RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15697
         (332 letters)



>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 28.2 bits (63), Expect = 0.68
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 278 DNENQNVEIHDDEAEDDGEEEAVDDPDEIDEEEQPRQDRNNP 319
           + +N + +  DD  ED+G ++  +  +E  E  +       P
Sbjct: 4   NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERP 45


>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA,
          HIVp17, p17, MA) {Human immunodeficiency virus type 1
          [TaxId: 11676]}
          Length = 101

 Score = 26.1 bits (58), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 20 ILEEIAPALTTPTERNVALSAKEKVLSCLH 49
          IL ++ P+L T +E   +L     VL C+H
Sbjct: 54 ILGQLQPSLQTGSEELRSLYNTIAVLYCVH 83


>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency
          virus [TaxId: 11723]}
          Length = 114

 Score = 26.1 bits (58), Expect = 2.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 20 ILEEIAPALTTPTERNVALSAKEKVLSCLH 49
          IL  +AP + T +E   +L     V+ C+H
Sbjct: 55 ILSVLAPLVPTGSENLKSLYNTVCVIWCIH 84


>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thermotoga maritima [TaxId: 2336]}
          Length = 362

 Score = 26.6 bits (58), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 166 SVHDARVMRNSMVYRKFDEEGWRPFPDAVI 195
           SV  A V+ +SM++RK   E  R +PD  +
Sbjct: 192 SVDKANVLYSSMLWRKVVNEVAREYPDVEL 221


>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 100

 Score = 25.2 bits (55), Expect = 5.9
 Identities = 6/36 (16%), Positives = 19/36 (52%)

Query: 269 HNIALTIDRDNENQNVEIHDDEAEDDGEEEAVDDPD 304
            NI+L +  ++ ++ ++    E  D G++  +++  
Sbjct: 56  TNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNL 91


>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thiobacillus ferrooxidans [TaxId: 920]}
          Length = 357

 Score = 26.2 bits (57), Expect = 6.1
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 11/115 (9%)

Query: 89  RMVKWPEENLNDIPMTFLRKGGFPNVAGCVDGTMVLIDAPNEHEDQFVNRNGDHALNVMA 148
           R  +   + L+  P   LR     +V   V   +       +     V        N M 
Sbjct: 105 RPAQIFPQLLDASP---LRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMV 161

Query: 149 ICGPNYKFYAVNANWP--------GSVHDARVMRNSMVYRKFDEEGWRPFPDAVI 195
                 +  A  A            SV  A V+  + ++R+   E  R +PD  +
Sbjct: 162 YDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRL 216


>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas
           putida [TaxId: 303]}
          Length = 103

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 133 DQFVNRNGDHALNVMAICGPNYKFYAVNANWPGSVHDARVMRNSMVYRKFDEEGWRPFPD 192
           D+ + R      +         +  AV+      V+           ++   +      +
Sbjct: 29  DRIIVRGSLAQPDFSVFYLQGDRVLAVDT-----VNRPVEF---NQSKQIITDRLPV--E 78

Query: 193 AVILGDSAYPLKEWL 207
             +LGD + PLKE +
Sbjct: 79  PNLLGDESVPLKEII 93


>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase,
           BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
          Length = 97

 Score = 24.4 bits (53), Expect = 9.1
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 166 SVHDARVMRNSMVYRKFDEEGWRPFPDAVILGDSAYPLKEWL 207
            V++AR        R+    G +P   A  L D A  L++  
Sbjct: 59  CVNNARDF---APLRRLLAVGAKPDRAA--LADPATDLRKLA 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,335,459
Number of extensions: 64737
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 11
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)