BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15698
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP I+ I +A L G GS VKVAV D+G+ S H N + +E N +D
Sbjct: 2 QSVPYGISQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG IA+ S LG AP A L+ +V + SW ++ +AI MD
Sbjct: 61 GSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGP--LYGTLNNPADQMDVIGV 363
V+N+S+GGP VDK ++ +++ +A GN+G T+ PA I V
Sbjct: 121 VINMSLGGPTGSTALKTVVDKA---VSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAV 177
Query: 364 GGINFEDQIAKFSSRG 379
G +N +Q A FSS G
Sbjct: 178 GAVNSANQRASFSSAG 193
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H N + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQDGSSHGTHVAGTIAAL 75
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP I+ I +A L G GS VKVAV D+G+ S H N + +E N +D
Sbjct: 2 QSVPYGISQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG IA+ S LG AP A L+ +V + SW ++ +AI MD
Sbjct: 61 GSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGP--LYGTLNNPADQMDVIGV 363
V+N+S+GGP VDK ++ +++ +A GN+G T+ PA I V
Sbjct: 121 VINMSLGGPTGSTALKTVVDKA---VSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAV 177
Query: 364 GGINFEDQIAKFSSRG 379
G +N +Q A FSS G
Sbjct: 178 GAVNSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H N + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQDGSSHGTHVAGTIAAL 75
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP I+ I +A L G GS VKVAV D+G+ S H N + +E N +D
Sbjct: 2 QSVPYGISQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG IA+ S LG +P A L+ +V + SW ++ +AI MD
Sbjct: 61 GSSHGTHVAGTIAALNNSIGVLGVSPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGP--LYGTLNNPADQMDVIGV 363
V+N+S+GGP VDK ++ +++ +A GN+G T+ PA I V
Sbjct: 121 VINMSLGGPTGSTALKTVVDKA---VSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAV 177
Query: 364 GGINFEDQIAKFSSRG 379
G +N +Q A FSS G
Sbjct: 178 GAVNSSNQRASFSSAG 193
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H N + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQDGSSHGTHVAGTIAAL 75
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 11/195 (5%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
+TVP I +++A+ + G +G+ VKV + DTG++S HT V + + E+ D
Sbjct: 2 QTVPYGIP-LIKADKVQAQGYKGANVKVGIIDTGIASSHTDLKVVGGASFVSGESYNTDG 60
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG +A+ + LG AP+ L+ +V + S + +A +DV
Sbjct: 61 NGHGTHVAGTVAALDNTTGVLGVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDV 120
Query: 309 LNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDG--PLYGTLNNPADQMDVIGVG 364
+N+S+GGP VDK + A+ +++++A GN G T+ PA VI VG
Sbjct: 121 INMSLGGPSGSTALKQAVDKAY---ASGIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVG 177
Query: 365 GINFEDQIAKFSSRG 379
++ A FSS G
Sbjct: 178 AVDSNKNRASFSSVG 192
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKV + DTG++S HT V + + E+ D GHGT VAG L
Sbjct: 22 KGANVKVGIIDTGIASSHTDLKVVGGASFVSGESYNTDGNGHGTHVAGTVAAL 74
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALDNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ PA VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALDNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ PA VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALDNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ PA VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYCGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ PA VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSEGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYCGSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ PA VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYCGSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI MD
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G G T+ PA VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASFVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALDNSIGVLGVAPSAELYAVKVLGASGSGAISSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN+G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNEG--AGSIDYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP+AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPNAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP+AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPNAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP+AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPNAELYAVKVLGASGGGSNSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALDNSIGVLGVAPSAELYAVKVLGASGSGAISSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 39/267 (14%)
Query: 191 LKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDW 242
L VP + I++A +W +G+G + V DTG H ++AER TD+
Sbjct: 18 LSEVPMGV-EIVEAPAVWRASAKGAGQIIGVIDTGXQVDHP---DLAERIIGGVNLTTDY 73
Query: 243 T-NENTLEDKLGHGTFVAGLIASSQR---CLGFAPDAELHIFRVFTNQQVSYTSWFLDAF 298
+E D GHGT VAG +A+++ +G AP A+L I + + W A
Sbjct: 74 GGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAI 133
Query: 299 NYAI------LKKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLN 352
YA+ ++M ++ +S+GGP + D V +N V ++ A GN+G N
Sbjct: 134 RYAVDWRGPKGEQMRIITMSLGGPTDSE-ELHDAVKYAVSNNVSVVXAAGNEGDGREDTN 192
Query: 353 N---PADQMDVIGVGGINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTN 409
PA +VI VG ++F+ +++ F++ T E+ DIV G ++ +
Sbjct: 193 EFAYPAAYNEVIAVGAVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLD 240
Query: 410 -GECQYMWPYCTQPLYHGAIPIIVNVT 435
G + P GA+ +I+N+
Sbjct: 241 SGYAELSGTAMAAPHVAGALALIINLA 267
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 466 SIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDWT-NENTLEDKLGHGTFVAG 515
S +G+G + V DTG H ++AER TD+ +E D GHGT VAG
Sbjct: 37 SAKGAGQIIGVIDTGXQVDHP---DLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAG 92
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 39/267 (14%)
Query: 191 LKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDW 242
L VP + I++A +W +G+G + V DTG H ++AER TD+
Sbjct: 18 LSEVPMGV-EIVEAPAVWRASAKGAGQIIGVIDTGCQVDHP---DLAERIIGGVNLTTDY 73
Query: 243 T-NENTLEDKLGHGTFVAGLIASSQR---CLGFAPDAELHIFRVFTNQQVSYTSWFLDAF 298
+E D GHGT VAG +A+++ +G AP A+L I + + W A
Sbjct: 74 GGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAI 133
Query: 299 NYAI------LKKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLN 352
YA+ ++M ++ +S+GGP + D V +N V ++ A GN+G N
Sbjct: 134 RYAVDWRGPKGEQMRIITMSLGGPTDSE-ELHDAVKYAVSNNVSVVXAAGNEGDGREDTN 192
Query: 353 N---PADQMDVIGVGGINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTN 409
PA +VI VG ++F+ +++ F++ T E+ DIV G ++ +
Sbjct: 193 EFAYPAAYNEVIAVGAVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLD 240
Query: 410 -GECQYMWPYCTQPLYHGAIPIIVNVT 435
G + P GA+ +I+N+
Sbjct: 241 SGYAELSGTAMAAPHVAGALALIINLA 267
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 466 SIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDWT-NENTLEDKLGHGTFVAG 515
S +G+G + V DTG H ++AER TD+ +E D GHGT VAG
Sbjct: 37 SAKGAGQIIGVIDTGCQVDHP---DLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAG 92
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 39/267 (14%)
Query: 191 LKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDW 242
L VP + I++A +W +G+G + V DTG H ++AER TD+
Sbjct: 18 LSEVPMGV-EIVEAPAVWRASAKGAGQIIGVIDTGCQVDHP---DLAERIIGGVNLTTDY 73
Query: 243 T-NENTLEDKLGHGTFVAGLIASSQR---CLGFAPDAELHIFRVFTNQQVSYTSWFLDAF 298
+E D GHGT VAG +A+++ +G AP A+L I + + W A
Sbjct: 74 GGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAI 133
Query: 299 NYAI------LKKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLN 352
YA+ ++M ++ +S+GGP + D V +N V ++ A GN+G N
Sbjct: 134 RYAVDWRGPKGEQMRIITMSLGGPTDSE-ELHDAVKYAVSNNVSVVCAAGNEGDGREDTN 192
Query: 353 N---PADQMDVIGVGGINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTN 409
PA +VI VG ++F+ +++ F++ T E+ DIV G ++ +
Sbjct: 193 EFAYPAAYNEVIAVGAVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLD 240
Query: 410 -GECQYMWPYCTQPLYHGAIPIIVNVT 435
G + P GA+ +I+N+
Sbjct: 241 SGYAELSGTAMAAPHVAGALALIINLA 267
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 466 SIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDWT-NENTLEDKLGHGTFVAG 515
S +G+G + V DTG H ++AER TD+ +E D GHGT VAG
Sbjct: 37 SAKGAGQIIGVIDTGCQVDHP---DLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAG 92
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNEN-TLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETPNFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP + L+ +V + SW ++ +AI MD
Sbjct: 61 DNSHGTHVAGTVAALNNSIGVLGVAPSSALYAVKVLGDAGSGQYSWIINGIEWAIANNMD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N+S+GGP VDK V G+ G T+ P VI VG
Sbjct: 121 VINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGSTGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNEN-TLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETPNFQDDNSHGTHVAGTVAAL 75
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 86/191 (45%), Gaps = 11/191 (5%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H N + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLN 310
HGT VAG + L AP A L+ +V SW ++ +AI MDV+N
Sbjct: 61 NNSHGTHVAGTV------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVIN 114
Query: 311 LSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
+S+GGP VDK V G G T+ P VI VG ++
Sbjct: 115 MSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDS 173
Query: 369 EDQIAKFSSRG 379
+Q A FSS G
Sbjct: 174 SNQRASFSSVG 184
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV D+G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 87/194 (44%), Gaps = 8/194 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV D+G+ S H + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD 307
HGT VAG +A+ S LG AP A L+ +V SW ++ +AI D
Sbjct: 61 NNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNXD 120
Query: 308 VLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
V+N S+GGP VDK V G G T+ P VI VG
Sbjct: 121 VINXSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGA 179
Query: 366 INFEDQIAKFSSRG 379
++ +Q A FSS G
Sbjct: 180 VDSSNQRASFSSVG 193
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGIKRIL 520
GS VKVAV D+G+ S H + +E N +D HGT VAG L
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL 75
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 39/264 (14%)
Query: 194 VPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDWT-N 244
VP + I++A +W +G+G + V DTG H ++AER TD+ +
Sbjct: 3 VPMGV-EIVEAPAVWRASAKGAGQIIGVIDTGCQVDHP---DLAERIIGGVNLTTDYGGD 58
Query: 245 ENTLEDKLGHGTFVAGLIASSQR---CLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYA 301
E D GHGT VAG +A+++ +G AP A+L I + + W A YA
Sbjct: 59 ETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYA 118
Query: 302 I------LKKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNN-- 353
+ ++M ++ +S+GGP + D V +N V ++ A GN+G N
Sbjct: 119 VDWRGPKGEQMRIITMSLGGPTDSE-ELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFA 177
Query: 354 -PADQMDVIGVGGINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTN-GE 411
PA +VI VG ++F+ +++ F++ T E+ DIV G ++ + G
Sbjct: 178 YPAAYNEVIAVGAVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLDSGY 225
Query: 412 CQYMWPYCTQPLYHGAIPIIVNVT 435
+ P GA+ +I+N+
Sbjct: 226 AELSGTAMAAPHVAGALALIINLA 249
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 466 SIRGSGVKVAVFDTGLSSGHTGFNNVAER--------TDWT-NENTLEDKLGHGTFVAG 515
S +G+G + V DTG H ++AER TD+ +E D GHGT VAG
Sbjct: 19 SAKGAGQIIGVIDTGCQVDHP---DLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAG 74
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 200 SILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFV 258
S ++A L G GS VKVAV D+G+ S H N + +E N +D HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHV 68
Query: 259 AGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDF 318
AG + L AP A L+ +V SW ++ +AI MDV+N+S+GGP
Sbjct: 69 AGTV------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 122
Query: 319 MDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
VDK V G G T+ P VI VG ++ +Q A FS
Sbjct: 123 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRASFS 181
Query: 377 SRG 379
S G
Sbjct: 182 SVG 184
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV D+G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 200 SILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFV 258
S ++A L G GS VKVAV D+G+ S H N + +E N +D HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHV 68
Query: 259 AGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDF 318
AG + L AP A L+ +V SW ++ +AI MDV+N+S+GGP
Sbjct: 69 AGTV------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 122
Query: 319 MDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
VDK V G G T+ P VI VG ++ +Q A FS
Sbjct: 123 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRASFS 181
Query: 377 SRG 379
S G
Sbjct: 182 SVG 184
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV D+G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 200 SILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFV 258
S ++A L G GS VKVAV D+G+ S H N + +E N +D HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHV 68
Query: 259 AGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDF 318
AG + L AP A L+ +V SW ++ +AI MDV+N+S+GGP
Sbjct: 69 AGTV------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 122
Query: 319 MDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
VDK V G G T+ P VI VG ++ +Q A FS
Sbjct: 123 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRASFS 181
Query: 377 SRG 379
S G
Sbjct: 182 SVG 184
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV D+G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGADGRGAISSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G +++ PA + + VG +
Sbjct: 120 ANLSLGSPS-PSATLEQAVNSATSRGVLVVAASGNSG--ASSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 11/191 (5%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLED 250
++VP ++ I +A L G GS VKVAV ++G+ S H N + +E N +D
Sbjct: 2 QSVPYGVSQI-KAPALHSQGYTGSNVKVAVINSGIDSSHPDLNVAGGASFVPSETNPFQD 60
Query: 251 KLGHGTFVAGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLN 310
HGT VAG + L AP A L+ +V SW ++ +AI MDV+N
Sbjct: 61 NNSHGTHVAGTV------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVIN 114
Query: 311 LSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
+S+GGP VDK V G G T+ P VI VG ++
Sbjct: 115 MSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDS 173
Query: 369 EDQIAKFSSRG 379
+Q A FSS G
Sbjct: 174 SNQRASFSSVG 184
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV ++G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVINSGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 80/183 (43%), Gaps = 10/183 (5%)
Query: 200 SILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFV 258
S ++A L G GS VKVAV D+G+ S H + +E N +D HGT V
Sbjct: 6 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPALKVAGGASFVPSETNPFQDNNSHGTHV 65
Query: 259 AGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDF 318
AG + L AP A L+ +V SW ++ +AI MDV+N+S+GGP
Sbjct: 66 AGTV------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 119
Query: 319 MDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
VDK V G G T+ P VI VG ++ +Q A FS
Sbjct: 120 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRASFS 178
Query: 377 SRG 379
S G
Sbjct: 179 SVG 181
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV D+G+ S H + +E N +D HGT VAG
Sbjct: 20 GSNVKVAVIDSGIDSSHPALKVAGGASFVPSETNPFQDNNSHGTHVAG 67
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 190 LLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLE 249
+ +TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E
Sbjct: 1 MAQTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNT 59
Query: 250 DKLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKM 306
D GHGT VAG +A+ + LG AP L+ +V + S + +A M
Sbjct: 60 DGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 119
Query: 307 DVLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVG 364
DV+N+S+GG VD + V GN G T+ PA VI VG
Sbjct: 120 DVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVG 178
Query: 365 GINFEDQIAKFSSRG 379
++ A FSS G
Sbjct: 179 AVDSNSNRASFSSVG 193
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 23 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 75
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
+TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 2 QTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDG 60
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG +A+ + LG AP L+ +V + S + +A MDV
Sbjct: 61 NGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDV 120
Query: 309 LNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI 366
+N+S+GG VD + V GN G T+ PA VI VG +
Sbjct: 121 INMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAV 179
Query: 367 NFEDQIAKFSSRG 379
+ A FSS G
Sbjct: 180 DSNSNRASFSSVG 192
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 22 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 74
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
+TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 2 QTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDG 60
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG +A+ + LG AP L+ +V + S + +A MDV
Sbjct: 61 NGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDV 120
Query: 309 LNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI 366
+N+S+GG VD + V GN G T+ PA VI VG +
Sbjct: 121 INMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAV 179
Query: 367 NFEDQIAKFSSRG 379
+ A FSS G
Sbjct: 180 DSNSNRASFSSVG 192
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 22 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 74
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
+TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 2 QTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDG 60
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG +A+ + LG AP L+ +V + S + +A MDV
Sbjct: 61 NGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDV 120
Query: 309 LNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI 366
+N+S+GG VD + V GN G T+ PA VI VG +
Sbjct: 121 INMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAV 179
Query: 367 NFEDQIAKFSSRG 379
+ A FSS G
Sbjct: 180 DSNSNRASFSSVG 192
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 22 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 74
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
+TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 2 QTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDG 60
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG +A+ + LG AP L+ +V + S + +A MDV
Sbjct: 61 NGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDV 120
Query: 309 LNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI 366
+N+S+GG VD + V G+ G T+ PA VI VG +
Sbjct: 121 INMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGSSGST-NTIGYPAKYDSVIAVGAV 179
Query: 367 NFEDQIAKFSSRG 379
+ A FSS G
Sbjct: 180 DSNSNRASFSSVG 192
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 22 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 74
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 190 LLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLE 249
+ +TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E
Sbjct: 1 MAQTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNT 59
Query: 250 DKLGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKM 306
D GHGT VAG +A+ + LG AP L+ +V + S + +A M
Sbjct: 60 DGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 119
Query: 307 DVLNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVG 364
DV+N+S+GG VD + V G+ G T+ PA VI VG
Sbjct: 120 DVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGSSGNT-NTIGYPAKYDSVIAVG 178
Query: 365 GINFEDQIAKFSSRG 379
++ A FSS G
Sbjct: 179 AVDSNSNRASFSSVG 193
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 23 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 75
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
+TVP I +++A+ + G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 2 QTVPYGI-PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDG 60
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG +A+ + LG AP L+ +V + S + +A MDV
Sbjct: 61 NGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDV 120
Query: 309 LNLSIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI 366
+N+S+GG VD + V G+ G T+ PA VI VG +
Sbjct: 121 INMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGSSGNT-NTIGYPAKYDSVIAVGAV 179
Query: 367 NFEDQIAKFSSRG 379
+ A FSS G
Sbjct: 180 DSNSNRASFSSVG 192
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 468 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+G+ VKVAV DTG+ + H N V + E D GHGT VAG L
Sbjct: 22 KGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAAL 74
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 127/272 (46%), Gaps = 35/272 (12%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNN-VAERTDWTN-ENTLEDKLGHGTFVA 259
+ A +W+LG GSG+ + + DTG+ + H V D+ N + T D GHGT VA
Sbjct: 126 VMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVA 185
Query: 260 GLIA-----SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKK----MDVLN 310
+ A S+ + G AP A+L +V Q S ++ ++A+ K + V+N
Sbjct: 186 SIAAGTGAASNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVIN 245
Query: 311 LSIGGPDFMD-----FPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGG 365
LS+G D V+ W+ A V++++A GN GP T+ +PA VI VG
Sbjct: 246 LSLGSSQSSDGTDSLSQAVNNAWD--AGLVVVVAA-GNSGPNKYTVGSPAAASKVITVGA 302
Query: 366 INFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTNGECQYMWPYCTQPL-- 423
++ D I FSSRG TA R+KP++V G+ + +G QP+
Sbjct: 303 VDKYDVITDFSSRGPTADN------RLKPEVVAPGNWIIAARASGTS------MGQPIND 350
Query: 424 YHGAIPIIVNVTILNGMGVVGKILE-RPKWYP 454
Y+ A P T + G+ +L+ P W P
Sbjct: 351 YYTAAPGTAMAT-PHVAGIAALLLQAHPSWTP 381
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 94/228 (41%), Gaps = 27/228 (11%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 260
++A L G GS VKVAV +G+ S H N + +E N +D HGT VAG
Sbjct: 11 IKAPALHSQGYTGSNVKVAVLASGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
Query: 261 LIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMD 320
+ L AP A L+ +V SW ++ +AI MDV+N+S+G P
Sbjct: 71 TV------LAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPSGSA 124
Query: 321 F--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSR 378
VDK V G G T++ PA VI VG ++ +Q A FSS
Sbjct: 125 ALKAAVDKAVASGVVVVAAAGNSGTSG-SSSTVSYPAKYPSVIAVGAVDSSNQRAPFSSV 183
Query: 379 G----------MTAWELPGG-YGRVKPDIVTYGSAVRGPSTNGECQYM 415
G LPGG YG + G+A+ P G +
Sbjct: 184 GPELDVMAPGVSICSTLPGGKYGALS------GTAMASPHVAGAAALI 225
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV +G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVLASGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 260
++A L G GS VKVAV +G+ S H N + +E N +D HGT VAG
Sbjct: 11 IKAPALHSQGYTGSNVKVAVLASGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
Query: 261 LIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMD 320
+ L AP A L+ +V SW ++ +AI MDV+N+S+G P
Sbjct: 71 TV------LAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPSGSA 124
Query: 321 F--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSR 378
VDK V G G T++ PA VI VG ++ +Q A FSS
Sbjct: 125 ALKAAVDKAVASGVVVVAAAGNSGTSG-SSSTVSYPAKYPSVIAVGAVDSSNQRAPFSSV 183
Query: 379 G 379
G
Sbjct: 184 G 184
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAG 515
GS VKVAV +G+ S H N + +E N +D HGT VAG
Sbjct: 23 GSNVKVAVLASGIDSSHPDLNVAGGASFVPSETNPFQDNNSHGTHVAG 70
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGV+VAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVRVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSYSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
+LS+ G V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ASLSL-GSPSPSATLEQAVNSATSRGVLVVAASGNSGA--GSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGV+VAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVRVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGV+VAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVRVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIAS---SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ S LG AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSYSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
+LS+ G V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ASLSL-GSPSPSATLEQAVNSATSRGVLVVAASGNSGA--GSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
+ GSGV+VAV DTG+S+ H N + E + +D GHGT VAG L
Sbjct: 21 LTGSGVRVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL 73
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 189 RLLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTN--- 244
R + +P I +I +TL GSG+ +AV DTG+++ H NNV + D+T
Sbjct: 1 RASQQIPWGIKAIYNNDTLTST-TGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATT 59
Query: 245 --ENTLEDKLGHGTFVAGLI----ASSQRCL-GFAPDAELHIFRVFTNQQVSYTSWFLDA 297
N+ D+ GHGT VAG S Q + G APDA+L ++V + Y+ A
Sbjct: 60 PINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAA 119
Query: 298 FNYAILKKM-----DVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLN 352
+A + ++++S+G V + V++++A GN G GT+
Sbjct: 120 IRHAADQATATGTKTIISMSLGSSANNSL-ISSAVNYAYSKGVLIVAAAGNSGYSQGTIG 178
Query: 353 NPADQMDVIGVGGI-----NFEDQIAKFSSRG 379
P + I V + N ++A +SSRG
Sbjct: 179 YPGALPNAIAVAALENVQQNGTYRVADYSSRG 210
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 458 HNGEFLEVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTN-----ENTLEDKLGHGT 511
+N + L + GSG+ +AV DTG+++ H NNV + D+T N+ D+ GHGT
Sbjct: 14 YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGT 73
Query: 512 FVAG 515
VAG
Sbjct: 74 HVAG 77
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 189 RLLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTN--- 244
R + +P I +I +TL GSG+ +AV DTG+++ H NNV + D+T
Sbjct: 1 RASQQIPWGIKAIYNNDTLTST-TGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATT 59
Query: 245 --ENTLEDKLGHGTFVAGLI----ASSQRCL-GFAPDAELHIFRVFTNQQVSYTSWFLDA 297
N+ D+ GHGT VAG S Q + G APDA+L ++V + Y+ A
Sbjct: 60 PINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAA 119
Query: 298 FNYAILKKM-----DVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLN 352
+A + ++++S+G V + V++++A GN G GT+
Sbjct: 120 IRHAADQATATGTKTIISMSLGSSANNSL-ISSAVNYAYSKGVLIVAAAGNSGYSQGTIG 178
Query: 353 NPADQMDVIGVGGI-----NFEDQIAKFSSRG 379
P + I V + N ++A +SSRG
Sbjct: 179 YPGALPNAIAVAALENVQQNGTYRVADYSSRG 210
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 458 HNGEFLEVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTN-----ENTLEDKLGHGT 511
+N + L + GSG+ +AV DTG+++ H NNV + D+T N+ D+ GHGT
Sbjct: 14 YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGT 73
Query: 512 FVAG 515
VAG
Sbjct: 74 HVAG 77
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 9/178 (5%)
Query: 208 WDLGIRGSGVKVAVFDTGLSSGHTGFNN-VAERTDWT-NENTLEDKLGHGTFVAGLIASS 265
WD+ SG ++AV DTG+ H + V + D+ N+ D HGT VAG+ A+
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAE 83
Query: 266 QR----CLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDF 321
G AP+ + R S DA YA +V+NLS+G D
Sbjct: 84 TNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLG-CDCHTT 142
Query: 322 PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
+ V ++++A GN+G T PA +VI VG ++ D++A FS+ G
Sbjct: 143 TLENAVNYAWNKGSVVVAAAGNNGS--STTFEPASYENVIAVGAVDQYDRLASFSNYG 198
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 211 GIRGSGVKVAVFDTGLSSG------HTGF-NNVAERTDWTNENTLEDKLGHGTFVAG-LI 262
G+ G G VAV DTGL +G H F + N D GHGT VAG ++
Sbjct: 18 GLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGSVL 77
Query: 263 ASSQRCLGFAPDAELHIFRVFTNQQV-------SYTSWFLDAFNYAILKKMDVLNLSIGG 315
+ G AP A L +F+ + + + F A++ + ++ G
Sbjct: 78 GNGSTNKGMAPQANL-VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNG 136
Query: 316 PDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI--------N 367
D VD + N + ++ A GN+GP GT++ P + I VG +
Sbjct: 137 AYTTDSRNVDDY--VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS 194
Query: 368 FEDQI---AKFSSRGMTAWELPGGYGRVKPDIVTYGS 401
+ D I A+FSSRG P GR+KPD++ G+
Sbjct: 195 YADNINHVAQFSSRG------PTKDGRIKPDVMAPGT 225
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 211 GIRGSGVKVAVFDTGLSSG------HTGF-NNVAERTDWTNENTLEDKLGHGTFVAG-LI 262
G+ G G VAV DTGL +G H F + N D GHGT VAG ++
Sbjct: 18 GLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGSVL 77
Query: 263 ASSQRCLGFAPDAELHIFRVFTNQQV-------SYTSWFLDAFNYAILKKMDVLNLSIGG 315
+ G AP A L +F+ + + + F A++ + ++ G
Sbjct: 78 GNGSTNKGMAPQANL-VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNG 136
Query: 316 PDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI--------N 367
D VD + N + ++ A GN+GP GT++ P + I VG +
Sbjct: 137 AYTTDSRNVDDY--VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS 194
Query: 368 FEDQI---AKFSSRGMTAWELPGGYGRVKPDIVTYGS 401
+ D I A+FSSRG P GR+KPD++ G+
Sbjct: 195 YADNINHVAQFSSRG------PTKDGRIKPDVMAPGT 225
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVA 259
+QA WD+ GSG K+A+ DTG+ S H V D+ N++T ++ GHGT A
Sbjct: 18 IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCA 76
Query: 260 GLIAS----SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGG 315
G+ A+ S G AP A + RV N + + YA + V++LS+GG
Sbjct: 77 GIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGG 136
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 468 RGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGIKRIL 520
GSG K+A+ DTG+ S H V D+ N++T ++ GHGT AGI +
Sbjct: 28 EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAV 82
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVA 259
+QA WD+ GSG K+A+ DTG+ S H V D+ N++T ++ GHGT A
Sbjct: 18 IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCA 76
Query: 260 GLIAS----SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGG 315
G+ A+ S G AP A + RV N + + YA + V++LS+GG
Sbjct: 77 GIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGG 136
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 468 RGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGIKRIL 520
GSG K+A+ DTG+ S H V D+ N++T ++ GHGT AGI +
Sbjct: 28 EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAV 82
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 35/193 (18%)
Query: 214 GSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-----NENTLEDKLGHGTFVAGLI----A 263
G+G+ +AV DTG+++ H NNV + D+T +N+ D+ GHGT VAG
Sbjct: 25 GAGINIAVLDTGVNTNHPDLSNNVEQCKDFTVGTNFTDNSCTDRQGHGTHVAGSALANGG 84
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYA-----ILKKMDVLNLSIGG--- 315
+ G AP+A+L ++V + Y +A +A L V+N+S+G
Sbjct: 85 TGSGVYGVAPEADLWAYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGE 144
Query: 316 ----PDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI----- 366
+ +D+ + DK V++I+A GN GP G++ P ++ + V +
Sbjct: 145 SSLITNAVDYAY-DK-------GVLIIAAAGNSGPKPGSIGYPGALVNAVAVAALENTIQ 196
Query: 367 NFEDQIAKFSSRG 379
N ++A FSSRG
Sbjct: 197 NGTYRVADFSSRG 209
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 448 ERPKWYPYLPHNGEFLEVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-----NEN 501
+ W +N L + G+G+ +AV DTG+++ H NNV + D+T +N
Sbjct: 4 QSTPWGIKAIYNNSNLTSTSGGAGINIAVLDTGVNTNHPDLSNNVEQCKDFTVGTNFTDN 63
Query: 502 TLEDKLGHGTFVAG 515
+ D+ GHGT VAG
Sbjct: 64 SCTDRQGHGTHVAG 77
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 52/226 (23%)
Query: 213 RGSGVKVAVFDTGLSSGHTGFNNV----------------AERTDWTNENTLEDKLGHGT 256
+ + K+A+ DTG+ H N E + + + + D+ GHGT
Sbjct: 120 KHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT 179
Query: 257 FVAGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGP 316
V+G +++ + +G AP+ + ++RVF +++ W A A V+N+S+G
Sbjct: 180 MVSGQTSANGKLIGVAPNNKFTMYRVFGSKKTELL-WVSKAIVQAANDGNQVINISVGSY 238
Query: 317 DFMD------FPFVDKVWELTA----------NRVILISAIGNDG--------------- 345
+D F +KV E A + I+++A GNDG
Sbjct: 239 IILDKNDHQTFRKDEKV-EYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREY 297
Query: 346 PLYGTLNN-PADQMDVIGVGGINFEDQIAKFSSRGMTAWEL--PGG 388
G + + PA +V+ VG + + +++FS+ GM ++ PGG
Sbjct: 298 QGNGEVKDVPASMDNVVTVGSTDQKSNLSEFSNFGMNYTDIAAPGG 343
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 52/226 (23%)
Query: 213 RGSGVKVAVFDTGLSSGHTGFNNV----------------AERTDWTNENTLEDKLGHGT 256
+ + K+A+ DTG+ H N E + + + + D+ GHGT
Sbjct: 144 KHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT 203
Query: 257 FVAGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGP 316
V+G +++ + +G AP+ + ++RVF +++ W A A V+N+S+G
Sbjct: 204 MVSGQTSANGKLIGVAPNNKFTMYRVFGSKKTELL-WVSKAIVQAANDGNQVINISVGSY 262
Query: 317 DFMD------FPFVDKVWELTA----------NRVILISAIGNDG--------------- 345
+D F +KV E A + I+++A GNDG
Sbjct: 263 IILDKNDHQTFRKDEKV-EYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREY 321
Query: 346 PLYGTLNN-PADQMDVIGVGGINFEDQIAKFSSRGMTAWEL--PGG 388
G + + PA +V+ VG + + +++FS+ GM ++ PGG
Sbjct: 322 QGNGEVKDVPASMDNVVTVGSTDQKSNLSEFSNFGMNYTDIAAPGG 367
>pdb|3M0C|B Chain B, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 546
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|3BPS|A Chain A, Pcsk9:egf-a Complex
pdb|3GCW|A Chain A, Pcsk9:egfa(H306y)
pdb|3GCX|A Chain A, Pcsk9:egfa (Ph 7.4)
pdb|3SQO|A Chain A, Pcsk9 J16 Fab Complex
Length = 540
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2QTW|B Chain B, The Crystal Structure Of Pcsk9 At 1.9 Angstroms Resolution
Reveals Structural Homology To Resistin Within The
C-Terminal Domain
Length = 546
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2PMW|B Chain B, The Crystal Structure Of Proprotein Convertase Subtilisin
Kexin Type 9 (Pcsk9)
Length = 540
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|3H42|B Chain B, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 540
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|3P5B|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
pdb|3P5C|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 540
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2P4E|P Chain P, Crystal Structure Of Pcsk9
pdb|2P4E|A Chain A, Crystal Structure Of Pcsk9
Length = 692
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 177 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 234
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 235 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 289
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 290 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 345
Query: 373 AKFSSRG 379
+ G
Sbjct: 346 VTLGTLG 352
>pdb|2W2P|A Chain A, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
Length = 312
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2W2Q|A Chain A, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 312
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2W2O|A Chain A, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
Length = 312
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2W2M|A Chain A, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2N|A Chain A, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 312
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|2XTJ|A Chain A, The Crystal Structure Of Pcsk9 In Complex With 1d05 Fab
Length = 312
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 214 GSGVKVAVFDTGLSSGH---------TGFNNVAERTDWTNENTLEDKL-GHGTFVAGLIA 263
GS V+V + DT + S H T F NV E D T + K HGT +AG++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEE-DGTRFHRQASKCDSHGTHLAGVV- 82
Query: 264 SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPF 323
S R G A A + RV Q S L + ++K ++ GP + P
Sbjct: 83 -SGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEF--IRKSQLVQPV--GPLVVLLPL 137
Query: 324 V---DKVWELTANR-----VILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQI 372
+V R V+L++A GN D LY +PA +VI VG N +DQ
Sbjct: 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQDQP 193
Query: 373 AKFSSRG 379
+ G
Sbjct: 194 VTLGTLG 200
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 61/256 (23%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGF------------------ 233
K R + Q TL + +G+G VAV D G H +
Sbjct: 3 KATIRDLNDPSQVKTLQEKASKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEK 62
Query: 234 --------------NNVAERTDWTNENTLEDKLGHGTFVAGLIASSQ--------RCLGF 271
+ VA D++ + HGT V+G+++ + R G
Sbjct: 63 AKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGA 122
Query: 272 APDAELHIFRV-FTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGP--DFMDFP-FVDKV 327
P+A+L + RV N Y + A A+ V+N+S G + + P K
Sbjct: 123 MPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKA 182
Query: 328 WELTANR-VILISAIGNDG-------------PLYGTLNNPADQMDVIGVGGINFEDQI- 372
++ ++ V ++++ GND P YG + PA + V + + Q+
Sbjct: 183 FDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT 242
Query: 373 --AKFSSRGMTAWELP 386
A + A E+P
Sbjct: 243 ETATVKTDDHQAKEMP 258
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 246 NTLEDKLGHGTFVAGLIA------------SSQRCLGFAPDAELHIFRVFTNQQVSYTSW 293
N+ D GHGT A + A + G AP A L +++ F+ + ++TS
Sbjct: 95 NSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYK-FSFNEGTFTSD 153
Query: 294 FLDAFNYAILKKMDVLNLSIGGPDFMDFPFVDKVWELTA-----NRVILISAIGNDGPLY 348
+ A + A+ +D++++S G + P + + + V++ ++ GN GP
Sbjct: 154 LIAAMDQAVADGVDMISISYG---YRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGI 210
Query: 349 GTLNN 353
G+LNN
Sbjct: 211 GSLNN 215
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
GSG V DTG+ + H F A + D GHGT AG I S + G A
Sbjct: 32 GSGTCAYVIDTGVEASHPEFEGRASQIKSFISGQNTDGNGHGTHCAGTIGS--KTYGVAK 89
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAI-------LKKMDVLNLSIGG 315
+++ +V N S + ++A+ K V N+S+GG
Sbjct: 90 KTKIYGVKVLDNSGSGSYSGIISGMDFAVQDSKSRSCPKGVVANMSLGG 138
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 211 GIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAGLI 262
G+ G GV VAV D GL+ H G NV T + + HGT V+G+I
Sbjct: 66 GVLGQGVNVAVVDDGLAIAHPDLADNVRPGSKNVV--TGSDDPTPTDPDTAHGTSVSGII 123
Query: 263 ASSQRCL---GFAPDAELHIFRVF-TNQQVSYTSWFLDAFNYAILKKMDVLNLSIG---- 314
A+ + G AP A+L F + N Q W + + V N S G
Sbjct: 124 AAVDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVV 183
Query: 315 ---GPDFMDFPFVDKVWE---LTANRVILISAIGN 343
+ +D +D+++E L A I A GN
Sbjct: 184 DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGN 218
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G G V V DTG+ + H F A+ T + D GHGT AG + S R G A
Sbjct: 30 GQGSCVYVIDTGIEASHPEFEGRAQMVK-TYYYSSRDGNGHGTHCAGTVGS--RTYGVAK 86
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD-------VLNLSIGGPDFMDFPFVDK 326
+L +V + S + ++ K + V +LS+GG
Sbjct: 87 KTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG--YSSSVNSA 144
Query: 327 VWELTANRVILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
L ++ V++ A GN D Y +PA + V VG + D+ + FS+ G
Sbjct: 145 AARLQSSGVMVAVAAGNNNADARNY----SPASEPSVCTVGASDRYDRRSSFSNYG 196
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G G V V DTG+ + H F A+ T + D GHGT AG + S R G A
Sbjct: 30 GQGSCVYVIDTGIEASHPEFEGRAQMVK-TYYYSSRDGNGHGTHCAGTVGS--RTYGVAK 86
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD-------VLNLSIGGPDFMDFPFVDK 326
+L +V + S + ++ K + V +LS+GG
Sbjct: 87 KTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG--YSSSVNSA 144
Query: 327 VWELTANRVILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
L ++ V++ A GN D Y +PA + V VG + D+ + FS+ G
Sbjct: 145 AARLQSSGVMVAVAAGNNNADARNY----SPASEPSVCTVGASDRYDRRSSFSNYG 196
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 214 GSGVKVAVFDTGLSSGHTGFN--NVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGF 271
G GV V DTG+++ H F +V+ N+ D GHGT VAG I SQ G
Sbjct: 28 GFGVTAYVIDTGVNNNHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAGTIGGSQ--YGV 85
Query: 272 APDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKM--DVLNLSIGG 315
A + + RV + TS + ++ V N+S+GG
Sbjct: 86 AKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGG 131
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 66/171 (38%), Gaps = 9/171 (5%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERT-DWT-NENTLEDKLGHGTFVAGLIASSQRCLGF 271
GSGV V DTG+ + H F A D+ N+ D GHGT VAG I S G
Sbjct: 30 GSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYDATDCNGHGTHVAGTIGGST--YGV 87
Query: 272 APDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD--VLNLSIGGPDFMDFPFVDKVWE 329
A + + RV S + N+ V N+S+GG D V
Sbjct: 88 AKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGG--ASQATDDAVNA 145
Query: 330 LTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRGM 380
A + + A GND +PA D I VG D + FS+ G
Sbjct: 146 AVAAGITFVVAAGNDNSNACNY-SPARAADAITVGSTTSNDSRSSFSNYGT 195
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 13/173 (7%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G+G V V DTG+ H F A++ + +T D GHGT AG I S + G A
Sbjct: 31 GAGACVYVIDTGVEDTHPDFEGRAKQIK-SYASTARDGHGHGTHCAGTIGS--KTWGVAK 87
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD-------VLNLSIGGPDFMDFPFVDK 326
+ +V + S + ++ + V ++S+GG
Sbjct: 88 KVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--YSAALNQA 145
Query: 327 VWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
L ++ V + A GND +PA + V VG + D + FS+ G
Sbjct: 146 AARLQSSGVFVAVAAGNDNRDAAN-TSPASEPTVCTVGATDSNDVRSTFSNYG 197
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 58/230 (25%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGF----------------------------- 233
Q TL + +G+G VAV D G H +
Sbjct: 5 QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGE 64
Query: 234 ---NNVAERTDWTNENTLEDKLGHGTFVAGLIASSQ--------RCLGFAPDAELHIFRV 282
+ VA D++ + HGT V+G+++ + R G P+A+L + RV
Sbjct: 65 WVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAXPEAQLLLXRV 124
Query: 283 -FTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGP--DFMDFP-FVDKVWELTANR-VIL 337
N Y + A AI V+N S G + + P K ++ ++ V +
Sbjct: 125 EIVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSI 184
Query: 338 ISAIGNDG-------------PLYGTLNNPADQMDVIGVGGINFEDQIAK 374
+++ GND P YG + PA + V + + Q+ +
Sbjct: 185 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTE 234
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G GV V V DTG+ + H F A +D GHGT VAG I G A
Sbjct: 30 GRGVNVYVIDTGIRTTHREFGGRARVGYDALGGNGQDCNGHGTHVAGTIGGVT--YGVAK 87
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAIL--KKMDVLNLSIGG 315
L+ RV TS + ++ ++ V N+S+GG
Sbjct: 88 AVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGG 131
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G G V V DTG+ + H F A+ T + D GHGT AG + S R G
Sbjct: 30 GQGSCVYVIDTGIEASHPEFEGRAQMVK-TYYYSSRDGNGHGTHCAGTVGS--RTYGVVK 86
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMD-------VLNLSIGGPDFMDFPFVDK 326
+L +V + S + ++ K + V +LS+GG
Sbjct: 87 KTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG--YSSSVNSA 144
Query: 327 VWELTANRVILISAIGN---DGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
L ++ V++ A GN D Y +PA + V VG + D+ + FS+ G
Sbjct: 145 AARLQSSGVMVAVAAGNNNADARNY----SPASEPSVCTVGASDRYDRRSSFSNYG 196
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 246 NTLEDKLGHGTFVA-----GLIASSQ-------RCLGFAPDAELHIFRVFTNQQVSYTSW 293
N D GHGT A GL++ + G P A + ++V N S T
Sbjct: 86 NGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTD- 144
Query: 294 FLDAFNYAILKKMDVLNLSIGGPDFMDFPFVDKV----WELTANRVILISAIGNDGPLYG 349
L A++ AI +D+++LS+GG + + FVD + + ++ ++ GN GP +
Sbjct: 145 ILAAYDDAIADGVDIISLSVGGANPRHY-FVDAIAIGSFHAVERGILTSNSAGNGGPNFF 203
Query: 350 T 350
T
Sbjct: 204 T 204
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 55/228 (24%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGL-----------------------SSGHTGFNNVAE 238
++AN +WD G G GV V+V DTG+ G NN A+
Sbjct: 20 VKANKVWDRGFTGQGVVVSVVDTGILDHVDLNGNMLPGYDFISSAPNARDGDQRDNNPAD 79
Query: 239 RTDWTN--------ENTLEDKLG--HGTFVAGLIASSQR----CLGFAPDAELHIFRVFT 284
DW + + E K HG+ VAG IA+ G A A++ RV
Sbjct: 80 EGDWFDNWDCGGYPDPRREKKFSTWHGSHVAGTIAAVTNNGVGVAGVAYGAKVIPVRVL- 138
Query: 285 NQQVSYTSWFLDAFNYAILKKMD----------VLNLSIGGPDFMDFP---FVDKVWELT 331
+ Y S D ++ +D V+N+S+GG +DK L
Sbjct: 139 GKCGGYDSDITDGMYWSAGGHIDGVPDNQNPAQVVNMSLGGGGGCSQNSQRMIDKTTNLG 198
Query: 332 ANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
A +++ A GN+ + P+ +V+ VG + + A FS+ G
Sbjct: 199 A---LIVIAAGNEN-QDASRTWPSSCNNVLSVGATTPKGKRAPFSNYG 242
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 55/228 (24%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGL-----------------------SSGHTGFNNVAE 238
++A+ +WD G G GV V+V DTG+ G NN A+
Sbjct: 20 VKADKVWDRGFTGQGVVVSVVDTGILDHVDLNGNMLPGYDFISSAPKARDGDQRDNNPAD 79
Query: 239 RTDWTN--------ENTLEDKLG--HGTFVAGLIASSQR----CLGFAPDAELHIFRVFT 284
DW + + E + HG+ VAG IA+ G A A++ RV
Sbjct: 80 EGDWFDNWDCGGYPDPRREKRFSTWHGSHVAGTIAAVTNNGVGVAGVAYGAKVIPVRVL- 138
Query: 285 NQQVSYTSWFLDAFNYAILKKMD----------VLNLSIGGPDFMDFP---FVDKVWELT 331
+ Y S D ++ +D V+N+S+GG +DK L
Sbjct: 139 GKCGGYDSDITDGMYWSAGGHIDGVPDNQNPAQVINMSLGGDGDCSQSSQRIIDKTTNLG 198
Query: 332 ANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
A +++ A GN+ + P+ +V+ VG + + A FS+ G
Sbjct: 199 A---LIVIAAGNEN-QDASRTWPSSCNNVLSVGATTPKGKRAPFSNYG 242
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 414 YMWPYCTQPLYHGAIPIIVNVTI-LNGMG-VVGKIL 447
+M PYC QPL GA ++ +VT +NG G V+G I+
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGII 223
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 414 YMWPYCTQPLYHGAIPIIVNVTI-LNGMG-VVGKIL 447
+M PYC QPL GA ++ +VT +NG G V+G I+
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGII 223
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 414 YMWPYCTQPLYHGAIPIIVNVTI-LNGMG-VVGKIL 447
+M PYC QPL GA ++ +VT +NG G V+G I+
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGII 223
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 414 YMWPYCTQPLYHGAIPIIVNVTI-LNGMG-VVGKIL 447
+M PYC QPL GA ++ +VT +NG G V+G I+
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGII 223
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGL 226
++A+ +WD+G G V VAV DTG+
Sbjct: 19 VKADKVWDMGFTGQNVVVAVVDTGI 43
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGL 226
++A+ +WD+G G V VAV DTG+
Sbjct: 19 VKADKVWDMGFTGQNVVVAVVDTGI 43
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGL 226
++A+ +WD+G G V VAV DTG+
Sbjct: 19 VKADKVWDMGFTGQNVVVAVVDTGI 43
>pdb|2CZ4|A Chain A, Crystal Structure Of A Putative Pii-Like Signaling Protein
(Ttha0516) From Thermus Thermophilus Hb8
pdb|2CZ4|B Chain B, Crystal Structure Of A Putative Pii-Like Signaling Protein
(Ttha0516) From Thermus Thermophilus Hb8
pdb|2CZ4|C Chain C, Crystal Structure Of A Putative Pii-Like Signaling Protein
(Ttha0516) From Thermus Thermophilus Hb8
Length = 119
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 100 SDFDVVLLEEVTAALSSLLEHPLIKRVTPQRLVHRSLQFIPEQRHGSEGVKDEDGSEG-- 157
S D+V L+ VT SLLE L++ V +RL + P + GS G++ D EG
Sbjct: 18 SHXDLVPLKLVTIVAESLLEKRLVEEV--KRLGAKGYTITPARGEGSRGIRSVDW-EGQN 74
Query: 158 ------VEKEADVRPLRR 169
V +E +R L+R
Sbjct: 75 IRLETIVSEEVALRILQR 92
>pdb|1FFT|A Chain A, The Structure Of Ubiquinol Oxidase From Escherichia Coli
pdb|1FFT|F Chain F, The Structure Of Ubiquinol Oxidase From Escherichia Coli
Length = 663
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 30/157 (19%)
Query: 257 FVAGLIASSQRCLGFAPDAEL----HIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLS 312
F ++ SQ+ L A +A H ++FT V F A + I V+ L
Sbjct: 73 FADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMI--FFVAMPFVIGLMNLVVPLQ 130
Query: 313 IGGPDFMDFPFVDKV-WELTANRVILISAIGNDG-----------PLYGTLNNPADQMD- 359
IG D + FPF++ + + T VIL++ G PL G +P +D
Sbjct: 131 IGARD-VAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDY 189
Query: 360 ------VIGVG----GINFEDQIAKFSSRGMTAWELP 386
+ G+G GINF I K + GMT +++P
Sbjct: 190 WIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMP 226
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 304 KKMDVLNLSIGGPDFMDFPFVDKVWEL---TANR--VILISAIGNDGPLYGTLNNPAD-- 356
+++DV+N S G + ++ ++ EL N+ V+ +++ GN GP T+ P D
Sbjct: 332 RRIDVINXSYG--EHANWSNSGRIGELXNEVVNKYGVVWVASAGNHGPALCTVGTPPDIS 389
Query: 357 QMDVIGVGG-INFEDQIAKFSSRGMTAWELPG 387
Q +IGVG ++ + A+++ R +LPG
Sbjct: 390 QPSLIGVGAYVSPQXXEAEYAMR----EKLPG 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,534,383
Number of Sequences: 62578
Number of extensions: 837125
Number of successful extensions: 2041
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 202
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)