BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy157
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1US7|B Chain B, Complex Of Hsp90 And P50
          Length = 265

 Score =  207 bits (527), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 152/246 (61%), Gaps = 29/246 (11%)

Query: 125 TVVNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQY----------------------- 161
           ++VN KP   + E S+E +EQ+ K FV++ EK IK +                       
Sbjct: 14  SMVNTKPEKTE-EDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEE 72

Query: 162 -ANYLVIWCINLAMDEKFDLMDHVAHQCICMQYLLELSKSLNIDPRACIGSFFSKIQIAE 220
            ANYLVIWCI+L ++EK  LM+ VAHQ I MQ++LEL+KSL +DPRAC   FF+KI+ A+
Sbjct: 73  TANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTAD 132

Query: 221 PDYKASFDDELKSFKERIRNXXXXXXXXXXXXXXXXXXXXXXGPGGLDPVEVFESLPDVL 280
             Y   F+DEL++FKER+R                       GPGGLDPVEV+ESLP+ L
Sbjct: 133 RQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEEL 192

Query: 281 KKCFELQDTAMLQEAIASLSPEEATYHMKRCVDSGLWVPDAKKAAGESEDPQENTPDAED 340
           +KCF+++D  MLQ+AI+ + P +A YHM+RC+DSGLWVP++K  A E+++ +E  P   D
Sbjct: 193 QKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSK--ASEAKEGEEAGPG--D 248

Query: 341 PTYSAV 346
           P   AV
Sbjct: 249 PLLEAV 254


>pdb|2K5B|B Chain B, Human Cdc37-Hsp90 Docking Model Based On Nmr
 pdb|2W0G|A Chain A, Hsp90 Co-Chaperone Cdc37
          Length = 129

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 1/92 (1%)

Query: 150 FVKENEKLI-KQYANYLVIWCINLAMDEKFDLMDHVAHQCICMQYLLELSKSLNIDPRAC 208
           ++ +N  L+ ++ ANYLVIWCI+L ++EK  LM+ VAHQ I MQ++LEL+KSL +DPRAC
Sbjct: 27  YLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRAC 86

Query: 209 IGSFFSKIQIAEPDYKASFDDELKSFKERIRN 240
              FF+KI+ A+  Y   F+DEL++FKER+R 
Sbjct: 87  FRQFFTKIKTADRQYMEGFNDELEAFKERVRG 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,756,599
Number of Sequences: 62578
Number of extensions: 299070
Number of successful extensions: 565
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 2
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)