Identities=0% Similarity=-0.051 Sum_probs=23.7
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+++..++++++||++.+++...
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3568899999999999999998877654
No 108
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=71.00 E-value=2.7 Score=30.16 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=28.2
Q ss_pred HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++..|.. ..+.+..+++..+|+|++||++.++....
T Consensus 23 ~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 23 VRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444432 34678899999999999999999887654
No 109
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=70.86 E-value=4.9 Score=30.18 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.. ..+.+..+++..+|++++||++.+++...
T Consensus 27 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 27 LTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp CCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 34444433 45678999999999999999998877654
No 110
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=70.84 E-value=3.6 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCHHH-HHHHHHhhhcc-CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGV-GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~-g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
++..+ .++..|..-.. +.+..+|+..++++++|+++++++...
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44433 34444443333 368899999999999999999887654
No 111
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=70.12 E-value=14 Score=27.22 Aligned_cols=56 Identities=7% Similarity=0.136 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 11 RLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 11 rms~~~F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
.|+.+.|.-|++. .++..+.-+...=.||-.|.+...++..+||+++-.++.++++
T Consensus 29 ~vsee~F~LLlel------------S~IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL 84 (111)
T 3m8j_A 29 SMSEEQFFLLIGI------------SSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRL 84 (111)
T ss_dssp CSCHHHHHHHHHH------------SCCCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH------------CCCCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 4677778777775 2344455555556688899999999999999999988887754
No 112
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=70.04 E-value=9.2 Score=28.07 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=44.5
Q ss_pred ChhHHHHHhcCCHHHHHHHHHHhccC--cC-C-CCC-CCCCCCHHHHHHHHHhhhcc--CCccccccccc---C------
Q psy15697 2 TPFAFKEAFRLSATQVEFILEEIAPA--LT-T-PTE-RNVALSAKEKVLSCLHWMGV--GSPYHIIGATH---G------ 65 (332)
Q Consensus 2 ~d~~f~~~frms~~~F~~L~~~L~~~--~~-~-~~~-~~~~~~~~~~l~~~L~~L~~--g~~~~~l~~~f---g------ 65 (332)
+-.+.-+.|++++.++...+...... .. . ..+ +...++++..- ..+.++.. ..+...++..+ |
T Consensus 35 s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~-~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~ 113 (128)
T 1pdn_C 35 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIEN-RIEEYKRSSPGMFSWEIREKLIREGVCDRST 113 (128)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHH-HHHHTTTTCTTCCHHHHHHHHHHTSSSCSTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHH-HHHHHHHhCcchHHHHHHHHHHHcCCccccC
Confidence 33456678999999998888765432 11 1 112 33445554332 23344443 35677777777 6
Q ss_pred -CChhhHHhHHhH
Q psy15697 66 -PSKSSICRSIHE 77 (332)
Q Consensus 66 -is~sTv~r~~~~ 77 (332)
+|.+||++++++
T Consensus 114 ~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 114 APSVSAISRLVRG 126 (128)
T ss_dssp CCCHHHHHHHC--
T ss_pred CcCHHHHHHHHHh
Confidence 599999998865
No 113
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=69.49 E-value=2.7 Score=33.25 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhhhcc--------CCcccccccccCCChhhHHhHHhH
Q psy15697 36 VALSAKEKVLSCLHWMGV--------GSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~--------g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..++.+.+..+.+..... +.+...+|...|||++|++++.+.
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 346777777665432221 678999999999999999999883
No 114
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=69.43 E-value=1.7 Score=30.81 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+.+..+++..+|+|++|+++.++....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468889999999999999999887653
No 115
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=69.35 E-value=2.4 Score=34.44 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHhhhccC-------------CcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGVG-------------SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++.+|..++.. .+..++|...|+|+.|++|+++++..
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57889999998887642 35678999999999999999987654
No 116
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=69.34 E-value=2.3 Score=32.60 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=24.3
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+||..+|+|++||++.+++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999887654
No 117
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=69.14 E-value=12 Score=28.71 Aligned_cols=77 Identities=21% Similarity=0.101 Sum_probs=45.5
Q ss_pred hhHHHHHhcCCHHHHHHHHHHhccC--cC-C-CCCC-CCCCCHHHHHHHHHhhhcc--CCccccccccc--------C--
Q psy15697 3 PFAFKEAFRLSATQVEFILEEIAPA--LT-T-PTER-NVALSAKEKVLSCLHWMGV--GSPYHIIGATH--------G-- 65 (332)
Q Consensus 3 d~~f~~~frms~~~F~~L~~~L~~~--~~-~-~~~~-~~~~~~~~~l~~~L~~L~~--g~~~~~l~~~f--------g-- 65 (332)
-.+.-+.+++++.++...+...... +. . ..++ ...++.+..- ..+.++.. ..+...++..+ |
T Consensus 51 ~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~-~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~ 129 (149)
T 1k78_A 51 PCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVE-KIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV 129 (149)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHH-HHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHH-HHHHHHHhCcchhHHHHHHHHHHhcccccCCC
Confidence 3456678999999999888765432 11 1 1222 3446654332 23344433 35666676655 5
Q ss_pred CChhhHHhHHhHhHH
Q psy15697 66 PSKSSICRSIHEVVP 80 (332)
Q Consensus 66 is~sTv~r~~~~v~~ 80 (332)
+|.+||++++++...
T Consensus 130 ~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 130 PSVSSINRIIRTKVQ 144 (149)
T ss_dssp CCHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHhc
Confidence 899999999886543
No 118
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=69.12 E-value=3 Score=31.10 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=24.1
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
....+..+++..+|+|++|+++.++....
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34568889999999999999999887543
No 119
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=69.03 E-value=2.3 Score=31.19 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++..| -..+.+..+|+..+|+|++|+++.++....
T Consensus 24 ~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 24 WEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444 244578899999999999999999887643
No 120
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=68.91 E-value=2.8 Score=31.52 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=30.4
Q ss_pred CCHHH-HHHHHHhhhc-cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMG-VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~-~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|+.-. .+.+..+|+..++++++|+++.+++...
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54433 4444454321 4578899999999999999998887654
No 121
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=68.86 E-value=3.9 Score=30.73 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=25.6
Q ss_pred hhcc-CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 50 WMGV-GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 50 ~L~~-g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.|.. +.+..+++..+|+|++|+++.++....
T Consensus 54 ~L~~~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 54 LLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp HHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3344 568899999999999999999988766
No 122
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=68.77 E-value=2.8 Score=35.55 Aligned_cols=46 Identities=26% Similarity=0.421 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHH
Q psy15697 35 NVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVI 82 (332)
Q Consensus 35 ~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l 82 (332)
...+++.++-.+ .+++.|.+..++|...|||..||...+.+...-|
T Consensus 173 ~~~Lt~re~~vl--~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEML--KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHH--HHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH--HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 356888777644 4468999999999999999999999998876654
No 123
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=68.27 E-value=1.9 Score=30.19 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHhhhccCCcccccccccCCChhhHHhHHhHhH
Q psy15697 45 LSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 45 ~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
...|..|+. ..+..+|+..||++||+||+-+.++
T Consensus 16 s~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~ 49 (83)
T 1zs4_A 16 SALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWI 49 (83)
T ss_dssp HHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTH
T ss_pred HHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHH
Confidence 344555553 5678899999999999999766553
No 124
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=68.20 E-value=4.6 Score=31.79 Aligned_cols=43 Identities=23% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCHH-HHHHHHHhhh-ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWM-GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L-~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|+.. ..+.+..+|+..++++++||++++++...
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4443 3444455444 25789999999999999999998887654
No 125
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=68.19 E-value=3.5 Score=30.13 Aligned_cols=27 Identities=4% Similarity=-0.034 Sum_probs=23.2
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+..+||..+|+|++||++.+.....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468889999999999999998887654
No 126
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.94 E-value=4 Score=31.00 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=27.6
Q ss_pred HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 43 KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 43 ~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.++..|.. ..+.+..+++..+++|++||++.+.+...
T Consensus 33 ~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 33 LYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 34444433 34578999999999999999998887654
No 127
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=67.88 E-value=1.6 Score=29.79 Aligned_cols=26 Identities=4% Similarity=0.142 Sum_probs=23.3
Q ss_pred ccCCcccccccccCCChhhHHhHHhH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..|.++..||...|||++|++++...
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 67899999999999999999987654
No 128
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=67.76 E-value=2.8 Score=33.99 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhhhcc-------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV-------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~-------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++-+|..|+. ..+..++|...|+|+.|++|+++++..
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5688899888877654 245678899999999999999988654
No 129
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=67.68 E-value=2.1 Score=35.26 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHhhhcc--------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV--------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++.+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4688899988887753 457788999999999999999998753
No 130
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=67.41 E-value=1.7 Score=29.50 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=18.9
Q ss_pred ccccccccCCChhhHHhHHhH
Q psy15697 57 YHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 57 ~~~l~~~fgis~sTv~r~~~~ 77 (332)
+..||..+|||++||+++++.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 778999999999999999763
No 131
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=67.37 E-value=3.6 Score=31.02 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=30.7
Q ss_pred CCCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+ .++..|.. ..+.+..+++..+|++++|+++.+++...
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355544 34444433 34679999999999999999998877654
No 132
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=67.11 E-value=3.6 Score=31.80 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=23.9
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+|+..+|++++||++.+++...
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4568999999999999999998877654
No 133
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=67.01 E-value=12 Score=33.14 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=84.0
Q ss_pred HHHHhc---CCHHHHHHHHHHhccCc---C--CCCCCCCCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 6 FKEAFR---LSATQVEFILEEIAPAL---T--TPTERNVALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 6 f~~~fr---ms~~~F~~L~~~L~~~~---~--~~~~~~~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.+.|+ +++.++...+.....-. . ..+++...++. ++|.-.+ --....+.+.++..++||.+||++++++
T Consensus 32 l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 32 LVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp HHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHHHH
Confidence 345677 99999999988765421 1 12333444554 3333222 2233457788999999999999999987
Q ss_pred hHHHHHHhhhccccCC-Ccc-c---ccchhhhhhh---cCCCCCceeeecceEEEEeCCCC--------Cc--ccccccC
Q psy15697 78 VVPVIVDTFFQRMVKW-PEE-N---LNDIPMTFLR---KGGFPNVAGCVDGTMVLIDAPNE--------HE--DQFVNRN 139 (332)
Q Consensus 78 v~~~l~~~l~~~~I~~-P~~-~---~~~~~~~f~~---~~~~p~~~G~iDgt~i~i~~P~~--------~~--~~y~~~k 139 (332)
. . +.. ....++.. -+. . .......... ...++.-+-.+|-+.+....+.. .. .......
T Consensus 110 ~-g-~~~-k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~ 186 (345)
T 3hot_A 110 M-G-KIQ-KVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNR 186 (345)
T ss_dssp T-T-CEE-EECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCT
T ss_pred h-C-Cee-eccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccceeeeccCCCCCCCCcCccC
Confidence 2 1 111 11111110 011 0 1111111111 12466677789999887642211 00 0111112
Q ss_pred CccccceeeeccCCcceEEeeccCCccccchhhh
Q psy15697 140 GDHALNVMAICGPNYKFYAVNANWPGSVHDARVM 173 (332)
Q Consensus 140 ~~~s~~~~~v~d~~g~~~~v~~~~~Gs~~D~~v~ 173 (332)
+...+.+.++.+..|.+.+......|++ ++..+
T Consensus 187 ~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~y 219 (345)
T 3hot_A 187 FGKKTMLCVWWDQSGVIYYELLKPGETV-NAARY 219 (345)
T ss_dssp TCCEEEEEEEEESSSEEEEEEECSSCCC-CHHHH
T ss_pred cCCcEEEEEEEcccCceeeEecCCCCcc-cHHHH
Confidence 3345667888888997666555422333 34444
No 134
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=66.93 E-value=6.2 Score=31.89 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCHHH-HHHHHHhhh-ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWM-GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L-~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|... ..+.+..+||..+|++++|+++++++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54443 344455444 35789999999999999999998877644
No 135
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=66.85 E-value=1.2 Score=36.58 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 43 KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 43 ~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
++--...++..|.+...+|..+|||.+|+++++..-
T Consensus 147 ~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 147 EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 344455667789999999999999999999988753
No 136
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=66.79 E-value=4.5 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=29.4
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.. ..+.+..+|+..+|++++|+++.+++...
T Consensus 38 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 38 VTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44443 34334433 34678899999999999999998877554
No 137
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=66.67 E-value=1.6 Score=36.36 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhhhcc----------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEKVLSCLHWMGV----------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~----------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...+++++++-+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 346789999999998853 234678999999999999999987643
No 138
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=66.50 E-value=1.5 Score=28.33 Aligned_cols=25 Identities=12% Similarity=-0.078 Sum_probs=22.6
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999876
No 139
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=66.37 E-value=3.6 Score=33.31 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHhhhcc-------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV-------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~-------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++|+-+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5688999998888753 246678999999999999999998753
No 140
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=66.09 E-value=1.9 Score=30.77 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=25.4
Q ss_pred hhhcc-CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 49 HWMGV-GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 49 ~~L~~-g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..|.. +.+..+|+..+|+|++|+++.++....
T Consensus 30 ~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 30 CMLHNQELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp HHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444 458899999999999999999887654
No 141
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=66.05 E-value=4.9 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=28.6
Q ss_pred HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++..|.. ..+.+..+||..++++++|+++++++...
T Consensus 53 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 53 FPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444433 35678999999999999999999887654
No 142
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=65.88 E-value=3.7 Score=33.87 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhhhccC-------------CcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGVG-------------SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++-+|..++.. .+..++|...|+|+.|++|+++++..
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57889999999888642 35778999999999999999987654
No 143
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=65.86 E-value=3.8 Score=31.43 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=25.4
Q ss_pred CCH-HHHHHHHHhhhc-cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMG-VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~-~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++ +..++..|..-. .+.+..+|+..++++++|+++++++...
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 444 334444554433 5789999999999999999999887654
No 144
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.64 E-value=3.3 Score=31.29 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 34 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 44433 34444433 34678999999999999999998877654
No 145
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=65.53 E-value=3.2 Score=33.43 Aligned_cols=44 Identities=7% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhhhcc-------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEKVLSCLHWMGV-------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~-------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+++++|+.+|..|+. ..+..++|...|+|+.|++|+++++..
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35789999999888763 245678999999999999999998754
No 146
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=65.52 E-value=4.4 Score=30.48 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=29.8
Q ss_pred CCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+- ++..|+. ..+.+..+++..+|++++|+++++++...
T Consensus 32 lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 32 ITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555443 3334432 34678999999999999999998877654
No 147
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=65.26 E-value=3.2 Score=28.54 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=23.0
Q ss_pred CCccccccccc-----CCChhhHHhHHhHhHHH
Q psy15697 54 GSPYHIIGATH-----GPSKSSICRSIHEVVPV 81 (332)
Q Consensus 54 g~~~~~l~~~f-----gis~sTv~r~~~~v~~~ 81 (332)
..+..+|+..+ ++|.+||+|.+......
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 46777888888 99999999998876653
No 148
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=65.11 E-value=3.9 Score=31.03 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.. ..+.+..+++..++++++|+++.+++...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44433 34444443 34679999999999999999998877654
No 149
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=65.02 E-value=3 Score=32.20 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=29.6
Q ss_pred CCHHHH-HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEK-VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~-l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+. ++..|.. ..+.+..+++..+|++++||++.+++...
T Consensus 35 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 35 VTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444443 4444433 34578999999999999999998877654
No 150
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=65.00 E-value=1.9 Score=29.05 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=24.4
Q ss_pred hhccCCcccccccccCCChhhHHhHHhH
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+-..|.++.++|...|||++|++++-+-
T Consensus 20 R~~~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 20 RKKLSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4467999999999999999999998763
No 151
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=64.92 E-value=2.5 Score=30.45 Aligned_cols=28 Identities=4% Similarity=-0.008 Sum_probs=23.6
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...+..+++..+|+|++|+++.++....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468899999999999999998887654
No 152
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=64.68 E-value=2.2 Score=29.39 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=29.8
Q ss_pred CCH-HHHHHHHHhhhccCCcccccccccC----CChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMGVGSPYHIIGATHG----PSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~~g~~~~~l~~~fg----is~sTv~r~~~~v~~ 80 (332)
+++ +..++.+|+- ..+.+..+|+..++ ++.+||++++++...
T Consensus 7 lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 7 ISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp CCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 444 4445556655 44678888998886 789999998887654
No 153
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=64.66 E-value=1.7 Score=28.58 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=22.4
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|||++|++++.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688999999999999999999875
No 154
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=64.63 E-value=3.2 Score=34.24 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHhhhcc--------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV--------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++|+-+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4678899988887762 246678999999999999999998753
No 155
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=64.61 E-value=2.3 Score=29.39 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=23.2
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
-..|.++.++|...|+|++|++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999999986
No 156
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=64.57 E-value=2.7 Score=31.30 Aligned_cols=29 Identities=10% Similarity=0.018 Sum_probs=24.0
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
....+..+|+..+|+|++||++.++....
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34568889999999999999999887654
No 157
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=64.43 E-value=7.5 Score=30.04 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCHH-HHHHHHHhhhc----cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWMG----VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~----~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|.... .+.+..+||..++++++|+++++++...
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4443 34444454432 2368899999999999999999988653
No 158
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=64.40 E-value=1.8 Score=29.65 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.8
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|||++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3688999999999999999999977
No 159
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=64.40 E-value=1.8 Score=28.34 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.8
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
-..|.++.++|...|+|++|++++.+
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999999875
No 160
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=64.25 E-value=4.2 Score=31.44 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=30.5
Q ss_pred CCCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+ .++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 41 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355443 34444433 33679999999999999999998877655
No 161
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=64.13 E-value=4.2 Score=30.68 Aligned_cols=28 Identities=4% Similarity=-0.003 Sum_probs=24.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+++..+++|++||++.+++...
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998877654
No 162
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=64.05 E-value=4.9 Score=30.92 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|+. ..+.+..+|+..++++++|+++++++...
T Consensus 39 lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 39 LTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 34444443 34578999999999999999998877654
No 163
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=63.77 E-value=4.1 Score=31.03 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=31.2
Q ss_pred CCCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 37 ALSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
.+++.+ .++..|+. ..+.+..+++..++++++||++.+++....
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 355544 34444433 336788999999999999999988877654
No 164
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=63.65 E-value=2.9 Score=32.83 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=24.8
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
....+..+|+..+|+|++||++.++....+
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445688999999999999999998876543
No 165
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=63.45 E-value=0.7 Score=30.26 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=19.6
Q ss_pred CCcccccccccCCChhhHHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSI 75 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~ 75 (332)
+.++..+|..+|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4588899999999999999985
No 166
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=63.42 E-value=4.5 Score=33.95 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhhhcc--------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV--------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++|+-+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 5788999988887742 346789999999999999999987654
No 167
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=63.42 E-value=2.6 Score=32.78 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=31.2
Q ss_pred CCHH-HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|..-..+.+..+|+..+|++++|+++.+++...
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4443 344444433345778999999999999999998887655
No 168
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=63.31 E-value=2.2 Score=30.33 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.5
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
.+.+..+++..+|+|++|+++.+++....
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45788999999999999999998876553
No 169
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=63.27 E-value=2.7 Score=32.41 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCH-HHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++ +..++..| -..+.+..+||..+|++++||++.+++...
T Consensus 36 lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 36 ISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp CCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444 33444455 456779999999999999999998887654
No 170
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=63.23 E-value=2.1 Score=32.17 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=24.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+++..+|+|++|+++.++....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568899999999999999999987654
No 171
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=63.15 E-value=2.3 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=25.3
Q ss_pred hhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 49 HWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 49 ~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+...|.++.++|...|||++|++++.+-
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45567899999999999999999998764
No 172
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=63.13 E-value=5.2 Score=31.08 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCHH-HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|.. ..+.+..+|+..+|++++||++.+++...
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4443 334444443 45678889999999999999998877654
No 173
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=63.08 E-value=1.9 Score=28.77 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.4
Q ss_pred ccCCcccccccccCCChhhHHhHHhH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..|.++.++|...|||++|++++.+.
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 56889999999999999999998873
No 174
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=62.83 E-value=4.3 Score=33.36 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhhhcc-----------CCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 38 LSAKEKVLSCLHWMGV-----------GSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~-----------g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
.+++++++-+|..+.. ..+..++|...|+|+.|++|+++++...
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4678888887766543 2467789999999999999999887653
No 175
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=62.72 E-value=4 Score=31.82 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|+. ..+.+..+|+..+|++++||++.+++...
T Consensus 50 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 50 LSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 54443 34334432 34678999999999999999998877654
No 176
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=62.62 E-value=6.5 Score=30.48 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.8
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
...++.++|+.+|+|++|+++.+++....
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35789999999999999999998887543
No 177
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=62.51 E-value=6.4 Score=29.98 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhh------hccCC---cccccccccCCChhhHHhHHhHh
Q psy15697 36 VALSAKEKVLSCLHW------MGVGS---PYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~------L~~g~---~~~~l~~~fgis~sTv~r~~~~v 78 (332)
..+|..+|+.-.|.. |.-|. +-+.||..||||++||.+.+...
T Consensus 11 s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 456666666555543 44554 34678999999999998766543
No 178
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=62.51 E-value=1.8 Score=29.53 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred cCCcccccccccCCChhhHHhHHhH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.| ++.++|...|||++|++++.+.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 46 8999999999999999998763
No 179
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=62.33 E-value=4.5 Score=35.86 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=28.0
Q ss_pred HHHhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 46 SCLHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 46 ~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
+...|+..+.++.+||..||||++||+|-+.+.
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455566678999999999999999999998864
No 180
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=62.27 E-value=3.7 Score=26.49 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.7
Q ss_pred CCccccccccc-----CCChhhHHhHHh
Q psy15697 54 GSPYHIIGATH-----GPSKSSICRSIH 76 (332)
Q Consensus 54 g~~~~~l~~~f-----gis~sTv~r~~~ 76 (332)
..+..+++..+ +||.+||+|.++
T Consensus 19 ~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 35667788888 999999999998
No 181
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=62.20 E-value=3.6 Score=35.06 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcc---CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 40 AKEKVLSCLHWMGV---GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 40 ~~~~l~~~L~~L~~---g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.-++.+-.|..|+. +.+..+|++.+|+++||++|+++....
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445555666653 468899999999999999999997654
No 182
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=62.04 E-value=4.3 Score=34.16 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhc-cCCcc--cccccccCCChhhHHhHHhHhH
Q psy15697 40 AKEKVLSCLHWMG-VGSPY--HIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 40 ~~~~l~~~L~~L~-~g~~~--~~l~~~fgis~sTv~r~~~~v~ 79 (332)
..+.++-+|+.|. .|.+. .+||..+++|++|+++.+++..
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le 49 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRME 49 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566777888775 36667 8999999999999999998764
No 183
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=61.92 E-value=2.5 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.7
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4688999999999999999999876
No 184
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=61.91 E-value=5.6 Score=30.62 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=24.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...++.++|..+|+|++||++.+++...
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999999887654
No 185
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=61.60 E-value=3.9 Score=29.79 Aligned_cols=28 Identities=4% Similarity=-0.007 Sum_probs=23.9
Q ss_pred cCCccccccccc-CCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATH-GPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~f-gis~sTv~r~~~~v~~ 80 (332)
.+.++.+|+..+ |+|++|+++.+++...
T Consensus 26 ~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 26 GKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp CCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 447899999999 9999999998887654
No 186
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=61.10 E-value=2.1 Score=31.27 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHh
Q psy15697 40 AKEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 40 ~~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..+.+.-.|+.++ .|.++.++|...|||++|++++-+
T Consensus 33 l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 33 LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 3455666665554 789999999999999999999875
No 187
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=60.50 E-value=6 Score=30.61 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=24.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...++.+||..+|+|++|+++.+++...
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999999887654
No 188
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=60.37 E-value=6 Score=30.04 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=22.5
Q ss_pred cccccccccCCChhhHHhHHhHhHH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+..+++..+|++++|+++.+++...
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 8999999999999999998887655
No 189
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=60.32 E-value=3.6 Score=33.56 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhhhc-------cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMG-------VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~-------~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++-+|..++ ...+..++|...|+|+.|++|+++++..
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 189 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAE 189 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467888988887664 2246788999999999999999988754
No 190
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=60.24 E-value=7.2 Score=31.10 Aligned_cols=44 Identities=20% Similarity=0.071 Sum_probs=32.1
Q ss_pred CCH-HHHHHHHHhhhcc--CCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 38 LSA-KEKVLSCLHWMGV--GSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~~--g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
+++ +..++..|+.-.. +.+..+|+..++++++||++.+++....
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 444 4445555554443 3799999999999999999998877653
No 191
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=59.99 E-value=3.1 Score=28.96 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=26.5
Q ss_pred HHHHHhhh--ccCCcccccccccCCChhhHHhHHh
Q psy15697 44 VLSCLHWM--GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 44 l~~~L~~L--~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+.-.|..+ ..|.++.++|...|+|++|++++-+
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 44444444 4789999999999999999999876
No 192
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=59.89 E-value=2.2 Score=27.70 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.4
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4688999999999999999999876
No 193
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=59.79 E-value=2.7 Score=28.25 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=22.9
Q ss_pred ccCCcccccccccCCChhhHHhHHhH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..|.++.++|...|+|++|++++.+.
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46889999999999999999998763
No 194
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=59.75 E-value=2 Score=29.03 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=23.1
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
...|.++.++|...|||++|++++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34688999999999999999999886
No 195
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=59.53 E-value=6 Score=30.12 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=24.3
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...++.++|..+|+|++|+++.+++...
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999999888764
No 196
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=59.47 E-value=5 Score=33.91 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHh
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..+++.++...+...+..|.+...+|..+|+|+++|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56778777777666668899999999999999999988775
No 197
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=59.28 E-value=7.5 Score=30.06 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.2
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...++.+||..+|+|++|+++.+++...
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999887754
No 198
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=59.10 E-value=5.8 Score=34.21 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
..+++.++-.+.| ++.|.+..++|...|||..||...+.+...-|.
T Consensus 196 ~~Lt~re~~vl~~--~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHW--MSRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688877765544 479999999999999999999999988876554
No 199
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=58.98 E-value=6.5 Score=30.37 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.6
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.++|..+|+|++|+++.+++...
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468899999999999999999887654
No 200
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=58.94 E-value=4.8 Score=33.85 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhhhc--------------cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEKVLSCLHWMG--------------VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~--------------~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+++++++-+|..++ ...+..++|...|+|+.|++|+++++..
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~ 203 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKR 203 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3578999999987764 2347778999999999999999987654
No 201
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=58.82 E-value=3.1 Score=27.54 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=22.5
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3688999999999999999999876
No 202
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=58.77 E-value=3.3 Score=28.60 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=22.8
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|||++|++++.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688999999999999999999987
No 203
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=58.74 E-value=4.6 Score=34.36 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhhhccC-------------CcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGVG-------------SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++|+-+|..|+.. .+..++|...|+|+.|++|+++++..
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57888998888877642 35678999999999999999987654
No 204
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=58.71 E-value=5.4 Score=31.41 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|.. ..+.+..+|+..+|++++||++.+++...
T Consensus 43 lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 43 ITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 54433 34444443 34678999999999999999998877654
No 205
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.57 E-value=7.5 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=24.8
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
...++.++|..+|+|++|+++.+++....
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35789999999999999999998887553
No 206
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=58.26 E-value=3.4 Score=29.92 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=22.8
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHhHh
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
|..|+ +..++.+|...||+.||+||+-+..
T Consensus 18 l~~la-~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 18 LNKIA-MLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHH-HHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHH-HHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 44444 4577899999999999999965544
No 207
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=58.13 E-value=2.6 Score=28.13 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.6
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999876
No 208
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=58.08 E-value=3.1 Score=30.88 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=30.7
Q ss_pred CCH-HHHHHHHHhhhccCCcccccccccC----CChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMGVGSPYHIIGATHG----PSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~~g~~~~~l~~~fg----is~sTv~r~~~~v~~ 80 (332)
+++ +..++.+|+. ..+.+..+|+..++ ++++||++++++...
T Consensus 8 lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 8 ISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 444 3345555554 45678899999998 889999999888765
No 209
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=58.04 E-value=6 Score=32.53 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHhhhc--------------cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMG--------------VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~--------------~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.++.++++-+|..++ ...+..++|...|+|+.|++|+++++..
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 147 TDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 578899998888764 2356778999999999999999998653
No 210
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=57.20 E-value=4.8 Score=34.59 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHhhhc---cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEKVLSCLHWMG---VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~---~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.-++.+-.|..|+ .+.+..+|+..+|+++||++|+++....
T Consensus 17 ~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 17 AGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp -CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556667777788886 3578899999999999999999997654
No 211
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=56.88 E-value=3 Score=27.78 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.6
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999876
No 212
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=56.68 E-value=3.5 Score=28.12 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=26.5
Q ss_pred HHHHHhhh--ccCCcccccccccCCChhhHHhHHhH
Q psy15697 44 VLSCLHWM--GVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 44 l~~~L~~L--~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.-.|..+ ..|.++.++|...|||++|++++.+-
T Consensus 12 ~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 12 VSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 44344443 47899999999999999999998763
No 213
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=56.67 E-value=3.7 Score=28.97 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=22.2
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|||++|++++.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3578899999999999999999876
No 214
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=56.56 E-value=3.5 Score=29.12 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=24.4
Q ss_pred hhccCCcccccccccCCChhhHHhHHhH
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+-..|.++.++|...|||++|++++.+-
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3457899999999999999999998773
No 215
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=56.47 E-value=8 Score=30.36 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=23.7
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.++|..+|+|++||++.+.+...
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999999887654
No 216
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=56.40 E-value=5.2 Score=27.49 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=27.6
Q ss_pred HHHHHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 44 VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 44 l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.-.|..++...++.++|...|||++|++++.+.
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5556666666668899999999999999998763
No 217
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=56.03 E-value=5 Score=31.16 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=25.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
...++.+++..+|+|++|+++.+++....
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45799999999999999999999887653
No 218
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=56.01 E-value=5.1 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCHH-HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAK-EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++. ..++..|.. ..+.+..+|+..+|++++|+++.+++...
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4443 334444443 34778999999999999999998887654
No 219
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=56.00 E-value=3.1 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.8
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|||++|++++.+
T Consensus 25 ~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4689999999999999999999876
No 220
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=55.88 E-value=3.6 Score=29.54 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=25.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
.+.+..+++..+|+|++|+++.++....+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34688899999999999999999987666
No 221
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=55.80 E-value=1.6 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=19.3
Q ss_pred cccccccccCCChhhHHhHHh
Q psy15697 56 PYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~ 76 (332)
++..+|+.+||++++||+.++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 888999999999999999874
No 222
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=55.72 E-value=7.4 Score=29.44 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=30.5
Q ss_pred CCCHHH-HHHHHHhhhc----cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMG----VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~----~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.++..+ .|++.|..+. .+.+...||..+|+|.+||.+.++....
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344433 3555555542 2267889999999999999998887665
No 223
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=55.71 E-value=6.8 Score=33.50 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHhhhcc---CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEKVLSCLHWMGV---GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~---g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.++.-++.+-.|..|+. +.+..+|+..+|+++||++|+++....
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35555666667777763 568899999999999999999997654
No 224
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=55.46 E-value=7.2 Score=32.12 Aligned_cols=42 Identities=14% Similarity=-0.033 Sum_probs=30.9
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++..|+. ..+.+..+|+..++++++|+++++++...
T Consensus 46 Lt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 46 LNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp CCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544 34444443 34789999999999999999998887654
No 225
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=55.39 E-value=3.4 Score=31.34 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=24.1
Q ss_pred hhccCCcccccccccCCChhhHHhHHh
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+-..|.++.++|..+|+|++|++++-+
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 446799999999999999999999876
No 226
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=55.29 E-value=4.7 Score=34.19 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcc---CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGV---GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~---g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
-++.+-.|..|+. +.+..+|+..+|+++||++|+++....
T Consensus 5 l~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 5 IARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445555666653 467889999999999999999987654
No 227
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=55.28 E-value=3 Score=30.46 Aligned_cols=40 Identities=3% Similarity=-0.107 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHh
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
.+..|.+.|.-. .+-..|.++.++|...|||++|++++.+
T Consensus 10 ~~~~pG~~Lk~~-lr~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 10 RPIHPGEILAEE-LGFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCCHHHHHHHH-HHHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHH-HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345566555421 1335789999999999999999999988
No 228
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=55.22 E-value=5.5 Score=32.85 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=34.2
Q ss_pred CHH-HHHHHHHhhhcc-------------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 39 SAK-EKVLSCLHWMGV-------------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 39 ~~~-~~l~~~L~~L~~-------------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+.. ++++-+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 445 888888887763 357888999999999999999988754
No 229
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=55.11 E-value=3.7 Score=26.92 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=22.4
Q ss_pred ccCCcccccccccC--CChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHG--PSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fg--is~sTv~r~~~ 76 (332)
..|.++.++|...| +|++|++++.+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 46889999999999 99999999876
No 230
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=54.85 E-value=5.3 Score=30.45 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=27.0
Q ss_pred HHhhhccC-Cccccccccc-CCChhhHHhHHhHhHHH
Q psy15697 47 CLHWMGVG-SPYHIIGATH-GPSKSSICRSIHEVVPV 81 (332)
Q Consensus 47 ~L~~L~~g-~~~~~l~~~f-gis~sTv~r~~~~v~~~ 81 (332)
.|..|..| .++.+|+..+ |||++|+++.+++....
T Consensus 40 IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 40 ILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp HHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 34445444 6899999999 79999999998876653
No 231
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=54.53 E-value=2.6 Score=34.59 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=0.4
Q ss_pred CCHHHHHHHHHhhhcc-------CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGV-------GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~-------g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++.+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 141 ~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 141 KTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp C-------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567788887777662 457889999999999999999998753
No 232
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=54.35 E-value=3.5 Score=33.33 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=24.8
Q ss_pred hhhccCCcccccccccCCChhhHHhHHh
Q psy15697 49 HWMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 49 ~~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
.++..|.+...+|..+|+|.+|+++++.
T Consensus 153 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 153 NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4556899999999999999999999875
No 233
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=54.13 E-value=2.9 Score=29.27 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=23.4
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
...|.++.++|...|||++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34689999999999999999999987
No 234
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=54.11 E-value=5 Score=30.69 Aligned_cols=40 Identities=5% Similarity=0.043 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhccCCcccccccccC----CChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGVGSPYHIIGATHG----PSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~g~~~~~l~~~fg----is~sTv~r~~~~v~~ 80 (332)
+..++.+|+-...+.+..+|+..++ ++.+||++++++...
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 4445555555445678899999987 899999998887654
No 235
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=54.06 E-value=9.2 Score=30.51 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=29.5
Q ss_pred CCHHH-HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
++..+ +++-.|.. ....++.+||..+|+|++||++.+++...
T Consensus 15 ld~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 15 LDDLDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp CCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44443 34333332 33579999999999999999999887754
No 236
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=53.54 E-value=4.2 Score=27.67 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=22.6
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3688999999999999999999876
No 237
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=53.54 E-value=8.9 Score=31.55 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhc-------------cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMG-------------VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~-------------~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++++++.+|..|+ ...+..++|...|+|+.|++|+++++..
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 578899998885542 2346678999999999999999988643
No 238
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=53.52 E-value=3.2 Score=36.59 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.2
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+.++||+..|||.+||||+++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35678999999999999999984
No 239
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=53.11 E-value=11 Score=26.10 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=23.8
Q ss_pred hhccCCcccccccccCCChhhHHhHHh
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+...|.++.++|...|||++|++++.+
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999999887
No 240
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=52.99 E-value=5.1 Score=33.11 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=26.1
Q ss_pred HHhhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 47 CLHWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 47 ~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
...++..|.+...++..+|+|.+|+++++..
T Consensus 168 i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 168 VVEMLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 3445568999999999999999999998764
No 241
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=52.96 E-value=8.1 Score=26.59 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=22.2
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+..+|+..|+||..||.+-+.+...
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357788999999999999988776554
No 242
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=52.71 E-value=3.3 Score=36.66 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.3
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.++||+..|||.+||||+++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 3568999999999999999983
No 243
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=52.46 E-value=4.2 Score=29.06 Aligned_cols=26 Identities=4% Similarity=-0.169 Sum_probs=23.1
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
...|.++..+|...|||++|++++-+
T Consensus 40 ~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 40 RALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 34789999999999999999999865
No 244
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=51.89 E-value=3.3 Score=37.08 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.8
Q ss_pred CcccccccccCCChhhHHhHHh
Q psy15697 55 SPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~ 76 (332)
.+.++||...|||.+||||+++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 4567999999999999999997
No 245
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=51.86 E-value=10 Score=30.18 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.3
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...++.+||..+|+|++||++.+++...
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4579999999999999999999887654
No 246
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=51.84 E-value=3.1 Score=34.04 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 44 VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 44 l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
+--...++..|.+...+|..+|+|.+|+++++...-..
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 33344556789999999999999999999998865443
No 247
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=51.55 E-value=3.1 Score=36.84 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+.++||...|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999974
No 248
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=51.09 E-value=7.7 Score=28.43 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=25.0
Q ss_pred cCCccccccccc-CCChhhHHhHHhHhHHH
Q psy15697 53 VGSPYHIIGATH-GPSKSSICRSIHEVVPV 81 (332)
Q Consensus 53 ~g~~~~~l~~~f-gis~sTv~r~~~~v~~~ 81 (332)
.+.++.+|+..+ |++++|+++.+++....
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 567899999999 99999999998877653
No 249
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=50.91 E-value=13 Score=25.46 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhhhccCC--cccccccccCCChhhHHhHHhH
Q psy15697 39 SAKEKVLSCLHWMGVGS--PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 39 ~~~~~l~~~L~~L~~g~--~~~~l~~~fgis~sTv~r~~~~ 77 (332)
...+++.-++..|.-|. +...||..+|+++++|.|++..
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666677777665 5678999999999887766544
No 250
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=50.82 E-value=3.2 Score=36.59 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+.++||...|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999985
No 251
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=50.60 E-value=3.3 Score=36.52 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.++||..+|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5679999999999999999986
No 252
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=50.52 E-value=3.3 Score=33.20 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=0.4
Q ss_pred CCHHHHHHHHHhhhc---cCCcccccccccCCChhhHHhHHhHhH
Q psy15697 38 LSAKEKVLSCLHWMG---VGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~---~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
.+++++++-+|..+. ...+..++|...|+++.|++|++++.+
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp C--------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 345566666665543 346788999999999999999998764
No 253
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=50.47 E-value=6.6 Score=33.79 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHhhhcc---CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKEKVLSCLHWMGV---GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~---g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.++.-++.+-.|..|+. +.+..+|+..+|+++||++|++.....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45556667777888863 467889999999999999999997664
No 254
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=50.24 E-value=7.3 Score=32.66 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhc-cCCcc--cccccccCCChhhHHhHHhHhH
Q psy15697 41 KEKVLSCLHWMG-VGSPY--HIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 41 ~~~l~~~L~~L~-~g~~~--~~l~~~fgis~sTv~r~~~~v~ 79 (332)
.+.++.+|+.+. .|.+. .++|..++++++||++.+++..
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455667777774 35555 8999999999999999988754
No 255
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.16 E-value=3.5 Score=36.56 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.3
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+.++||..+|||.+||||+++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 45679999999999999999974
No 256
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=50.14 E-value=4.2 Score=28.63 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=23.6
Q ss_pred hccCCcccccccccCCChhhHHhHHhH
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
-..|.++.++|...|||++|++++.+.
T Consensus 18 ~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 18 DELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 345789999999999999999999873
No 257
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=50.08 E-value=8.2 Score=27.79 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhc-----cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMG-----VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~-----~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...++..|+..+ ...++..|+...++++||++|.+.+...
T Consensus 18 q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 18 IVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp HHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 344455566662 2368889999999999999998887654
No 258
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=50.03 E-value=5.6 Score=28.78 Aligned_cols=40 Identities=15% Similarity=-0.061 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhccCCcccccccccC----CChhhHHhHHhHhHH
Q psy15697 40 AKEKVLSCLHWMGVGSPYHIIGATHG----PSKSSICRSIHEVVP 80 (332)
Q Consensus 40 ~~~~l~~~L~~L~~g~~~~~l~~~fg----is~sTv~r~~~~v~~ 80 (332)
.+..++.+|+- ..+.+..+|++.++ ++.+||.+++.+...
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 35567777776 44788999998886 578999988887654
No 259
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=50.02 E-value=9.3 Score=32.56 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.8
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+..+||..+|+++||+++.++....
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999999988765
No 260
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=49.94 E-value=8.3 Score=29.85 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=23.8
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+.+...++..+|+|++||++.+.+...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4578899999999999999998887544
No 261
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=49.68 E-value=3.5 Score=36.79 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.++||..+|||.+||||+++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5789999999999999999985
No 262
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=49.54 E-value=4 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=23.9
Q ss_pred hccCCcccccccccCCChhhHHhHHhH
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
-..|.++.++|...|||++|++++.+.
T Consensus 28 ~~~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 28 DDLDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999999999873
No 263
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=49.44 E-value=6.6 Score=28.52 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=23.8
Q ss_pred ccCCccccccccc-CCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATH-GPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~f-gis~sTv~r~~~~v~~ 80 (332)
..+.++.+|+..+ |+|++|+++.+++...
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3447899999999 5999999998887654
No 264
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=49.39 E-value=3.5 Score=36.42 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.+++|...|||.+||||+++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 5679999999999999999985
No 265
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=49.31 E-value=3.5 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+.++||..+|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999984
No 266
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=49.01 E-value=3.6 Score=36.66 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+.++||...|||.+||||+++.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35779999999999999999985
No 267
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=48.97 E-value=4.5 Score=29.58 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=23.7
Q ss_pred hhccCCcccccccccCCChhhHHhHHh
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+-..|.++..+|...|||++|++++.+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999999886
No 268
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=48.94 E-value=6.1 Score=30.52 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=24.7
Q ss_pred hhccCCcccccccccCCChhhHHhHHhH
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+...|.++.++|...|||+++++++.+-
T Consensus 77 R~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 77 RMKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4567899999999999999999999873
No 269
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=48.80 E-value=7.3 Score=31.66 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 37 ALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
.+++.+. -.|.+|+.|.+...++...++|..||..++.++..-|.
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3566554 35677889999999999999999999999998877654
No 270
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=48.64 E-value=15 Score=26.87 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHh
Q psy15697 39 SAKEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 39 ~~~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
.....+.-.|..++ .|.++.++|...|||++|++++.+
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34455666665555 788999999999999999999876
No 271
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=47.91 E-value=10 Score=31.66 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=27.1
Q ss_pred HHHHHhhhc--cCCcccccccccCCChhhHHhHHhH
Q psy15697 44 VLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 44 l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.-.|..+. .|.++.++|..+|+|++|++++.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 444555544 5779999999999999999999875
No 272
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=47.86 E-value=3.9 Score=36.52 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=0.0
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.++||..+|||.+||||+++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 5679999999999999999974
No 273
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=47.75 E-value=12 Score=26.93 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=24.4
Q ss_pred hhccCCcccccccccCCChhhHHhHHhHhH
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
.+....+..++|..+|+|++++++.|++.+
T Consensus 17 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 17 HFSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp HTTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344556778899999999999999998763
No 274
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=47.32 E-value=6 Score=28.42 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHhH
Q psy15697 40 AKEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 40 ~~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
....+.-.|..++ .|.++.++|...|||++|++++.+-
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3445555555555 7899999999999999999998773
No 275
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=47.26 E-value=6.5 Score=28.88 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHh
Q psy15697 39 SAKEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 39 ~~~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
.....+.-.|..++ .|.++.++|...|||++|++++.+
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 45556666666555 689999999999999999999976
No 276
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=47.24 E-value=7.3 Score=33.42 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhcc---CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 40 AKEKVLSCLHWMGV---GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 40 ~~~~l~~~L~~L~~---g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.-++.+-.|..|+. +.+..+|+...|+++||++|++.....
T Consensus 4 sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~ 47 (260)
T 3r4k_A 4 TVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE 47 (260)
T ss_dssp HHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556666777764 357889999999999999999987654
No 277
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=46.92 E-value=11 Score=30.46 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=29.3
Q ss_pred HHHHHHHhhhc---cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWMG---VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L~---~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+..-.|..|. ...+..+||..||+|++||.+-+.....
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444555664 2368889999999999999999986654
No 278
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=46.85 E-value=4 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.2
Q ss_pred ccccccccCCChhhHHhHHhH
Q psy15697 57 YHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 57 ~~~l~~~fgis~sTv~r~~~~ 77 (332)
..++|..+|||.+|+.+++..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 456889999999999999876
No 279
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=46.59 E-value=5.8 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=23.1
Q ss_pred hhhccCC---cccccccccCCChhhHHhHHhHhH
Q psy15697 49 HWMGVGS---PYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 49 ~~L~~g~---~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
..|..|. +.++|+..||||++||.+.+....
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4444443 667899999999999998776643
No 280
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=46.38 E-value=6.2 Score=29.56 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=26.2
Q ss_pred HHHHHhhh--ccCCcccccccccCCChhhHHhHHh
Q psy15697 44 VLSCLHWM--GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 44 l~~~L~~L--~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+...|..+ ..|.++.++|...|||++|++++.+
T Consensus 41 lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 41 LAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44444444 4689999999999999999999876
No 281
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=46.36 E-value=8.6 Score=31.43 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=27.9
Q ss_pred HHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 42 EKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 42 ~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++..|. ....+..++|..+|+|++||++.+++...
T Consensus 23 ~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 23 RKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp HHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443 34578899999999999999998887644
No 282
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=46.23 E-value=12 Score=30.45 Aligned_cols=26 Identities=4% Similarity=-0.088 Sum_probs=21.7
Q ss_pred CCcccccccccCCChhhHHhHHhHhH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
..+.++||..+|+|++||++.++...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le 49 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALE 49 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 47899999999999998887776554
No 283
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=46.03 E-value=8.2 Score=33.57 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+|+..+-.+.|+++ .|.++.++|...|+|.+||...+.+....+..
T Consensus 112 Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~ 157 (286)
T 3n0r_A 112 IAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDA 157 (286)
T ss_dssp HSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhc
Confidence 67777877777776 48899999999999999999988888777766
No 284
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=45.98 E-value=6.4 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.6
Q ss_pred hccCCcccccccccCCChhhHHhHHhH
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
-..|.++..+|...|||++|++++.+.
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 356889999999999999999998874
No 285
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=45.91 E-value=11 Score=31.13 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHhhhc---cCCcccccccccCCChhhHHhHHhHhH
Q psy15697 43 KVLSCLHWMG---VGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 43 ~l~~~L~~L~---~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
..+-+++.|. .+.+..+||..+++|++||++.+++..
T Consensus 6 dYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 6 DYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 3344455543 346888999999999999999998753
No 286
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=45.62 E-value=12 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=26.8
Q ss_pred HHhhhccC-Cc--cccccccc-CCChhhHHhHHhHhHHH
Q psy15697 47 CLHWMGVG-SP--YHIIGATH-GPSKSSICRSIHEVVPV 81 (332)
Q Consensus 47 ~L~~L~~g-~~--~~~l~~~f-gis~sTv~r~~~~v~~~ 81 (332)
.|..|..| .+ +.+++..+ |+|++|+++.+++...+
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 34455555 45 89999999 99999999998876553
No 287
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=45.51 E-value=16 Score=30.78 Aligned_cols=28 Identities=4% Similarity=0.204 Sum_probs=23.9
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...+..+|+..+|+|++||++.++....
T Consensus 24 g~~s~~ELa~~lglS~stVs~hL~~Le~ 51 (232)
T 2qlz_A 24 MECYFSLLSSKVSVSSTAVAKHLKIMER 51 (232)
T ss_dssp TTTCSSSSCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578889999999999999999876654
No 288
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=45.32 E-value=6.1 Score=28.87 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=23.2
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
-..|.++.++|...|||++|++++.+
T Consensus 19 ~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34689999999999999999999876
No 289
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=45.30 E-value=5.9 Score=28.01 Aligned_cols=26 Identities=4% Similarity=-0.105 Sum_probs=23.1
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
-..|.++.++|...|||++|++++.+
T Consensus 14 ~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999999887
No 290
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=45.25 E-value=5.4 Score=26.30 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.2
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+..+++..+|+|++|+++.+++
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 3456788899999999998875
No 291
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=45.20 E-value=4.5 Score=29.16 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.2
Q ss_pred cccccccccCCChhhHHhHHhHh
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v 78 (332)
+.++|+..||||++||++.+...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 56688999999999999877654
No 292
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=45.15 E-value=10 Score=31.72 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=24.5
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+.++..+|..+++|++|+++.+++...
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999887
No 293
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=44.38 E-value=9.4 Score=31.71 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHhhhc--------------c-CCcccccccccCCCh-hhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMG--------------V-GSPYHIIGATHGPSK-SSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~--------------~-g~~~~~l~~~fgis~-sTv~r~~~~v~~ 80 (332)
.+++++|+-+|..|+ . ..+..++|...|+|+ .|++|+++++..
T Consensus 138 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp THHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 467888888887654 2 456778999999999 599999998754
No 294
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=44.22 E-value=8.6 Score=27.14 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=21.3
Q ss_pred CCcccccccccCCChhhHHhHHhHhH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
..+..+|+..|+||.+||.+-+.++.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35778899999999999988776644
No 295
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=44.09 E-value=17 Score=27.88 Aligned_cols=27 Identities=4% Similarity=-0.090 Sum_probs=22.8
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+.+...||..+|+|.++|.+++...+.
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457788999999999999988887665
No 296
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=44.07 E-value=7.7 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=24.0
Q ss_pred hhccCCcccccccccCCChhhHHhHHh
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+...|.++.++|...|||++|++++.+
T Consensus 32 R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 32 RTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345789999999999999999999987
No 297
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=43.48 E-value=8.2 Score=31.83 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHH
Q psy15697 36 VALSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVI 82 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l 82 (332)
..+++.+. -.|.+|+.|.+...++...++|..||..++.++..-|
T Consensus 148 ~~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 34666554 3567789999999999999999999999988776544
No 298
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=43.45 E-value=13 Score=28.00 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=18.7
Q ss_pred cccccccccCCChhhHHhHHhHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+.+.||..||||++||.+.+....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567899999999999988776543
No 299
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=43.30 E-value=15 Score=26.47 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=23.2
Q ss_pred hccCCcccccccccCCChhhHHhHHhHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
+....+..++|..+|+|++++++.|++.
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445667789999999999999999976
No 300
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=43.26 E-value=10 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.3
Q ss_pred cccccccCCChhhHHhHHhHhH
Q psy15697 58 HIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 58 ~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+.|+..||||+++|..-+....
T Consensus 32 ~~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 32 RALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3678899999999887776544
No 301
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.21 E-value=16 Score=28.61 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.+||..+|+|++||.+.+++...
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358899999999999999999887654
No 302
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=42.58 E-value=6.8 Score=29.25 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=23.2
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
...|.++..+|...|||++|++++.+
T Consensus 22 ~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 22 KKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34789999999999999999999876
No 303
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=42.57 E-value=6.1 Score=31.73 Aligned_cols=29 Identities=7% Similarity=-0.112 Sum_probs=25.1
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHh
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
-.+-.+|.++..+|...|||++|++++-+
T Consensus 97 ~lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 97 DWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34466899999999999999999998876
No 304
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.36 E-value=7.8 Score=28.55 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=19.3
Q ss_pred cccccccccCCChhhHHhHHhHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+.+.|+..||||++||.+.+....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455788999999999988777654
No 305
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=41.91 E-value=17 Score=26.21 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=26.1
Q ss_pred HHHHHhhh----ccCCcccccccccCCChhhHHhHHh
Q psy15697 44 VLSCLHWM----GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 44 l~~~L~~L----~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+.-.|..+ ..|.++.++|...|||++|++++.+
T Consensus 35 ~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 35 VGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44444444 4588999999999999999999876
No 306
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=41.74 E-value=19 Score=29.40 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=33.5
Q ss_pred hhhccCCcccccccccCCChhhHHhHHhHhHHHHHHhhhccccC
Q psy15697 49 HWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVDTFFQRMVK 92 (332)
Q Consensus 49 ~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~~l~~~~I~ 92 (332)
..++...+..+++..+|+++.|+.+..+.+.+.+.. +.|.++.
T Consensus 154 ~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~-~~p~~~~ 196 (207)
T 1c9b_A 154 QASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPD-LFPTDFK 196 (207)
T ss_dssp HTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHH-HSCSSCC
T ss_pred HHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-hChHHHc
Confidence 334445667889999999999999999999888877 5566554
No 307
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=41.18 E-value=7.4 Score=29.69 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=25.0
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.|.+...||..||+|..+|.+|+.+.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4889999999999999999999987654
No 308
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.14 E-value=5.7 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=0.0
Q ss_pred ccCCcccccccccCCChhhHHhHHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
..|.++.++|...|+|++|++++-+
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp -------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4578999999999999999999844
No 309
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.12 E-value=29 Score=24.55 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=47.2
Q ss_pred ChhHHHHHhcCCHHHHHHHHHHh-ccCcCCCCCCCCCCCHHHHHHHHHhhhcc-CCcccccccccCC-ChhhHHhHHhHh
Q psy15697 2 TPFAFKEAFRLSATQVEFILEEI-APALTTPTERNVALSAKEKVLSCLHWMGV-GSPYHIIGATHGP-SKSSICRSIHEV 78 (332)
Q Consensus 2 ~d~~f~~~frms~~~F~~L~~~L-~~~~~~~~~~~~~~~~~~~l~~~L~~L~~-g~~~~~l~~~fgi-s~sTv~r~~~~v 78 (332)
+-+++-..++||+.+|..++... +... ...-...++..+...|.. +.+..++|...|- +.+..++.|++.
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~s~-------~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~ 93 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGIPF-------QDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKY 93 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCH-------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34566778899998888887664 2211 111224455556666654 6788999999997 677788888765
Q ss_pred H
Q psy15697 79 V 79 (332)
Q Consensus 79 ~ 79 (332)
.
T Consensus 94 ~ 94 (103)
T 3lsg_A 94 Y 94 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 310
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=41.08 E-value=19 Score=28.24 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=23.4
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+...+..++|..||+|++||.+.+.+...
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~L~~ 53 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRRLER 53 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34468899999999999999987777543
No 311
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=41.01 E-value=18 Score=25.92 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=21.8
Q ss_pred cCCcccccccccCCChhhHHhHHhHh
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...+..++|..+|+|++++++.|++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566789999999999999999975
No 312
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=40.92 E-value=8 Score=28.58 Aligned_cols=27 Identities=7% Similarity=-0.208 Sum_probs=23.7
Q ss_pred hccCCcccccccccCCChhhHHhHHhH
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
...|.++.++|...|||+++++++-+-
T Consensus 17 ~~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 17 EERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HTTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 346899999999999999999998763
No 313
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=40.56 E-value=8.8 Score=32.15 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=26.5
Q ss_pred HHHhhhccCCcccccccccCCChhhHHhHHh
Q psy15697 46 SCLHWMGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 46 ~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
+--+....|.++..||...|||+|+++++.+
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 3445566899999999999999999999987
No 314
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=40.54 E-value=45 Score=25.65 Aligned_cols=75 Identities=20% Similarity=0.063 Sum_probs=41.8
Q ss_pred hhHHHHHhcCCHHHHHHHHHHhccC--cCC--CCCC-CCCCCHHHHHHHHHhhhc--cCCccccccccc----------C
Q psy15697 3 PFAFKEAFRLSATQVEFILEEIAPA--LTT--PTER-NVALSAKEKVLSCLHWMG--VGSPYHIIGATH----------G 65 (332)
Q Consensus 3 d~~f~~~frms~~~F~~L~~~L~~~--~~~--~~~~-~~~~~~~~~l~~~L~~L~--~g~~~~~l~~~f----------g 65 (332)
-.+.-+.+++++.++...+...... +.. ..++ ...++.+..- ..+.++. ...+...++..+ .
T Consensus 44 ~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~-~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~ 122 (159)
T 2k27_A 44 PCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVE-KIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTV 122 (159)
T ss_dssp HHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHH-HHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHH-HHHHHHHHCccchHHHHHHHHHHhcccccCCc
Confidence 3455677899999988887665432 111 1111 2345543322 2223333 235666666554 4
Q ss_pred CChhhHHhHHhHh
Q psy15697 66 PSKSSICRSIHEV 78 (332)
Q Consensus 66 is~sTv~r~~~~v 78 (332)
+|.+||++++++.
T Consensus 123 ~S~sTV~r~L~~~ 135 (159)
T 2k27_A 123 PSVSSINRIIRTK 135 (159)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 7888888887653
No 315
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.34 E-value=33 Score=24.44 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=49.0
Q ss_pred ChhHHHHHhcCCHHHHHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhccCC---cccccccccCCC-hhhHHhHHhH
Q psy15697 2 TPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGVGS---PYHIIGATHGPS-KSSICRSIHE 77 (332)
Q Consensus 2 ~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~~g~---~~~~l~~~fgis-~sTv~r~~~~ 77 (332)
+-++.-..++||+.+|..++....-. .....--..++-.+...|..+. +..++|...|-+ .+..++.|++
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~~~G~------s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 93 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQRSRGY------SPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRD 93 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHTSS------CHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhCc------CHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566778899999998888764210 0011223455666777788765 889999999974 6777888877
Q ss_pred hH
Q psy15697 78 VV 79 (332)
Q Consensus 78 v~ 79 (332)
..
T Consensus 94 ~~ 95 (108)
T 3mn2_A 94 MF 95 (108)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 316
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=39.82 E-value=11 Score=30.34 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
+++.+.- .|.++..|.+...+|..+++|..||..++.+...-|.
T Consensus 143 Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4444433 4556788999999999999999999988887766543
No 317
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=39.21 E-value=8.7 Score=28.87 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=19.1
Q ss_pred cccccccccCCChhhHHhHHhHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+.+.||..||||++||.+.+....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 356789999999999988776544
No 318
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=38.77 E-value=22 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=22.8
Q ss_pred ccCCcccccccccCCChhhHHhHHhHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
....+..++|..+|+|++++++.|++.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344677789999999999999999976
No 319
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=38.63 E-value=16 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.0
Q ss_pred cCCcccccccccCCChhhHHhHHhHh
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
...+..++|..+|+|++++++.|++.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34566789999999999999999976
No 320
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=38.04 E-value=8.7 Score=31.54 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.1
Q ss_pred hccCCcccccccccCCChhhHHhHHh
Q psy15697 51 MGVGSPYHIIGATHGPSKSSICRSIH 76 (332)
Q Consensus 51 L~~g~~~~~l~~~fgis~sTv~r~~~ 76 (332)
...|.++.++|...|+|+||++++++
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 45789999999999999999999965
No 321
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=37.73 E-value=35 Score=24.37 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=46.8
Q ss_pred hhHHHHHhcCCHHHHHHHHHHh-ccCcCCCCCCCCCCCHHHHHHHHHhhhc-cCCcccccccccCC-ChhhHHhHHhHhH
Q psy15697 3 PFAFKEAFRLSATQVEFILEEI-APALTTPTERNVALSAKEKVLSCLHWMG-VGSPYHIIGATHGP-SKSSICRSIHEVV 79 (332)
Q Consensus 3 d~~f~~~frms~~~F~~L~~~L-~~~~~~~~~~~~~~~~~~~l~~~L~~L~-~g~~~~~l~~~fgi-s~sTv~r~~~~v~ 79 (332)
-++.-..++||+..|..++... +... ...-...++-.+...|. ++.+..++|...|- +.+..++.|++..
T Consensus 24 ~~~lA~~~~~S~~~l~r~fk~~~G~s~-------~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 96 (108)
T 3oou_A 24 LKTLGNDFHINAVYLGQLFQKEMGEHF-------TDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHT 96 (108)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCH-------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHh
Confidence 4566678899999988887664 2111 11112345555666665 46789999999998 6777888888764
No 322
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=37.58 E-value=22 Score=24.92 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=21.2
Q ss_pred cCCcccccccccCCChhhHHhHHhHh
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
++......|..+|||++|+++.+++.
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 45566788999999999999888763
No 323
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=37.27 E-value=43 Score=24.44 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=48.0
Q ss_pred hhHHHHHhcCCHHHHHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhc-cCCcccccccccCC-ChhhHHhHHhHhHH
Q psy15697 3 PFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMG-VGSPYHIIGATHGP-SKSSICRSIHEVVP 80 (332)
Q Consensus 3 d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~-~g~~~~~l~~~fgi-s~sTv~r~~~~v~~ 80 (332)
-+++-..++||+..|..++...+... ..+--..++-.+...|. ++.+..+||...|- +.+..++.|++...
T Consensus 26 ~~~lA~~~~~S~~~l~r~fk~~G~s~-------~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G 98 (120)
T 3mkl_A 26 LARIASELLMSPSLLKKKLREEETSY-------SQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYG 98 (120)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTCCH-------HHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCcCHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
Confidence 45667789999999988876531100 11122445666667776 56789999999996 57778888877653
No 324
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=37.17 E-value=17 Score=26.82 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=30.6
Q ss_pred CCH-HHHHHHHHhhhccCCcccccccccC----CChhhHHhHHhHhHH
Q psy15697 38 LSA-KEKVLSCLHWMGVGSPYHIIGATHG----PSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~-~~~l~~~L~~L~~g~~~~~l~~~fg----is~sTv~r~~~~v~~ 80 (332)
+++ +..++.+|+- ..+.+..+|+..++ ++.+||++++++...
T Consensus 8 Lt~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 8 ISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 444 4456666666 34678899999987 589999988887654
No 325
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=37.11 E-value=14 Score=31.47 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=31.3
Q ss_pred CCHH-HHHHHHHhhhcc-CCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 38 LSAK-EKVLSCLHWMGV-GSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 38 ~~~~-~~l~~~L~~L~~-g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
+++. ..++..|+.-.. +.+..+||..++++++|+++++++....
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 4443 344455544332 3789999999999999999999887653
No 326
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.72 E-value=11 Score=28.45 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=18.7
Q ss_pred cccccccccCCChhhHHhHHhHh
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v 78 (332)
+.+.|+..||||++||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 55678899999999998876654
No 327
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.54 E-value=25 Score=24.90 Aligned_cols=25 Identities=4% Similarity=-0.012 Sum_probs=21.9
Q ss_pred CCcccccccccCCChhhHHhHHhHh
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
..+..++|..+|+|++++++.|++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567789999999999999999976
No 328
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=36.28 E-value=17 Score=27.10 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.5
Q ss_pred CcccccccccCCChhhHHhHHhHhHH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+..++|..+|+|++++.+++.....
T Consensus 27 ~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46678999999999999988877654
No 329
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=35.97 E-value=12 Score=32.36 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHhhhcc---CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEKVLSCLHWMGV---GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~l~~~L~~L~~---g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.-++.+-.|..|+. +.+..+|+...|+++||++|++.....
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345566777777777764 467889999999999999999987654
No 330
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=35.91 E-value=11 Score=27.81 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.2
Q ss_pred CCcccccccccCCChhhHHhHHhHh
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
..+..+||...|+|++||.|..+++
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 5788899999999999999998754
No 331
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=35.86 E-value=18 Score=27.16 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhc--cCCcccccccccCCChhhHHhHHhHhH
Q psy15697 41 KEKVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 41 ~~~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
...+.-++.++. ...+..++|..+|+|.+++++.|++..
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666777776 467888999999999999999998754
No 332
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=35.78 E-value=7.7 Score=34.82 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhH
Q psy15697 43 KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 43 ~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
.++..|++ ..+.++.+||..||+|++||+|.+.+..
T Consensus 24 ~iL~~l~~-~~~~t~~eLa~~l~vs~~Tv~r~l~~Le 59 (345)
T 2o0m_A 24 QILRNIYW-MQPIGRRSLSETMGITERVLRTETDVLK 59 (345)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444443 4688999999999999999999998764
No 333
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=35.33 E-value=14 Score=30.23 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+.- .|.+|+.|.+...+|..+++|..||..++.++..
T Consensus 160 Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 160 LTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5665543 4566888999999999999999999988887643
No 334
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=33.88 E-value=22 Score=28.82 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=25.4
Q ss_pred eeeecceEEEEeCCCCCcccccccCCccccceeeeccC
Q psy15697 115 AGCVDGTMVLIDAPNEHEDQFVNRNGDHALNVMAICGP 152 (332)
Q Consensus 115 ~G~iDgt~i~i~~P~~~~~~y~~~k~~~s~~~~~v~d~ 152 (332)
.||+|....|+. .||++++..+.++|++
T Consensus 38 aGAlDV~~tPi~----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece----------EeCCCceEEEEEEECC
Confidence 489999999986 6799999999999998
No 335
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=33.59 E-value=19 Score=30.35 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=28.2
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+...++...|+..++|+|+||+.+++.-..+-.
T Consensus 13 ~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 45 (294)
T 1ixc_A 13 AEAGNMAAAAKRLHVSQPPITRQMQALEADLGV 45 (294)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHhCCCcchHHHHHHHHHHHHCC
Confidence 334488889999999999999999999888765
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.39 E-value=32 Score=26.39 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=19.5
Q ss_pred CCccccccccc-----CCChhhHHhHHhHhHH
Q psy15697 54 GSPYHIIGATH-----GPSKSSICRSIHEVVP 80 (332)
Q Consensus 54 g~~~~~l~~~f-----gis~sTv~r~~~~v~~ 80 (332)
..+..+|...+ ++|.+||+|.+..+.+
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 34555666555 8999999998876654
No 337
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=32.96 E-value=13 Score=28.04 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=17.2
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.+.|+..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3457789999999999876654
No 338
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=32.43 E-value=56 Score=27.55 Aligned_cols=29 Identities=3% Similarity=-0.043 Sum_probs=23.9
Q ss_pred hhhccCCcccccccccCCChhhHHhHHhH
Q psy15697 49 HWMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 49 ~~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..+....+..++|..+|+|++++++.|++
T Consensus 180 ~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 208 (276)
T 3gbg_A 180 SDITRNWRWADICGELRTNRMILKKELES 208 (276)
T ss_dssp HTTTSCCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455677888999999999999999975
No 339
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=32.40 E-value=14 Score=26.02 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred hhccCCcccccccccCCChhh----HHhHHh
Q psy15697 50 WMGVGSPYHIIGATHGPSKSS----ICRSIH 76 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sT----v~r~~~ 76 (332)
+...|.++.++|...|+|++| ++++.+
T Consensus 10 R~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 10 RLRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 345688999999999999999 777765
No 340
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=32.21 E-value=13 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.9
Q ss_pred CCcccccccccCCChhhHHhHHhHh
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
..+..+||...|+|++||.|..+++
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 5788899999999999999988764
No 341
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=32.15 E-value=25 Score=25.89 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhccCCccccccccc--CCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGVGSPYHIIGATH--GPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~g~~~~~l~~~f--gis~sTv~r~~~~v~~ 80 (332)
..+++-.|..- ...+..+||..+ |+|+++|++.++....
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLAD 55 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44444433222 357888999999 9999999999887655
No 342
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.53 E-value=24 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.2
Q ss_pred cCCcccccccccCCChhhHHhHHhH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
++......|...|||++|+++.+.+
T Consensus 31 ~~gn~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 31 YDYDLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp TTTCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445667899999999999988765
No 343
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=31.41 E-value=6.4 Score=29.48 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=23.0
Q ss_pred cCCcccccccccCCChhhHHhHHhH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.|.++.++|...|+|++|++++-+-
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5889999999999999999999876
No 344
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=31.24 E-value=43 Score=27.01 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=28.5
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHhHhHHHHH
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIV 83 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~ 83 (332)
...++...+..+++...|+++.|+.+..+++...+.
T Consensus 159 ~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 159 SLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 333445667889999999999999999988887654
No 345
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.56 E-value=27 Score=25.56 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=21.9
Q ss_pred ccCCcccccccccCCChhhHHhHHhHh
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEV 78 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v 78 (332)
....+..++|..+|+|++++++.|++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 344567789999999999999999864
No 346
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=30.24 E-value=34 Score=24.18 Aligned_cols=36 Identities=22% Similarity=0.101 Sum_probs=28.1
Q ss_pred HHHHHhhhccCCcccccccccCCChhhHHhHHhHhH
Q psy15697 44 VLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 44 l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+.-.|..+..|...+.++...|+|.+++.+++....
T Consensus 10 i~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~ 45 (95)
T 1r7j_A 10 IQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLM 45 (95)
T ss_dssp HHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 444566666667888999999999999988877654
No 347
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=30.17 E-value=13 Score=28.15 Aligned_cols=28 Identities=7% Similarity=0.091 Sum_probs=24.2
Q ss_pred hhccCCcccccccccCCChhhHHhHHhH
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+-..|.++.++|...|+|+++++++-+-
T Consensus 12 R~~~gltq~elA~~~gis~~~is~iE~g 39 (130)
T 3fym_A 12 RERLGMTLTELEQRTGIKREMLVHIENN 39 (130)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3457999999999999999999998763
No 348
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=29.76 E-value=28 Score=28.64 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 41 KEKVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 41 ~~~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+..+-+++.|....+-++||..+|+|++||+..+++...
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e 56 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSH 56 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445566666766678889999999999999988887654
No 349
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=29.59 E-value=16 Score=32.19 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=27.0
Q ss_pred HHHHhhhccCCcccccccc----cC---CChhhHHhHHhHhH
Q psy15697 45 LSCLHWMGVGSPYHIIGAT----HG---PSKSSICRSIHEVV 79 (332)
Q Consensus 45 ~~~L~~L~~g~~~~~l~~~----fg---is~sTv~r~~~~v~ 79 (332)
..++..+..|.+...++.. || +|.+||.++++++.
T Consensus 13 ~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 13 TVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 4455667788888777666 55 99999999999764
No 350
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=29.57 E-value=24 Score=28.16 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=20.2
Q ss_pred cccccccccCCChhhHHhHHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~ 77 (332)
++.++|+.+|+|++|++++.+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8899999999999999999863
No 351
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=29.45 E-value=17 Score=29.21 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=23.2
Q ss_pred ccCCcccccccccCCChhhHHhHHhH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..|.++.++|...|+|++|++++.+-
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46889999999999999999999873
No 352
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.31 E-value=31 Score=26.15 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=25.6
Q ss_pred Hhhhc-cCCccccccccc-CCChhhHHhHHhHhHH
Q psy15697 48 LHWMG-VGSPYHIIGATH-GPSKSSICRSIHEVVP 80 (332)
Q Consensus 48 L~~L~-~g~~~~~l~~~f-gis~sTv~r~~~~v~~ 80 (332)
|+.|. ...++.+|+... |||++|+++.+++...
T Consensus 32 L~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~ 66 (131)
T 4a5n_A 32 FYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEA 66 (131)
T ss_dssp HHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 34444 446899999999 9999999988876654
No 353
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=29.16 E-value=23 Score=31.27 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHhhhccC--CcccccccccCCChhhHHhHHhHhHH
Q psy15697 47 CLHWMGVG--SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 47 ~L~~L~~g--~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.|..|..+ .+..+||+.|+||++||.|.+.....
T Consensus 10 Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 10 LIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444443 46778999999999999999987654
No 354
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=28.73 E-value=35 Score=31.68 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=31.1
Q ss_pred CCCHHH-HHHHHHhhhc--cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 37 ALSAKE-KVLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 37 ~~~~~~-~l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+++.+ .++..|+. . .+.+..+|+...+++++|+++++++...
T Consensus 401 ~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 401 NLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp CCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 365554 34444432 3 4578999999999999999999988654
No 355
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=28.73 E-value=40 Score=28.44 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=19.2
Q ss_pred cccccccccCCChhhHHhHHhHhH
Q psy15697 56 PYHIIGATHGPSKSSICRSIHEVV 79 (332)
Q Consensus 56 ~~~~l~~~fgis~sTv~r~~~~v~ 79 (332)
+-++|+..||||+.||.+.+....
T Consensus 38 se~~La~~~~vSr~tvr~Al~~L~ 61 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELL 61 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346788999999999988776654
No 356
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=28.36 E-value=28 Score=28.13 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.9
Q ss_pred cCC--cccccccccCCC-hhhHHhHHhHh
Q psy15697 53 VGS--PYHIIGATHGPS-KSSICRSIHEV 78 (332)
Q Consensus 53 ~g~--~~~~l~~~fgis-~sTv~r~~~~v 78 (332)
.|. ++.++|..+|++ ++|++++++..
T Consensus 22 ~g~~ps~~elA~~lgiss~~tv~~~~~~l 50 (202)
T 1jhf_A 22 TGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHhCCCChHHHHHHHHHH
Confidence 355 899999999999 99999987743
No 357
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.32 E-value=61 Score=23.22 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=46.3
Q ss_pred ChhHHHHHhcCCHHHHHHHHHHhccCcCCCCCCCCCCCHHHHHHHHHhhhcc-CCcccccccccCC-ChhhHHhHHhHhH
Q psy15697 2 TPFAFKEAFRLSATQVEFILEEIAPALTTPTERNVALSAKEKVLSCLHWMGV-GSPYHIIGATHGP-SKSSICRSIHEVV 79 (332)
Q Consensus 2 ~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~~~l~~~L~~L~~-g~~~~~l~~~fgi-s~sTv~r~~~~v~ 79 (332)
+-+++-..++||+.+|..++....-.- ....--..++..+...|.. +.+..+||...|- +.+..++.|++..
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~~G~s------~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~ 98 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFKQYLGTV------PSKYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHF 98 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHTSSC------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 345667788899988888877642100 0111123455556666665 6788899999987 4666777777654
No 358
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=28.28 E-value=33 Score=31.21 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=25.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...+..+|+...|+|++||++++++..+
T Consensus 29 ~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 29 GPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp CSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3468889999999999999999998877
No 359
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=28.20 E-value=26 Score=29.67 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=30.2
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.-++...++...|+..+||+|++|+.+++.-..+-.
T Consensus 11 f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 47 (306)
T 3hhg_A 11 FVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGV 47 (306)
T ss_dssp HHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 3344555688899999999999999999998887765
No 360
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=28.06 E-value=12 Score=32.43 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHHhhh
Q psy15697 47 CLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVDTFF 87 (332)
Q Consensus 47 ~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~~l~ 87 (332)
++....+|.++...|+..++|+|+||+.+++.-..+-..|.
T Consensus 9 F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf 49 (324)
T 1al3_A 9 IVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIF 49 (324)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCCEEE
Confidence 33334444489999999999999999999998777665433
No 361
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=28.00 E-value=17 Score=27.79 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=30.0
Q ss_pred HHHHHHhhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 43 KVLSCLHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 43 ~l~~~L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
++-+++. ++...++...|...|+|+++|++.+.+.-..+-.
T Consensus 28 ~L~~f~a-v~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~ 68 (135)
T 2ijl_A 28 KVELMQL-IAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQ 68 (135)
T ss_dssp HHHHHHH-HHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSS
T ss_pred HHHHHHH-HHHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3433333 3444588889999999999999999988776544
No 362
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=27.86 E-value=22 Score=29.21 Aligned_cols=29 Identities=3% Similarity=-0.043 Sum_probs=24.5
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..+.+..+|+..+|+|++|+++.++....
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~ 54 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEE 54 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45568889999999999999999887655
No 363
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.78 E-value=24 Score=23.84 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=13.6
Q ss_pred eeeeccCCcceEEeecc
Q psy15697 146 VMAICGPNYKFYAVNAN 162 (332)
Q Consensus 146 ~~~v~d~~g~~~~v~~~ 162 (332)
+.+|+|.+|+|+|++-.
T Consensus 51 ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 51 LTGVIDDRGKFIYITPS 67 (72)
T ss_dssp SCEEECTTCCEEECCCS
T ss_pred eEEEEeCCCCEEEecHH
Confidence 46778889999998764
No 364
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=27.00 E-value=32 Score=27.09 Aligned_cols=26 Identities=4% Similarity=-0.095 Sum_probs=20.5
Q ss_pred CcccccccccCCChhhHHhHHhHhHH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
.+-.+||..++||++.+.+++.....
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L~~ 54 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVLHK 54 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45677999999999988888776544
No 365
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=26.76 E-value=27 Score=29.61 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=32.9
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHhHhHHHHHHhhhcc
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVDTFFQR 89 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~~l~~~ 89 (332)
+.-++...++...|+..++|+|+||+.+++.-..+-..|..+
T Consensus 14 f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R 55 (303)
T 3isp_A 14 LAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR 55 (303)
T ss_dssp HHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEEC
T ss_pred HHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEc
Confidence 334445568888999999999999999999998887644443
No 366
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=26.10 E-value=37 Score=24.27 Aligned_cols=36 Identities=6% Similarity=-0.026 Sum_probs=26.3
Q ss_pred HHHHHHhhhccCCccccccc-ccCCChhhHHhHHhHhH
Q psy15697 43 KVLSCLHWMGVGSPYHIIGA-THGPSKSSICRSIHEVV 79 (332)
Q Consensus 43 ~l~~~L~~L~~g~~~~~l~~-~fgis~sTv~r~~~~v~ 79 (332)
.++++|.... ..+..+|++ ..++.+||++|-+.-..
T Consensus 20 siL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~ 56 (95)
T 1bja_A 20 TILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLI 56 (95)
T ss_dssp HHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445554444 677888999 99999999998776543
No 367
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.36 E-value=18 Score=29.11 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=23.3
Q ss_pred ccCCcccccccccCCChhhHHhHHhH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
..|.++.++|...|+|++|++++.+.
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46889999999999999999999873
No 368
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.27 E-value=30 Score=31.76 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=25.2
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
...+..+|+...|+|++||++++++..+
T Consensus 52 ~~~sr~ela~~~gls~~tv~~~v~~L~~ 79 (429)
T 1z05_A 52 GPISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999998876
No 369
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.70 E-value=21 Score=27.79 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.5
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+.+.++|+...|||++|++++|..--..+..
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRA 62 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 67889999999999999999999865444444
No 370
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=24.63 E-value=33 Score=26.29 Aligned_cols=43 Identities=9% Similarity=-0.009 Sum_probs=27.9
Q ss_pred CCHHHHHHH-HHhhhccC-----CcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKEKVLS-CLHWMGVG-----SPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~~l~~-~L~~L~~g-----~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
++.....++ +|.+|+.. .+-.++|..+++|++++.+++.....
T Consensus 6 ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~ 54 (143)
T 3t8r_A 6 ISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRN 54 (143)
T ss_dssp -CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444444444 45555532 35667899999999988888776544
No 371
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=24.33 E-value=38 Score=26.47 Aligned_cols=40 Identities=5% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHHHHhhhccC---CcccccccccC-CChhhHHhHHhHhHHH
Q psy15697 42 EKVLSCLHWMGVG---SPYHIIGATHG-PSKSSICRSIHEVVPV 81 (332)
Q Consensus 42 ~~l~~~L~~L~~g---~~~~~l~~~fg-is~sTv~r~~~~v~~~ 81 (332)
.++.+.-..+++. .+..+|...++ ||++||++.++...++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ea 73 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDR 73 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 4455555555553 34456677778 9999999998876653
No 372
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=24.29 E-value=45 Score=25.90 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=26.1
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+.+.++|+...|||++|++++|..--..+..
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~a 57 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKEEIYRK 57 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 35789999999999999999999865555444
No 373
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.17 E-value=34 Score=23.58 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=20.2
Q ss_pred cCCcccccccccCCChhhHHhHHhH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
++......|...|||++|+++.+++
T Consensus 53 ~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 53 CDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred hCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4455677899999999999988765
No 374
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=23.95 E-value=32 Score=29.22 Aligned_cols=33 Identities=6% Similarity=0.011 Sum_probs=28.1
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+...++...|+..++|+|+||+.+++.-..+-.
T Consensus 14 ~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 46 (305)
T 3fxq_A 14 EEVGSLRAAAQLLHLSQPALSAAIQQLEDELKA 46 (305)
T ss_dssp HHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 344578889999999999999999998888765
No 375
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.77 E-value=63 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCHHH-HHHHHHhhhc-cCCcccccccccCCChhhHHhHHhHhHH
Q psy15697 38 LSAKE-KVLSCLHWMG-VGSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 38 ~~~~~-~l~~~L~~L~-~g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
+++.+ .++.+|+.-. .|.+..+|+..++++.+|+++++++...
T Consensus 32 lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 32 MTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp SCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 55544 3545554432 3679999999999999999998887654
No 376
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=23.59 E-value=25 Score=29.96 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=28.3
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+...++...|+..+||+|+||+.+++.-..+-.
T Consensus 22 ~~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 54 (310)
T 2esn_A 22 YRHRNVGTAASELAISASAFSHALGRLRQGLDD 54 (310)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHhCCChHHHHHHHHHHHHhhCC
Confidence 344488889999999999999999999888765
No 377
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=23.53 E-value=41 Score=27.90 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhhc----cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 37 ALSAKEKVLSCLHWMG----VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 37 ~~~~~~~l~~~L~~L~----~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
..+.+.-+-.++..+. .+.+.+.|+...|||++|++++|..--..+..
T Consensus 5 ~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~ 56 (234)
T 2opt_A 5 PLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDL 56 (234)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHH
Confidence 3444444445555544 35789999999999999999999865444444
No 378
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=23.30 E-value=19 Score=28.17 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=25.8
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+.+.++|+...|||++|++++|..--..+..
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 52 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLE 52 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHH
Confidence 35788999999999999999999865444444
No 379
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=23.16 E-value=33 Score=23.55 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhccCCcccccccccCCChh-hHHhHHhHh
Q psy15697 40 AKEKVLSCLHWMGVGSPYHIIGATHGPSKS-SICRSIHEV 78 (332)
Q Consensus 40 ~~~~l~~~L~~L~~g~~~~~l~~~fgis~s-Tv~r~~~~v 78 (332)
..++++..|...+ +.+..+||..+||+.. +|.+.+...
T Consensus 12 ~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~L 50 (79)
T 1xmk_A 12 IKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDM 50 (79)
T ss_dssp HHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3555655554443 5677889999999998 888776654
No 380
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=23.15 E-value=21 Score=28.01 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=24.5
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPVI 82 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~l 82 (332)
.+.+.++|+...|||++|++++|..=-..+
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 357889999999999999999998544444
No 381
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=23.09 E-value=19 Score=28.37 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=26.3
Q ss_pred cCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 53 VGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 53 ~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.+.+.++||..-|||++|++++|..--..+..
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~ 62 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWPNKAAVVMD 62 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHCCCHHHHHHH
Confidence 35789999999999999999999865555544
No 382
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=22.80 E-value=31 Score=31.08 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=26.7
Q ss_pred ccCCcccccccccCCChhhHHhHHhHhHHH
Q psy15697 52 GVGSPYHIIGATHGPSKSSICRSIHEVVPV 81 (332)
Q Consensus 52 ~~g~~~~~l~~~fgis~sTv~r~~~~v~~~ 81 (332)
....+..+|++..|+|++||++++++.++.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 566799999999999999999999988773
No 383
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.74 E-value=63 Score=20.52 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=18.9
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
......|...|||++|+++.+++
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 35667889999999999988765
No 384
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.69 E-value=25 Score=26.46 Aligned_cols=16 Identities=6% Similarity=0.297 Sum_probs=12.9
Q ss_pred CCChhhHHhHHhHhHH
Q psy15697 65 GPSKSSICRSIHEVVP 80 (332)
Q Consensus 65 gis~sTv~r~~~~v~~ 80 (332)
++|.+||+|.++.+.+
T Consensus 42 ~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 42 NIGLTTVYRTLQSMAS 57 (131)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHhhHHHHHHHHHH
Confidence 8999999988776544
No 385
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=22.64 E-value=30 Score=28.83 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=29.4
Q ss_pred hhhccCCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 49 HWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 49 ~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
.-++...++...|+..++|+|++|+.+++.-..+-.
T Consensus 10 ~~v~~~~s~t~AA~~L~isq~avS~~i~~LE~~lg~ 45 (291)
T 3szp_A 10 RLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNL 45 (291)
T ss_dssp HHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 334455678889999999999999999998877765
No 386
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=22.01 E-value=22 Score=23.77 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=18.1
Q ss_pred CcccccccccCCChhhHHhHHhH
Q psy15697 55 SPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 55 ~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
.+..++|..+|||++++.+.+++
T Consensus 17 LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eCHHHHHHHHCcCHHHHHHHHHc
Confidence 35567889999999999887643
No 387
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=21.96 E-value=22 Score=28.40 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=25.1
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 67 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYFGSKEKLFST 67 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHHSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 4788899999999999999999855444444
No 388
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.83 E-value=42 Score=25.31 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=13.9
Q ss_pred CCChhhHHhHHhHhHHH
Q psy15697 65 GPSKSSICRSIHEVVPV 81 (332)
Q Consensus 65 gis~sTv~r~~~~v~~~ 81 (332)
++|.+||+|.++.+.+.
T Consensus 50 ~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 89999999988776653
No 389
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=21.53 E-value=18 Score=28.45 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=26.0
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDKEDILKN 62 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 5788999999999999999999865555554
No 390
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.38 E-value=19 Score=27.90 Aligned_cols=31 Identities=3% Similarity=-0.033 Sum_probs=25.2
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKDELLEQ 58 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHHHHHHH
Confidence 4788899999999999999999865444444
No 391
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=21.37 E-value=54 Score=25.67 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=31.2
Q ss_pred CCCCHHHHHHH-HHhhhcc-----CCcccccccccCCChhhHHhHHhHhHH
Q psy15697 36 VALSAKEKVLS-CLHWMGV-----GSPYHIIGATHGPSKSSICRSIHEVVP 80 (332)
Q Consensus 36 ~~~~~~~~l~~-~L~~L~~-----g~~~~~l~~~fgis~sTv~r~~~~v~~ 80 (332)
..++.....++ +|.+|+. ..+-.++|..+++|++.+.+++.....
T Consensus 20 M~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ 70 (159)
T 3lwf_A 20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRN 70 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eeCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44666666655 5556653 145677999999999988887776544
No 392
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=21.10 E-value=28 Score=29.50 Aligned_cols=40 Identities=8% Similarity=-0.074 Sum_probs=29.8
Q ss_pred HhhhccCCcccccccccCCChhhHHhHHhHhHHHHHHhhh
Q psy15697 48 LHWMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVDTFF 87 (332)
Q Consensus 48 L~~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~~l~ 87 (332)
+.-++...++...|+..++|+||+|+.+++.-..+-..|.
T Consensus 12 f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf 51 (306)
T 3fzv_A 12 FVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLF 51 (306)
T ss_dssp HHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC
T ss_pred HHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCCeeE
Confidence 3334445588889999999999999999999888776443
No 393
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=20.92 E-value=19 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAA 58 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 5788999999999999999999865555544
No 394
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=20.88 E-value=21 Score=31.02 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHhhhc--cCCcccccccccCCChhhHHhHHhH
Q psy15697 44 VLSCLHWMG--VGSPYHIIGATHGPSKSSICRSIHE 77 (332)
Q Consensus 44 l~~~L~~L~--~g~~~~~l~~~fgis~sTv~r~~~~ 77 (332)
+.--|..++ .|.++..+|...|||++|++++.+-
T Consensus 31 ~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g 66 (311)
T 4ich_A 31 LRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNG 66 (311)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 444444444 5789999999999999999998774
No 395
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=20.57 E-value=50 Score=26.37 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=24.6
Q ss_pred hhhc-cCCcccccccccC-CChhhHHhHHhHhHHH
Q psy15697 49 HWMG-VGSPYHIIGATHG-PSKSSICRSIHEVVPV 81 (332)
Q Consensus 49 ~~L~-~g~~~~~l~~~fg-is~sTv~r~~~~v~~~ 81 (332)
..|. ...+..+++..+| +|++|+++.++....+
T Consensus 30 ~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 30 QLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3444 4457778889886 9999999998876654
No 396
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.30 E-value=35 Score=27.07 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=25.4
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~ 58 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGELFAS 58 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 5789999999999999999999854444444
No 397
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=20.18 E-value=22 Score=30.56 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=0.0
Q ss_pred hhccCCcccccccccCCChhhHHhHHhHhHHHHHHhh
Q psy15697 50 WMGVGSPYHIIGATHGPSKSSICRSIHEVVPVIVDTF 86 (332)
Q Consensus 50 ~L~~g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~~l 86 (332)
-++...++...|+..+||+|+||+.+++.-..+-..|
T Consensus 11 ~va~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~~L 47 (312)
T 2h9b_A 11 AVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQL 47 (312)
T ss_dssp -------------------------------------
T ss_pred HHHHhCCHHHHHHHhcCCccHHHHHHHHHHHHhCCEe
Confidence 3445558888999999999999999999887776533
No 398
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=20.10 E-value=18 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=25.2
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHFESKQKLLEE 54 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 4678899999999999999999865554444
No 399
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=20.09 E-value=20 Score=28.44 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCcccccccccCCChhhHHhHHhHhHHHHHH
Q psy15697 54 GSPYHIIGATHGPSKSSICRSIHEVVPVIVD 84 (332)
Q Consensus 54 g~~~~~l~~~fgis~sTv~r~~~~v~~~l~~ 84 (332)
+.+.++|+...|||++|++++|..--..+..
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 64 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHFKNKSDLFSE 64 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCceeehhhcCCHHHHHHH
Confidence 4788999999999999999999865554444
Done!