RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15698
(577 letters)
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 154 bits (390), Expect = 2e-41
Identities = 62/252 (24%), Positives = 93/252 (36%), Gaps = 34/252 (13%)
Query: 199 TSILQANTLWD-LGIRGSGVKVAVFDTGLSSGHTGF-------NNVAERTDWTNENTLED 250
I++A+ G+ G G VAV DTGL +G + N D
Sbjct: 5 RGIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNAND 64
Query: 251 KLGHGTFVAGLIASS-QRCLGFAPDAELHIFRVFTNQ--QVSYTSWFLDAFNYAILKKMD 307
GHGT VAG + + G AP A L + + S F+ A
Sbjct: 65 TNGHGTHVAGSVLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGAR 124
Query: 308 VLNLSIG----GPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGV 363
+ S G G D VD N + ++ A GN+GP GT++ P + I V
Sbjct: 125 IHTNSWGAAVNGAYTTDSRNVDDYV--RKNDMTILFAAGNEGPNGGTISAPGTAKNAITV 182
Query: 364 G-----------GINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTNGEC 412
G + + +A+FSSRG P GR+KPD++ G+ + ++
Sbjct: 183 GATENLRPSFGSYADNINHVAQFSSRG------PTKDGRIKPDVMAPGTFILSARSSLAP 236
Query: 413 QYMWPYCTQPLY 424
+ Y
Sbjct: 237 DSSFWANHDSKY 248
Score = 56.9 bits (137), Expect = 8e-09
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 467 IRGSGVKVAVFDTGLSSGHTGF-------NNVAERTDWTNENTLEDKLGHGTFVAGI 516
+ G G VAV DTGL +G + N D GHGT VAG
Sbjct: 19 LYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGS 75
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 144 bits (364), Expect = 3e-37
Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 19/214 (8%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAG 260
A +W+LG GSG+ + + DTG+ + H V D+ + T D GHGT VA
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVAS 186
Query: 261 LIA-----SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKK----MDVLNL 311
+ A S+ + G AP A+L +V Q S ++ ++A+ K + V+NL
Sbjct: 187 IAAGTGAASNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINL 246
Query: 312 SIGGPDFMDF--PFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFE 369
S+G D V ++++ A GN GP T+ +PA VI VG ++
Sbjct: 247 SLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY 306
Query: 370 DQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAV 403
D I FSSRG P R+KP++V G+ +
Sbjct: 307 DVITDFSSRG------PTADNRLKPEVVAPGNWI 334
Score = 54.9 bits (132), Expect = 4e-08
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGI 516
+ GSG+ + + DTG+ + H V D+ + T D GHGT VA I
Sbjct: 133 NLGYDGSGITIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVASI 187
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 146 bits (370), Expect = 4e-37
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 40/242 (16%)
Query: 208 WDLGIRGSGVKVAVFD-TGLSSGHTGFNN--VAERTDWTNENTLEDKLGHGTFVAGLIA- 263
+ G +++ + T + F + V + + HGT V+ + +
Sbjct: 223 TEQGDLDQALRIGEYSRTHETRNVDDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASG 282
Query: 264 --SSQRCLGFAPDAELHIFRVFTNQ--QVSYTSWFLDAFNYAI-----LKKMDVLNLSIG 314
SS+ G AP+A++ + + + + + A + +++DV+N+S G
Sbjct: 283 NHSSRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYG 342
Query: 315 GP-DFMDFPFVDKVWELTANR--VILISAIGNDGPLYGTLNNPAD--QMDVIGVGGIN-- 367
++ + + ++ N+ V+ +++ GN GP T+ P D Q +IGVG
Sbjct: 343 EHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSP 402
Query: 368 ------------FEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRG--PSTNGECQ 413
+ ++SR P G + G A+ T + Q
Sbjct: 403 QMMEAEYAMREKLPGNVYTWTSRD------PCIDGGQGVTVCAPGGAIASVPQFTMSKSQ 456
Query: 414 YM 415
M
Sbjct: 457 LM 458
Score = 47.5 bits (112), Expect = 1e-05
Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 29/208 (13%)
Query: 388 GYGRV---------KPDIVTYGSAVRGPSTNGECQYMWPYCTQPLYHGAIPIIVNVTI-- 436
G+G + + + +R G + Q + +I V +
Sbjct: 511 GHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVYIEPIF 570
Query: 437 LNGMGVVGKILERPKWYPYLPHN------GEFLEVSIRGSGVKVAVFDTGLSSG-HTGF- 488
N K L + G FL++S + V V TGL G H+
Sbjct: 571 YNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQPGVHSAVI 630
Query: 489 -----NNVAERTDWTNENT--LEDKLGHGTFVAGIKRILWDQYHNLRYPQGYFPRDNLKM 541
+ V + + + T L + +++ + RD + +
Sbjct: 631 RAYDTDCVQKGSLFEIPVTVVQPHVLESDQNTPVFEPASSKGDNSVEFQPNTIQRDFILV 690
Query: 542 KNDPLDWNGDHVHTNFKYEQRKAPSDWF 569
P + R F
Sbjct: 691 ---PERATWAELRMRITDPNRGEDIGKF 715
Score = 34.8 bits (79), Expect = 0.081
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 450 PKWYPYLPHNGE----FLEVSIRGS-GVKVAVFDTGLSSGHTGFNN-VAERTDWTNE--- 500
+ L + ++ + +G + + + + ++ ++ + +E
Sbjct: 203 TSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDFLSISVNVHDEGNV 262
Query: 501 -NTLEDKLGHGTFVAGI 516
+ HGT V+ I
Sbjct: 263 LEVVGMSSPHGTHVSSI 279
Score = 31.0 bits (69), Expect = 1.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 197 QITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTG 232
+ + LQ +D G V +A+FD+G+ TG
Sbjct: 22 GVLNFLQKYPEYD----GRDVTIAIFDSGVDPRATG 53
Score = 29.4 bits (65), Expect = 3.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 469 GSGVKVAVFDTGLSSGHTG 487
G V +A+FD+G+ TG
Sbjct: 35 GRDVTIAIFDSGVDPRATG 53
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 138 bits (349), Expect = 4e-37
Identities = 62/192 (32%), Positives = 87/192 (45%), Gaps = 7/192 (3%)
Query: 193 TVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKL 252
TVP I I +A+ + G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 3 TVPYGIPLI-KADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGN 61
Query: 253 GHGTFVAGLIASSQRCLGF---APDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVL 309
GHGT VAG +A+ G AP L+ +V + S + +A MDV+
Sbjct: 62 GHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVI 121
Query: 310 NLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGP--LYGTLNNPADQMDVIGVGGIN 367
N+S+GG V A V++++A GN G T+ PA VI VG ++
Sbjct: 122 NMSLGGASGST-AMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD 180
Query: 368 FEDQIAKFSSRG 379
A FSS G
Sbjct: 181 SNSNRASFSSVG 192
Score = 54.1 bits (131), Expect = 3e-08
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
+G+ VKVAV DTG+ + H N V + E D GHGT VAG
Sbjct: 18 AQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGT 70
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 137 bits (347), Expect = 8e-37
Identities = 63/193 (32%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 193 TVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAER-TDWTNENTLEDK 251
+VP ++ I +A L G GS VKVAV D+G+ S H + N +D
Sbjct: 3 SVPYGVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDN 61
Query: 252 LGHGTFVAGLIASSQRCLGF---APDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
HGT VAG +A+ +G AP A L+ +V SW ++ +AI MDV
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDV 121
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGP--LYGTLNNPADQMDVIGVGGI 366
+N+S+GGP V + A+ V++++A GN+G T+ P VI VG +
Sbjct: 122 INMSLGGPSGSA-ALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAV 180
Query: 367 NFEDQIAKFSSRG 379
+ +Q A FSS G
Sbjct: 181 DSSNQRASFSSVG 193
Score = 51.8 bits (125), Expect = 2e-07
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGFNNVAER-TDWTNENTLEDKLGHGTFVAGI 516
GS VKVAV D+G+ S H + N +D HGT VAG
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGT 71
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 134 bits (341), Expect = 4e-36
Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 8/191 (4%)
Query: 192 KTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDK 251
++VP I+ + QA + G+ GSGVKVAV DTG+S+ H N + E + +D
Sbjct: 2 QSVPWGISRV-QAPAAHNRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDG 59
Query: 252 LGHGTFVAGLIASSQRCLGF---APDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDV 308
GHGT VAG IA+ +G AP AEL+ +V S +A M V
Sbjct: 60 NGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHV 119
Query: 309 LNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINF 368
NLS+G P V T+ V++++A GN G G+++ PA + + VG +
Sbjct: 120 ANLSLGSPSPSA-TLEQAVNSATSRGVLVVAASGNSGA--GSISYPARYANAMAVGATDQ 176
Query: 369 EDQIAKFSSRG 379
+ A FS G
Sbjct: 177 NNNRASFSQYG 187
Score = 51.4 bits (124), Expect = 2e-07
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG
Sbjct: 18 NRGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGT 69
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 129 bits (326), Expect = 1e-33
Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 22/216 (10%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTL-----EDKLGHGT 256
N GSG+ +AV DTG+++ H NNV + D+T T D+ GHGT
Sbjct: 14 YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGT 73
Query: 257 FVAGLIA-----SSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAI-----LKKM 306
VAG G APDA+L ++V + Y+ A +A
Sbjct: 74 HVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTK 133
Query: 307 DVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGI 366
++++S+G V + V++++A GN G GT+ P + I V +
Sbjct: 134 TIISMSLGSSANNS-LISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAAL 192
Query: 367 NFEDQ-----IAKFSSRGMTAWELPGGYGRVKPDIV 397
Q +A +SSRG + +I
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEIS 228
Score = 50.4 bits (121), Expect = 6e-07
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTL-----EDKLGHGTFVAGI 516
+ GSG+ +AV DTG+++ H NNV + D+T T D+ GHGT VAG
Sbjct: 20 TSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAGT 78
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 123 bits (312), Expect = 1e-31
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 24/209 (11%)
Query: 191 LKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDW 242
L VP + + +A +W +G+G + V DTG H G N +
Sbjct: 18 LSEVPMGVEIV-EAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGG- 75
Query: 243 TNENTLEDKLGHGTFVAGLIASSQRCLGF---APDAELHIFRVFTNQQVSYTSWFLDAFN 299
+E D GHGT VAG +A+++ G AP A+L I + + W A
Sbjct: 76 -DETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIR 134
Query: 300 YAI------LKKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDG---PLYGT 350
YA+ ++M ++ +S+GGP + D V +N V ++ A GN+G
Sbjct: 135 YAVDWRGPKGEQMRIITMSLGGPTDSE-ELHDAVKYAVSNNVSVVCAAGNEGDGREDTNE 193
Query: 351 LNNPADQMDVIGVGGINFEDQIAKFSSRG 379
PA +VI VG ++F+ +++ F++
Sbjct: 194 FAYPAAYNEVIAVGAVDFDLRLSDFTNTN 222
Score = 50.4 bits (121), Expect = 7e-07
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 515
S +G+G + V DTG H G N + +E D GHGT VAG
Sbjct: 35 RASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGG--DETNFSDNNGHGTHVAG 92
Query: 516 I 516
Sbjct: 93 T 93
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 121 bits (305), Expect = 5e-31
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAG 260
QA WD+ GSG K+A+ DTG+ S H V D+ N++T ++ GHGT AG
Sbjct: 19 QAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAG 77
Query: 261 LIAS----SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGP 316
+ A+ S G AP A + RV N + + YA + V++LS+GG
Sbjct: 78 IAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGT 137
Query: 317 DFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
+ V ++++A GN G N PA + I V + D + FS
Sbjct: 138 VG-NSGLQQAVNYAWNKGSVVVAAAGNAGN--TAPNYPAYYSNAIAVASTDQNDNKSSFS 194
Query: 377 SRG 379
+ G
Sbjct: 195 TYG 197
Score = 49.8 bits (120), Expect = 9e-07
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 468 RGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGI 516
GSG K+A+ DTG+ S H V D+ N++T ++ GHGT AGI
Sbjct: 28 EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAGI 78
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 120 bits (304), Expect = 7e-31
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 9/183 (4%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAG 260
+ WD+ SG ++AV DTG+ H V + D+ N+ D HGT VAG
Sbjct: 19 YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAG 78
Query: 261 LIAS----SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGP 316
+ A+ + G AP+ + R S DA YA +V+NLS+G
Sbjct: 79 IAAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCD 138
Query: 317 DFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
+ V ++++A GN+G T PA +VI VG ++ D++A FS
Sbjct: 139 CHTT-TLENAVNYAWNKGSVVVAAAGNNGS--STTFEPASYENVIAVGAVDQYDRLASFS 195
Query: 377 SRG 379
+ G
Sbjct: 196 NYG 198
Score = 46.8 bits (112), Expect = 8e-06
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGI 516
+V+ SG ++AV DTG+ H V + D+ N+ D HGT VAGI
Sbjct: 25 DVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGI 79
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 114 bits (288), Expect = 2e-28
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 202 LQANTLWDLGI-RGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKL 252
++A ++W + S ++VAV DTG+ H + + + T D+
Sbjct: 15 VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVS-TKLRDCADQN 73
Query: 253 GHGTFVAGLIASSQRCLGF---APDAELHIFRVFTNQQVSYTSWFLDAFNYAIL------ 303
GHGT V G IA+ +G AP +++ RV + S AIL
Sbjct: 74 GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVA 133
Query: 304 --------------KKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYG 349
+V+++S+GGP D D + + +++++A GN+G
Sbjct: 134 DKDGDGIIAGDPDDDAAEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGA--P 190
Query: 350 TLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
+ + PA +VI VG I+ D IA FS+R
Sbjct: 191 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQ 220
Score = 48.5 bits (116), Expect = 3e-06
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 468 RGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
S ++VAV DTG+ H + + + T D+ GHGT V G
Sbjct: 27 SVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVS-TKLRDCADQNGHGTHVIGT 82
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 116 bits (293), Expect = 4e-28
Identities = 52/265 (19%), Positives = 98/265 (36%), Gaps = 57/265 (21%)
Query: 208 WDLGIRGSGVKVAVFDTGLSSGH----------------TGFNNVAERTDWTNENTLEDK 251
+D + + K+A+ DTG+ H E + + + + D+
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDR 198
Query: 252 LGHGTFVAGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNL 311
GHGT V+G +++ + +G AP+ + ++RVF + + W A A V+N+
Sbjct: 199 KGHGTMVSGQTSANGKLIGVAPNNKFTMYRVF-GSKKTELLWVSKAIVQAANDGNQVINI 257
Query: 312 SIGGPDFMDFPFVDKVWELTANR---------------VILISAIGNDGPLYGTLNN--- 353
S+G +D + I+++A GNDG
Sbjct: 258 SVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKL 317
Query: 354 -------------PADQMDVIGVGGINFEDQIAKFSSRGMTAWEL--PGG-------YGR 391
PA +V+ VG + + +++FS+ GM ++ PGG +G
Sbjct: 318 QREYQGNGEVKDVPASMDNVVTVGSTDQKSNLSEFSNFGMNYTDIAAPGGSFAYLNQFGV 377
Query: 392 VKPDIVTYGSAVRGPSTNGECQYMW 416
K Y +T +Y++
Sbjct: 378 DKWMNEGYMHKENILTTANNGRYIY 402
Score = 46.4 bits (110), Expect = 2e-05
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 468 RGSGVKVAVFDTGLSSGH----------------TGFNNVAERTDWTNENTLEDKLGHGT 511
+ + K+A+ DTG+ H E + + + + D+ GHGT
Sbjct: 144 KHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT 203
Query: 512 FVAGI 516
V+G
Sbjct: 204 MVSGQ 208
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 112 bits (282), Expect = 7e-27
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 24/201 (11%)
Query: 193 TVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTN 244
T P T + A L D + + + D+G H TG NN N
Sbjct: 3 TTPWGQTFV-GATVLSD--SQAGNRTICIIDSGYDRSHNDLNANNVTGTNNS----GTGN 55
Query: 245 ENTLEDKLGHGTFVAGLIASS---QRCLGFAP--DAELHIFRVFTNQQVSYTSWFLDAFN 299
+ HGT VAG IA+ + +G P +A +HI +VF Y+S + A +
Sbjct: 56 WYQPGNNNAHGTHVAGTIAAIANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115
Query: 300 YAI-LKKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQM 358
+ +V+ +S+GG + + N V+LI+A GN G + + PA
Sbjct: 116 TCVNSGGANVVTMSLGGSGSTTT-ERNALNTHYNNGVLLIAAAGNAGD--SSYSYPASYD 172
Query: 359 DVIGVGGINFEDQIAKFSSRG 379
V+ V ++ A FS
Sbjct: 173 SVMSVAAVDSNLDHAAFSQYT 193
Score = 49.8 bits (119), Expect = 2e-06
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 466 SIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
+ + + D+G H TG NN N + HGT VAG
Sbjct: 18 DSQAGNRTICIIDSGYDRSHNDLNANNVTGTNNS----GTGNWYQPGNNNAHGTHVAGT 72
Score = 42.1 bits (99), Expect = 4e-04
Identities = 14/124 (11%), Positives = 30/124 (24%), Gaps = 3/124 (2%)
Query: 258 VAGLIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPD 317
V + +AP + + K V + G
Sbjct: 231 VVPHNRLTPSGTSYAPAP--INASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSS 288
Query: 318 FMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSS 377
+ + A +I+ S G L A+ + ++ +A +
Sbjct: 289 YPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLV-DANSDITVPSVSVDRATGLALKAK 347
Query: 378 RGMT 381
G +
Sbjct: 348 LGQS 351
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 109 bits (273), Expect = 6e-26
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 202 LQANTLWDLGI-RGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKL 252
++A ++W + S ++VAV DTG+ H + + + T D+
Sbjct: 90 VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVS-TKLRDCADQN 148
Query: 253 GHGTFVAGLIASS---QRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAIL------ 303
GHGT V G IA+ +G AP +++ RV + S AIL
Sbjct: 149 GHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVA 208
Query: 304 --------------KKMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYG 349
+V+++S+GGP D D + + +++++A GN+G
Sbjct: 209 DKDGDGIIAGDPDDDAAEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGA--P 265
Query: 350 TLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
+ + PA +VI VG I+ D IA FS+R
Sbjct: 266 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQ 295
Score = 48.6 bits (116), Expect = 4e-06
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 469 GSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
S ++VAV DTG+ H + + + T D+ GHGT V G
Sbjct: 103 VSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVS-TKLRDCADQNGHGTHVIGT 157
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 111 bits (278), Expect = 8e-26
Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 23/198 (11%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLG 253
+ G+ + VAV DTG+ H G+ +
Sbjct: 141 IGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPA-FDEELPAGTDSSYGGS 199
Query: 254 HGTFVAGLIASSQRCLGF---APDAELHIFRVFTNQQVS------YTSWFLDAFNYAILK 304
GT VAG IA+ + G AP A++ +F + + + +A
Sbjct: 200 AGTHVAGTIAAKKDGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDH 259
Query: 305 KMDVLNLSIGGPDFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVG 364
V+N S GG + + + + V+++ + GN+ PA VI V
Sbjct: 260 GAKVMNHSWGGWGY-SYTMKEAFDYAMEHGVVMVVSAGNNTSD-SHHQYPAGYPGVIQVA 317
Query: 365 GINFED---QIAKFSSRG 379
+++ ++A FSSR
Sbjct: 318 ALDYYGGTFRVAGFSSRS 335
Score = 49.7 bits (118), Expect = 2e-06
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 468 RGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
G+ + VAV DTG+ H G+ + GT VAG
Sbjct: 152 SGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPA-FDEELPAGTDSSYGGSAGTHVAGT 207
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 102 bits (257), Expect = 4e-24
Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 30/236 (12%)
Query: 208 WDLGIRGSGVKVAVFDTGLSSGH-------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 260
L + + V V+V D+G++ F+ + + + + + E HGT +A
Sbjct: 37 MSLTDKNTPVVVSVVDSGVAFIGGLSDSEFAKFSFTQDGSPFPVKKS-EALYIHGTAMAS 95
Query: 261 LIASSQRCLGFAPDAELHIFRVFTNQQVSYTSWFLD---AFNYAILKKMDVLNLSIGGPD 317
LIAS G P A + RV + ++ + + + ++N+S G
Sbjct: 96 LIASRYGIYGVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKG 155
Query: 318 FMDFPFV--DKVWELTANRVILISAIGNDGPLYGTLNN-----PADQMD----------V 360
N ++++A+GNDG L+ PA V
Sbjct: 156 VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPV 215
Query: 361 IGVGGINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTNGECQYMW 416
I V + + G +G DI G + + +
Sbjct: 216 IRVAALAQYRKGETPVLHGGGIT--GSRFGNNWVDIAAPGQNITFLRPDAKTGTGS 269
Score = 47.4 bits (113), Expect = 7e-06
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGH-------TGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
++ + + V V+V D+G++ F+ + + + + + E HGT +A +
Sbjct: 38 SLTDKNTPVVVSVVDSGVAFIGGLSDSEFAKFSFTQDGSPFPVKKS-EALYIHGTAMASL 96
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 100 bits (250), Expect = 3e-23
Identities = 28/221 (12%), Positives = 55/221 (24%), Gaps = 19/221 (8%)
Query: 182 TGRLTSRRLLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTD 241
+ + + ++ D GL
Sbjct: 58 GDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEAL---EAV 114
Query: 242 WTNENTLEDKLGHGTFVAGLIASSQR--CLGFAPDAELHIFRVF-----TNQQVSYTSWF 294
+ H V I + G AP+ + V
Sbjct: 115 IPDTKDRIVLNDHACHVTSTIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNL 174
Query: 295 LDAFNYAILKKMDVLNLSIGGPDFMDFP---FVDKVWELTANRVILISAIGNDGPLYGTL 351
A + A+ ++++ + P V + + N V+++S GN+ +
Sbjct: 175 ARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSN--ESW 232
Query: 352 NNPADQMDVIGVGGINFEDQIAKFSSRGMTAWEL----PGG 388
PA + VG + FS+ G + PG
Sbjct: 233 CLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEGILAPGE 273
Score = 37.8 bits (88), Expect = 0.008
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 5/88 (5%)
Query: 430 IIVNVTILNGMGVVGKILERPKWYPYLPHNGEFLE-VSIRGSGVKVAVFDTGLSSGHTGF 488
I + + I E + P+ E E ++ ++ D GL
Sbjct: 51 ITIVI-IDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEE 109
Query: 489 NNVAERTDWTNENTLEDKLGHGTFVAGI 516
+ H V
Sbjct: 110 AL---EAVIPDTKDRIVLNDHACHVTST 134
Score = 34.0 bits (78), Expect = 0.13
Identities = 8/90 (8%), Positives = 18/90 (20%), Gaps = 9/90 (10%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGH---TGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRIL 520
++ + + + D G W + F + + L
Sbjct: 43 NQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGL 102
Query: 521 WDQYHNLRYPQGYFPRDNLKMKNDPLDWNG 550
+ P D + N
Sbjct: 103 -KGKEKEEALEAVIPDT-----KDRIVLND 126
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 97.3 bits (243), Expect = 1e-22
Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 13/172 (7%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAER--TDWTNENTLEDKLGHGTFVAGLIASSQRCLGF 271
G GV V DTG+++ H F + N+ D GHGT VAG I SQ G
Sbjct: 28 GFGVTAYVIDTGVNNNHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAGTIGGSQ--YGV 85
Query: 272 APDAELHIFRVFTNQQVSYTSWFLDAFNYAI--LKKMDVLNLSIGGP--DFMDFPFVDKV 327
A + + RV + TS + ++ V N+S+GG +D V
Sbjct: 86 AKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALD----SAV 141
Query: 328 WELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
+ V + A GN +PA + VG D + FS+ G
Sbjct: 142 QGAIQSGVSFMLAAGNSNAD-ACNTSPARVPSGVTVGSTTSSDSRSSFSNWG 192
Score = 48.4 bits (116), Expect = 3e-06
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAER--TDWTNENTLEDKLGHGTFVAGI 516
G GV V DTG+++ H F + N+ D GHGT VAG
Sbjct: 28 GFGVTAYVIDTGVNNNHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAGT 77
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 96.5 bits (241), Expect = 2e-22
Identities = 51/172 (29%), Positives = 65/172 (37%), Gaps = 13/172 (7%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAER--TDWTNENTLEDKLGHGTFVAGLIASSQRCLGF 271
GSGV V DTG+ + H F A N+ D GHGT VAG I S G
Sbjct: 30 GSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYDATDCNGHGTHVAGTIGGST--YGV 87
Query: 272 APDAELHIFRVFTNQQVSYTSWFLDAFNYAI--LKKMDVLNLSIGGP--DFMDFPFVDKV 327
A + + RV S + N+ V N+S+GG D D V
Sbjct: 88 AKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATD----DAV 143
Query: 328 WELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
A + + A GND +PA D I VG D + FS+ G
Sbjct: 144 NAAVAAGITFVVAAGNDNSNACN-YSPARAADAITVGSTTSNDSRSSFSNYG 194
Score = 48.0 bits (115), Expect = 3e-06
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAER--TDWTNENTLEDKLGHGTFVAGI 516
GSGV V DTG+ + H F A N+ D GHGT VAG
Sbjct: 30 GSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYDATDCNGHGTHVAGT 79
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 95.9 bits (239), Expect = 8e-22
Identities = 56/261 (21%), Positives = 86/261 (32%), Gaps = 63/261 (24%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSS-----------------------GHTGFNNVAE 238
++A+ +WD+G G V VAV DTG+ G + +
Sbjct: 19 VKADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFD 78
Query: 239 RTDW----------TNENTLEDKLGHGTFVAGLIASS----QRCLGFAPDAELHIFRVFT 284
DW D HG+ VAG IA+ G A A++ R
Sbjct: 79 EGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRALG 138
Query: 285 NQQVSYTSWFLDAFNYAI----------LKKMDVLNLSIGGPDFMDFPFVDKVWELTANR 334
Y S D +A V+N+S+G + + T
Sbjct: 139 RCG-GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATRLG 197
Query: 335 VILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG----MTAWELPGGYG 390
+++ A GN+ + P +V+ VG A FS+ G + A PG
Sbjct: 198 ALVVVAAGNENQ-NASNTWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAA---PGQ-- 251
Query: 391 RVKPDIV-TYGSAVRGPSTNG 410
DI+ T S R P ++
Sbjct: 252 ----DILSTVDSGTRRPVSDA 268
Score = 34.7 bits (80), Expect = 0.079
Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 33/86 (38%)
Query: 464 EVSIRGSGVKVAVFDTGLSS-----------------------GHTGFNNVAERTDW--- 497
++ G V VAV DTG+ G + + DW
Sbjct: 26 DMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDN 85
Query: 498 -------TNENTLEDKLGHGTFVAGI 516
D HG+ VAG
Sbjct: 86 WACGGRPDPRKERSDSSWHGSHVAGT 111
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 92.3 bits (230), Expect = 5e-21
Identities = 51/171 (29%), Positives = 69/171 (40%), Gaps = 13/171 (7%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAER-TDWTNENTLEDKLGHGTFVAGLIASSQRCLGFA 272
G GV V V DTG+ + H F A D N +D GHGT VAG I G A
Sbjct: 30 GRGVNVYVIDTGIRTTHREFGGRARVGYDALGGNG-QDCNGHGTHVAGTIGGVT--YGVA 86
Query: 273 PDAELHIFRVFTNQQVSYTSWFLDAFNYAI--LKKMDVLNLSIGGP--DFMDFPFVDKVW 328
L+ RV TS + ++ ++ V N+S+GG +D + V
Sbjct: 87 KAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALD----NAVK 142
Query: 329 ELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
A V+ A GND +PA + + VG D A FS+ G
Sbjct: 143 NSIAAGVVYAVAAGNDNAN-ACNYSPARVAEALTVGATTSSDARASFSNYG 192
Score = 46.4 bits (111), Expect = 1e-05
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAER-TDWTNENTLEDKLGHGTFVAGI 516
G GV V V DTG+ + H F A D N +D GHGT VAG
Sbjct: 30 GRGVNVYVIDTGIRTTHREFGGRARVGYDALGGNG-QDCNGHGTHVAGT 77
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 89.9 bits (224), Expect = 3e-20
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 17/175 (9%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G+G V V DTG+ H F A + + +T D GHGT AG I S G A
Sbjct: 31 GAGACVYVIDTGVEDTHPDFEGRA-KQIKSYASTARDGHGHGTHCAGTIGSKT--WGVAK 87
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAI-------LKKMDVLNLSIGGP--DFMDFPFV 324
+ +V + S + ++ + V ++S+GG ++
Sbjct: 88 KVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALN---- 143
Query: 325 DKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
L ++ V + A GND +PA + V VG + D + FS+ G
Sbjct: 144 QAAARLQSSGVFVAVAAGNDNRD-AANTSPASEPTVCTVGATDSNDVRSTFSNYG 197
Score = 47.2 bits (113), Expect = 5e-06
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
G+G V V DTG+ H F A + + +T D GHGT AG
Sbjct: 31 GAGACVYVIDTGVEDTHPDFEGRA-KQIKSYASTARDGHGHGTHCAGT 77
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 94.0 bits (233), Expect = 3e-20
Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 48/209 (22%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGF----------------------------- 233
Q TL + +G+G VAV D G H +
Sbjct: 5 QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGE 64
Query: 234 ---NNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGF--------APDAELHIFRV 282
+ VA D++ + HGT V+G+++ + P+A+L + RV
Sbjct: 65 WVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRV 124
Query: 283 FTNQQVS-YTSWFLDAFNYAILKKMDVLNLSIGGPDFMDFPFVDKVWELTANR-----VI 336
++ Y + A AI V+N+S G D + + V
Sbjct: 125 EIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPD-ETKKAFDYAKSKGVS 183
Query: 337 LISAIGNDGPL-YGTLNNPADQMDVIGVG 364
++++ GND T AD D VG
Sbjct: 184 IVTSAGNDSSFGGKTRLPLADHPDYGVVG 212
Score = 36.2 bits (83), Expect = 0.033
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 32/83 (38%)
Query: 466 SIRGSGVKVAVFDTGLSSGHTGF--------------------------------NNVAE 493
+ +G+G VAV D G H + + VA
Sbjct: 13 AGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAY 72
Query: 494 RTDWTNENTLEDKLGHGTFVAGI 516
D++ + HGT V+GI
Sbjct: 73 YHDYSKDGKTAVDQEHGTHVSGI 95
Score = 28.5 bits (63), Expect = 7.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 370 DQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAV 403
++++FSS G G +KPDI G +
Sbjct: 364 TKLSRFSSWG------LTADGNIKPDIAAPGQDI 391
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 89.6 bits (223), Expect = 4e-20
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 214 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAP 273
G G V V DTG+ + H F A + T + D GHGT AG + S G A
Sbjct: 30 GQGSCVYVIDTGIEASHPEFEGRA-QMVKTYYYSSRDGNGHGTHCAGTVGSRT--YGVAK 86
Query: 274 DAELHIFRVFTNQQVSYTSWFLDAFNYAI-------LKKMDVLNLSIGGP--DFMDFPFV 324
+L +V + S + ++ K V +LS+GG ++
Sbjct: 87 KTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVN---- 142
Query: 325 DKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRG 379
L ++ V++ A GN+ +PA + V VG + D+ + FS+ G
Sbjct: 143 SAAARLQSSGVMVAVAAGNNNADARN-YSPASEPSVCTVGASDRYDRRSSFSNYG 196
Score = 46.4 bits (111), Expect = 1e-05
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 469 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
G G V V DTG+ + H F A + T + D GHGT AG
Sbjct: 30 GQGSCVYVIDTGIEASHPEFEGRA-QMVKTYYYSSRDGNGHGTHCAGT 76
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 92.3 bits (229), Expect = 6e-20
Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 20/181 (11%)
Query: 214 GSGVKVAVFDTGLSSGHT---------GFNNVAERTDWTNENTLEDKLGHGTFVAGLIAS 264
GS V+V + DT + S H F NV E HGT +AG+++
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSG 84
Query: 265 SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAI------LKKMDVLNLSIGGPDF 318
G A A + RV Q S L + V+ L + G
Sbjct: 85 RD--AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG-- 140
Query: 319 MDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSR 378
L V+L++A GN L +PA +VI VG N +DQ +
Sbjct: 141 YSRVLNAACQRLARAGVVLVTAAGNFRDD-ACLYSPASAPEVITVGATNAQDQPVTLGTL 199
Query: 379 G 379
G
Sbjct: 200 G 200
Score = 46.4 bits (110), Expect = 2e-05
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 469 GSGVKVAVFDTGLSSGHT---------GFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
GS V+V + DT + S H F NV E HGT +AG+
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 90.8 bits (225), Expect = 2e-19
Identities = 45/183 (24%), Positives = 65/183 (35%), Gaps = 24/183 (13%)
Query: 214 GSGVKVAVFDTGLSSGHT---------GFNNVAERTDWTNENTLEDKLGHGTFVAGLIAS 264
GS V+V + DT + S H F NV E HGT +AG+++
Sbjct: 177 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSG 236
Query: 265 SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAI------LKKMDVLNLSIGGP-- 316
G A A + RV Q S L + V+ L + G
Sbjct: 237 RD--AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYS 294
Query: 317 DFMDFPFVDKVWELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFS 376
++ L V+L++A GN L +PA +VI VG N +DQ
Sbjct: 295 RVLN----AACQRLARAGVVLVTAAGNFRDD-ACLYSPASAPEVITVGATNAQDQPVTLG 349
Query: 377 SRG 379
+ G
Sbjct: 350 TLG 352
Score = 46.9 bits (111), Expect = 2e-05
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 469 GSGVKVAVFDTGLSSGHT---------GFNNVAERTDWTNENTLEDKLGHGTFVAGI 516
GS V+V + DT + S H F NV E HGT +AG+
Sbjct: 177 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 233
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 83.6 bits (206), Expect = 3e-17
Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 31/216 (14%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDW------TNENTLEDKLGH 254
+ LW I G+GV A+ D GL + +N W H
Sbjct: 41 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYH 100
Query: 255 GTFVAGLIAS----SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLN 310
GT AG IA+ + +G +A++ R+ + T + Y + D+ +
Sbjct: 101 GTRCAGEIAAKKGNNFCGVGVGYNAKISGIRILSGD--ITTEDEAASLIYGL-DVNDIYS 157
Query: 311 LSIGGPDFMDFPFVDKVWELTANR-------------VILISAIGNDGPLYGTLNNPA-- 355
S G D D + +L I + A GN G N
Sbjct: 158 CSWGPAD--DGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYT 215
Query: 356 DQMDVIGVGGINFEDQIAKFSSRGMTAWELPGGYGR 391
+ + I +G I+ +D +S + G
Sbjct: 216 NSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGS 251
Score = 40.1 bits (93), Expect = 0.002
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDW------TNENTLEDKLGHGTFVAGI 516
+I G+GV A+ D GL + +N W HGT AG
Sbjct: 48 YNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGE 107
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 77.1 bits (189), Expect = 5e-15
Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 57/263 (21%)
Query: 203 QANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNV-------------------------- 236
++ LW G V VAV D+G+ F +
Sbjct: 12 PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNR 71
Query: 237 --------------AERTDWTNENTLEDKLGHGTFVAGLIASSQ------------RCLG 270
+ T N+ D GHGT A + A + G
Sbjct: 72 KLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARG 131
Query: 271 FAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGG--PDFMDFPFVDKVW 328
AP A L +++ N+ ++TS + A + A+ +D++++S G + +
Sbjct: 132 VAPRARLAVYKFSFNEG-TFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASF 190
Query: 329 ELTANRVILISAIGNDGPLYGTLNNPADQMDVIGVG--GINFEDQIAKFSSRGMTAWELP 386
V++ ++ GN GP G+LNN + + + G F + + + W L
Sbjct: 191 GAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLF 250
Query: 387 GGYGRVKPDIVTYGSAVRGPSTN 409
V+ V Y + S+
Sbjct: 251 PARAFVRDSPVIYNKTLSDCSSE 273
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 77.0 bits (189), Expect = 6e-15
Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 73/295 (24%)
Query: 205 NTLWDLGIRGSGVKVAVFDTGLSSGHTGF------------------------NNVAERT 240
T+ S + V V DTG+ F N
Sbjct: 12 LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGA 71
Query: 241 DW---------TNENTLEDKLGHGTFVAGLIASSQ------------RCLGFAPDAELHI 279
+ N D GHGT A A G P A +
Sbjct: 72 RSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAA 131
Query: 280 FRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFMDF---PFVDKVWELTANRVI 336
++V N + L A++ AI +D+++LS+GG + + + ++
Sbjct: 132 YKVCWNDG-CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGIL 190
Query: 337 LISAIGNDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRGMTAWELPG----GYGRV 392
++ GN GP + T + + ++ V + + G G +
Sbjct: 191 TSNSAGNGGPNFFTTASLSP--WLLSVAASTMDRKFVTQVQIG-NGQSFQGVSINTFDNQ 247
Query: 393 KPDIVTYGSAVRGPSTNGECQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKIL 447
+V+ ++ +N + GKI+
Sbjct: 248 YYPLVSGRDIPNTGFDKSTSRFCTDKS-----------------VNPNLLKGKIV 285
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 75.4 bits (184), Expect = 2e-14
Identities = 52/293 (17%), Positives = 81/293 (27%), Gaps = 61/293 (20%)
Query: 208 WDLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTLE-----DKLGHGTFVAGL 261
G+ G GV VAV D GL+ H +NV + + + GHGT V+G+
Sbjct: 63 HRTGVLGHGVNVAVVDDGLAIAHPDLADNVRPGSKNVVTGSDDPTPTDPDTGHGTSVSGI 122
Query: 262 IASS---QRCLGFAPDAELHIFRVFTNQ-QVSYTSWFLDAFNYAILKKMDVLNLSIGGPD 317
IA+ G AP A+L F + + Q W + + V N S
Sbjct: 123 IAAVDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNHSYRMSV 182
Query: 318 F-------MDFPFVDKVWE---LTANRVILISAIGNDGPLYGTLNN-------------- 353
+D +D+++E L A I A GN
Sbjct: 183 VDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFE 242
Query: 354 ------PADQMDVIGVGGINFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPS 407
+ V +N + + +SS G + + G +
Sbjct: 243 NSNLDPSNSNFWNLVVSALNADGVRSSYSSVGSNIF------------LSATGGEYGTDT 290
Query: 408 TNGECQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPYLPHNG 460
P G + + G NG
Sbjct: 291 ---------PAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNG 334
Score = 39.5 bits (91), Expect = 0.003
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTLE-----DKLGHGTFVAGI 516
+ G GV VAV D GL+ H +NV + + + GHGT V+GI
Sbjct: 64 RTGVLGHGVNVAVVDDGLAIAHPDLADNVRPGSKNVVTGSDDPTPTDPDTGHGTSVSGI 122
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 73.9 bits (181), Expect = 4e-14
Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 34/230 (14%)
Query: 202 LQANTLWDLGIRGSGVKVAVFDTGLSSGHT----------GFNNVAERTDWTNENTLEDK 251
L W G G G+ V++ D G+ H F+ + D T +
Sbjct: 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMND 84
Query: 252 LGHGTFVAGLIASSQRC----LGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAI-LKKM 306
HGT AG +A+ +G A +A + R+ + ++A + + +
Sbjct: 85 NRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHI 140
Query: 307 DVLNLSIGGPD---FMDFP-------FVDKVWELTANR-VILISAIGNDGPLYGTLNNP- 354
+ + S G D +D P F V + I + A GN G + + N
Sbjct: 141 HIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDG 200
Query: 355 -ADQMDVIGVGGINFEDQIAKFSSRGMTAWEL--PGGYGRVKPDIVTYGS 401
+ + + + + +S + G K + T
Sbjct: 201 YTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLR 250
Score = 40.1 bits (93), Expect = 0.002
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 464 EVSIRGSGVKVAVFDTGLSSGHT----------GFNNVAERTDWTNENTLEDKLGHGTFV 513
G G+ V++ D G+ H F+ + D T + HGT
Sbjct: 32 AQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRC 91
Query: 514 AGI 516
AG
Sbjct: 92 AGE 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 9e-08
Identities = 82/456 (17%), Positives = 136/456 (29%), Gaps = 194/456 (42%)
Query: 106 LLEEVTAALSSLLEHPLIKRVTPQRLVHRSLQFI-----PEQRHGSEGVKDEDGSEGVEK 160
L++ LS L+ + +++ + L + P D+D
Sbjct: 187 LIKFSAETLSELIRTT----LDAEKVFTQGLNILEWLENPSNTP------DKD----YLL 232
Query: 161 EADVR-PLRRTSLGV-Q-SQFWQATGRLTSRRLLKTVPRQITSILQANTLWDLGIRGSGV 217
+ PL +GV Q + + + + +LL P ++ S L+ T G+
Sbjct: 233 SIPISCPL----IGVIQLAHY------VVTAKLLGFTPGELRSYLKGAT-----GHSQGL 277
Query: 218 KVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGLIASSQRCLGFAPDAEL 277
AV +AE W + K F G+ RC P+ L
Sbjct: 278 VTAVA-------------IAETDSWESFFVSVRKAITVLFFIGV-----RCYEAYPNTSL 319
Query: 278 HIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDFM----DFP------FVDKV 327
+IL+ D L + G P M + +V+K
Sbjct: 320 PP---------------------SILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 328 -WELTANRVILISAI-GND-----GP---LYGTLNN-------PA--DQMDVIGVGGINF 368
L A + + IS + G GP LYG LN P+ DQ I F
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQ------SRIPF 409
Query: 369 EDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAVRGPSTNGECQYMWPYCTQPLYHGAI 428
++ KFS+R LP + ++ P+ + L A
Sbjct: 410 SERKLKFSNRF-----LP---------V----AS--------------PFHS-HLLVPAS 436
Query: 429 PIIVNVTILNGMGVVGKILERPKWYPYLPHNGEFLEVSIRGSGVKVAVFDTGLSSGHTGF 488
+I L + VS +++ V+DT G
Sbjct: 437 DLINKD------------LVKN-------------NVSFNAKDIQIPVYDT-----FDGS 466
Query: 489 N------NVAERT---------DWTNENTLEDKLGH 509
+ +++ER W E T + K H
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATH 500
Score = 50.4 bits (120), Expect = 1e-06
Identities = 57/274 (20%), Positives = 85/274 (31%), Gaps = 92/274 (33%)
Query: 19 SDSYVQD-VECIRQIKDNGEKERLSRVKCKQKCNLHKEFIVTFRGYYKS------AARSR 71
+ VQD V G++ +S V N K +V+ G +S R
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLV------NGAKNLVVS--GPPQSLYGLNLTLRKA 396
Query: 72 YIAAALNNSDSVLRWEILQRKNPATDFPSDFDVVLLEEVTAAL-SSLLEHPLIKRVTPQR 130
+ L+ S R +RK F L V + S LL P + +
Sbjct: 397 KAPSGLDQS----RIPFSERK-LK------FSNRFLP-VASPFHSHLLV-PASDLI-NKD 442
Query: 131 LVHRSLQF------IPEQRHGSEGVKD-EDGSEGVEKEADVRPLRRTSLGVQSQFWQATG 183
LV ++ F IP V D DGS D+R L S+ +
Sbjct: 443 LVKNNVSFNAKDIQIP--------VYDTFDGS-------DLRVLS-GSI---------SE 477
Query: 184 RLTSRRLLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWT 243
R+ I L W+ + + F G +SG T
Sbjct: 478 RIV---------DCIIR-LPVK--WETTTQFKATHILDFGPGGASGLGVL---------T 516
Query: 244 NENTLEDKLGHGTFVAGLIASSQRCLGFAPDAEL 277
+ N K G G V ++A + L PD +
Sbjct: 517 HRN----KDGTGVRV--IVAGT---LDINPDDDY 541
Score = 41.2 bits (96), Expect = 0.001
Identities = 55/368 (14%), Positives = 114/368 (30%), Gaps = 120/368 (32%)
Query: 242 WTNENTLEDKLGHGTFVAGLIASSQRCLGFAPD------AELHI-FRVFTNQQV------ 288
+ + L+++ F L ++ GFA D AEL F + + V
Sbjct: 27 FFIASQLQEQ-----FNKILPEPTE---GFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 289 SYTS---WFLDAFNYAILKKMDV--LNLSIGGPDFMDFPFVDKVWE------LTANRVI- 336
+ L F L+ D+ L + + ++ + + A R
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 337 ------LISAIGNDG--PLY------GTLNNPADQM------------DVIGVGGINFED 370
L A+ +G L G ++ +++ D+I +
Sbjct: 139 KKSNSALFRAV-GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA----E 193
Query: 371 QIAKFSSRGMTAWEL-PGGYGRVKPDIVTYGSAVRGPSTNGECQYMWPYCTQPLYHGAIP 429
+++ + A ++ G +I+ + PS + Y+ + P+ + P
Sbjct: 194 TLSELIRTTLDAEKVFTQGL-----NIL---EWLENPSNTPDKDYL---LSIPI---SCP 239
Query: 430 IIVNVTILNGMGVVGKILERPKWYPYLPHNGEFLE----VSIRGSGVKVAVFDTGLSSGH 485
+I + + + + V K+L + P GE + G+ AV
Sbjct: 240 LIGVIQLAHYV-VTAKLLG------FTP--GELRSYLKGATGHSQGLVTAVA-------- 282
Query: 486 TGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRILWDQYHNLRYPQGYFPRDNL--KMKN 543
+AE W + K F G++ +P +L +
Sbjct: 283 -----IAETDSWESFFVSVRKAITVLFFIGVRC------------YEAYPNTSLPPSILE 325
Query: 544 DPLDWNGD 551
D L+ N +
Sbjct: 326 DSLE-NNE 332
Score = 38.5 bits (89), Expect = 0.008
Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 67/201 (33%)
Query: 312 SIG-GPDFMD-FPFVDKVWE-----LTANRVILISAIGNDGPLYGTLNNPADQMDVIGVG 364
G G D VW I I + P+ T++ G
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG-------GEK 1680
Query: 365 G----INFEDQIAKFSSRGMTAWELPGGYGRVKPDIVTYGSAV--RGPSTNGEC---QYM 415
G N+ I + G E ++ +I + ++ R G Q+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTE------KIFKEINEHSTSYTFRSE--KGLLSATQF- 1731
Query: 416 WPYCTQPLYHGAIPIIVNVTILNGM---GVVGKILERPKWYPYLPHN-GEF--------- 462
TQP A+ ++ + G++ P + H+ GE+
Sbjct: 1732 ----TQP----AL-TLMEKAAFEDLKSKGLI------PADATFAGHSLGEYAALASLADV 1776
Query: 463 --LE-----VSIRGSGVKVAV 476
+E V RG ++VAV
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAV 1797
Score = 33.1 bits (75), Expect = 0.35
Identities = 44/337 (13%), Positives = 80/337 (23%), Gaps = 142/337 (42%)
Query: 8 DVYSSCSYS----ENSDSYVQDVE--CIRQI-KDNGEKERLSRVKCKQKCNLHKEFIVTF 60
D+Y + + +D++ +D I I +N + F
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-----------------VNLTIHF 1676
Query: 61 RGYYKSAARSRYIAAALNNSDSVLRWEILQRKNPATDFPSDFDVVLLEEVTAALSSL-LE 119
G R Y A + +E + T+ + +E+ +S
Sbjct: 1677 GGEKGKRIRENYSA---------MIFETIVDGKLKTE-------KIFKEINEHSTSYTFR 1720
Query: 120 HPLIKRVTPQRLVHRSLQFIPEQRHGSEGVKDEDGSEGVEKEADVRPLRRTSLGVQSQFW 179
+G+ L T QF
Sbjct: 1721 SE-------------------------KGL-----------------LSAT------QF- 1731
Query: 180 QATGRLTSRRLLKTVPRQITSILQANTLWDLGIRGSGVKVAVFDTGLS----------SG 229
T L + L G+ + A G S +
Sbjct: 1732 ------TQPALT------LMEKAAFEDLKSKGLIPADATFA----GHSLGEYAALASLAD 1775
Query: 230 HTGFNN----VAERTDWTNENTLEDKLGHGTFVAGLIA--SSQRCLGFAPDAELHIFRVF 283
+ V R D+LG + G+IA + F+ +A ++
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNY--GMIAINPGRVAASFSQEALQYVVERV 1833
Query: 284 TNQQVSYTSWFLDAFNYAILKKMDVLNLS-----IGG 315
+ T W ++ NY N+ G
Sbjct: 1834 GKR----TGWLVEIVNY---------NVENQQYVAAG 1857
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 4e-05
Identities = 78/552 (14%), Positives = 161/552 (29%), Gaps = 137/552 (24%)
Query: 87 EILQRKNPATDFPSDFDVVLLEEVT-AALSSL-LEHPLIKRVTPQRLVHRSLQFIPEQRH 144
+IL F +FD ++++ + LS ++H ++ + + F
Sbjct: 20 DILSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWTLLSK 74
Query: 145 GSEGVKD--EDG--------SEGVEKEADVRPLRRTSLGVQSQFWQATGRLTSRRLLKTV 194
E V+ E+ ++ E + Q ++ ++ V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NV 131
Query: 195 PR--QITSILQANTLWDL---------GIRGSGVKVAVFDTGLSSG-HTGFNNVAERTDW 242
R + QA L +L G+ GSG D LS + + W
Sbjct: 132 SRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFW 186
Query: 243 TNENTLEDKLGHGTFVAGLIASSQR-CLGFAP-----------------DAELHIFRVFT 284
N L + ++ Q+ P + + R+
Sbjct: 187 LN-------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 285 NQQ----------VSYTSWFLDAFNYA--IL---KKMDVLNLSIGGPDFMDFPFVDKVWE 329
++ V + +AFN + IL + V + +
Sbjct: 240 SKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMT 297
Query: 330 LTANRV--ILISAIG---NDGPLYGTLNNPADQMDVIGVGGINFEDQIAKFSSRGMTAWE 384
LT + V +L+ + D P NP + + IA+ G+ W+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR----RLSI--------IAESIRDGLATWD 345
Query: 385 LPGGYGRVKPDIVTYGSAVRGPSTNGECQYMWPYCTQPLYHG-AI-PIIVNVTILNGMGV 442
+ V D +T + S N + P + ++ ++ P ++
Sbjct: 346 ---NWKHVNCDKLT---TIIESSLN----VLEPAEYRKMFDRLSVFPPSAHIPT------ 389
Query: 443 VGKILERPKWYPYLPHNGEFLEVSIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENT 502
+L W+ + + + + + S + + + + + NE
Sbjct: 390 --ILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYA 444
Query: 503 LEDKLGHGTFVAGIKRILWDQYHNLRYPQGYFPRDNLKMKNDPLDWN--GDHVHTNFKYE 560
L H + I+ D Y P+ + D + D ++ G H+ E
Sbjct: 445 L-----H-------RSIV-DHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 561 QRKAPSDWFKDF 572
+ F DF
Sbjct: 489 RMTLFRMVFLDF 500
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase,
hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP}
SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A*
1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Length = 372
Score = 41.6 bits (97), Expect = 5e-04
Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%)
Query: 195 PRQITSILQANTLWDLGIRGSGVKVAVFDTG----LSSGHTGF--NNVAERTDWTNENTL 248
P + +I A++ + V + G F N + T
Sbjct: 10 PTEFPTIYDASSAPT----AANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTG 65
Query: 249 EDKLGHGTFVAGLIASS---QRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKK 305
+ G Q +G A A + +Q S + AFN A+
Sbjct: 66 SSNGDYSDDQQGQGEWDLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDN 125
Query: 306 M-DVLNLSIGGPDFMDFP-----FVDKVWELTANR-VILISAIGNDGPLYGTLNN----- 353
+ V+N+S+G + D+++ A + + G++G
Sbjct: 126 VAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGS 185
Query: 354 ------PADQMDVIGVGGINF 368
PA +VI VGG
Sbjct: 186 TYSVSWPASSPNVIAVGGTTL 206
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 32.0 bits (73), Expect = 0.68
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 24/99 (24%)
Query: 311 LSIGGPDFMDFPFVDKV--WELTANRVILISAIGNDG----------PLYGTLNNPADQM 358
L IG D + FPF++ + W +++ ++G PL G +P +
Sbjct: 129 LQIGARD-VAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 359 D-------VIGVG----GINFEDQIAKFSSRGMTAWELP 386
D + G+G GINF I K + GMT +++P
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMP 226
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling
protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB:
3c2w_A* 3g6o_A* 3ibr_A*
Length = 505
Score = 31.5 bits (71), Expect = 0.81
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 508 GHGTFVAGIKRILWDQYHNLRYPQGYFPRD--NLKMKN 543
G VA +R + Y RYP P L ++N
Sbjct: 169 DSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQN 206
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 31.2 bits (70), Expect = 0.95
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 508 GHGTFVAGIKRILWDQYHNLRYPQGYFPRD--NLKMKN 543
HG +A KR + Y L YP+ P+ L + N
Sbjct: 182 NHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHN 219
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor,
bacteriopbhytochrome; HET: MSE BLA; 2.90A
{Rhodopseudomonas palustris tie-1}
Length = 635
Score = 31.3 bits (70), Expect = 1.0
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 508 GHGTFVAGIKRILWDQYHNLRYPQGYFPRD--NLKMKN 543
GHG + + Y RYP P+ L +
Sbjct: 176 GHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQ 213
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial structural
genomics initiative; 1.90A {Escherichia coli} SCOP:
c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 31.2 bits (71), Expect = 1.2
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 19/80 (23%)
Query: 303 LKKMDVLNLSIGGPDFMDFPFVDKVW--ELTANRVILIS---AIG---NDGPLYGTLNNP 354
++K V N+ +G D + V E A+ IL IG + G +G N
Sbjct: 299 MRKGAVGNVGVGIAD-----GIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNT 353
Query: 355 A------DQMDVIGVGGINF 368
Q D GG++
Sbjct: 354 RAILDMTSQFDFYHGGGLDV 373
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 30.4 bits (68), Expect = 1.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 508 GHGTFVAGIKRILWDQYHNLRYPQGYFPRD--NLKMKN 543
G +A +R + R+P + P L ++
Sbjct: 196 ATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRH 233
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine
kinase), PHYB1; bacteriophytochrome chromophore binding
domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Length = 327
Score = 29.9 bits (67), Expect = 2.2
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 508 GHGTFVAGIKRILWDQYHNLRYPQGYFPRD--NLKMKN 543
G +A + + Y L +P P L N
Sbjct: 178 FSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTIN 215
>2ool_A Sensor protein; bacteriophytochrome, photoconversion,
photoreceptor, biliver signaling protein; HET: LBV;
2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1
d.110.3.9
Length = 337
Score = 29.6 bits (66), Expect = 2.5
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 508 GHGTFVAGIKRILWDQYHNLRYPQGYFPRD--NLKMKN 543
G +A + + +P P L N
Sbjct: 191 WSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTIN 228
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 29.5 bits (67), Expect = 3.4
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 292 SWFLDAFNYAILKKM-----DVLNLSIGGPDF 318
S + F Y + +V + SIG P
Sbjct: 16 SAIRELFEYGKKRAAIVGKENVYDFSIGNPSI 47
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Length = 839
Score = 29.4 bits (65), Expect = 3.9
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 485 HTGFNNVAERTDWTNENTLEDKLGHGTFVAGIKRILWDQYHNLRYPQGYFPRDNLKMKND 544
+ N R N N + + + + Y N + P D +K
Sbjct: 534 NNMNINALARQSLINANGIIETTFLPS--KYSVEMSSAVYKNWVFTDQALPADLIKRGVA 591
Query: 545 PLDWNGDHVHT----NFKYEQ-----RKAPSDWFKDFCS 574
D + H ++ Y A W +++
Sbjct: 592 IKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVP 630
>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET:
FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus
thermophilus}
Length = 791
Score = 29.0 bits (65), Expect = 4.8
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 311 LSIGGPDFMDFPFVDKV--WELTANRVILISAIGNDG-----------PLYGTLNNPAD- 356
L +G D + P V+ W V+ + + G P + D
Sbjct: 97 LMLGARD-VALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFSAQSESGVDF 155
Query: 357 -----QMDVIG--VGGINFEDQIAKFSSRGMTAWELP 386
+ +G NF I ++GM+ W++P
Sbjct: 156 YLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMP 192
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 c.6.2.1
Length = 84
Score = 27.1 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 177 QFWQATGRLTSRRLLKTVPRQITSILQA 204
FW TG +SR LK R + LQ
Sbjct: 40 MFW--TGYFSSRPALKRYERLSYNFLQV 65
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain,
phycocyanobilin, PCB, bacteriophytochrome,
cyanobacterial phytochrome, kinase; HET: CYC; NMR
{Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Length = 172
Score = 27.6 bits (62), Expect = 7.3
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 508 GHGTFVAGIKRI-LWDQYHNLRYPQGYFPRD--NLKMKN 543
GHGT VA + L +P G P + L
Sbjct: 30 GHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLA 68
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain,
phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB:
2lb9_A*
Length = 208
Score = 27.7 bits (62), Expect = 9.6
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 508 GHGTFVAGIKRI-LWDQYHNLRYPQGYFPR 536
GHGT VA + L +P G P
Sbjct: 60 GHGTVVAEARGGERLPSLLGLTFPAGDIPE 89
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 28.1 bits (63), Expect = 10.0
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 20/54 (37%)
Query: 265 SQRCLGFAPDAELHIFRVFTNQQVSYTSWFLDAFNYAILKKMDVLNLSIGGPDF 318
+R G ++ + + + LNL G PD+
Sbjct: 16 PKRYQGSTKS----VWVEYI----------------QLAAQYKPLNLGQGFPDY 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,233,329
Number of extensions: 576851
Number of successful extensions: 1557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1419
Number of HSP's successfully gapped: 103
Length of query: 577
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 478
Effective length of database: 3,937,614
Effective search space: 1882179492
Effective search space used: 1882179492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)