RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy157
(347 letters)
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation,
ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP:
a.205.1.1 PDB: 2k5b_B 2w0g_A
Length = 265
Score = 196 bits (499), Expect = 3e-61
Identities = 115/246 (46%), Positives = 163/246 (66%), Gaps = 25/246 (10%)
Query: 121 GFTKTVVNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQYA------------------ 162
++VN KP + E S+E +EQ+ K FV++ EK IK +
Sbjct: 10 HGMASMVNTKPE-KTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHL 68
Query: 163 ------NYLVIWCINLAMDEKFDLMDHVAHQCICMQYLLELSKSLNIDPRACIGSFFSKI 216
NYLVIWCI+L ++EK LM+ VAHQ I MQ++LEL+KSL +DPRAC FF+KI
Sbjct: 69 VCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKI 128
Query: 217 QIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQKRLGPGGLDPVEVFESL 276
+ A+ Y F+DEL++FKER+R RAK ++++A+KE EEEER+KRLGPGGLDPVEV+ESL
Sbjct: 129 KTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESL 188
Query: 277 PDVLKKCFELQDTAMLQEAIASLSPEEATYHMKRCVDSGLWVPDAKKAAGESEDPQENTP 336
P+ L+KCF+++D MLQ+AI+ + P +A YHM+RC+DSGLWVP++K + + +
Sbjct: 189 PEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASEAKEGEEAGPGD 248
Query: 337 DAEDPT 342
+
Sbjct: 249 PLLEAV 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 5e-09
Identities = 53/358 (14%), Positives = 108/358 (30%), Gaps = 78/358 (21%)
Query: 16 EDETHPNIDTPSLFRWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAG 75
E+ N +++ + + + +++++ + K V Q
Sbjct: 84 EEVLRIN------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP- 136
Query: 76 ANNLDELKKALAELEKE----------------AAN-IRKKEEDLKKKEKITPW-NVDTI 117
+L++AL EL A + + K KI W N+
Sbjct: 137 ---YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNC 192
Query: 118 SKPGFTKTVVNK-----KPPLQQGEKSDEEKEQEMKAFVKENEKLI--KQYANYLVI--- 167
+ P ++ K P + + + E +L+ K Y N L++
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 168 ----WCINLAMDEK------------FDLMDHVAHQCICMQYLLE----------LSKSL 201
N A + D + I + + L K L
Sbjct: 253 VQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 202 NID----PR-ACIGSFFSKIQIAE--PDYKASFDDELKSFKERIRNRAKEKLDEALKEVE 254
+ PR + IAE D A++D+ +++ + L L+ E
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAE 370
Query: 255 EEERQKRLG--PGGLD-PVEVFESL-PDVLKKCFELQDTAMLQEAIASLSPEEATYHM 308
+ RL P P + + DV+K + + + ++ P+E+T +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Score = 37.5 bits (86), Expect = 0.006
Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 47/141 (33%)
Query: 216 IQIAEPDYKASFD-----DELKS-FKERIRNRAKEKLDEALKEVEEEERQKRLGPGGLDP 269
+ + E + +FD D KS KE++D + + RL
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILS-------KEEIDHIIMSKDAVSGTLRL------- 67
Query: 270 VEVFESLPDVLKKCFELQDTAMLQEAIASLSPEEATYHMKRCVDSGLWVPDAKKAAGESE 329
F + M+Q+ + + Y ++ E
Sbjct: 68 ---FW--------TLLSKQEEMVQKFVEEV--LRINYK---------FL--MSPIKTEQR 103
Query: 330 DPQENTP---DAEDPTYSAVD 347
P T + D Y+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQ 124
Score = 30.2 bits (67), Expect = 1.1
Identities = 25/193 (12%), Positives = 53/193 (27%), Gaps = 71/193 (36%)
Query: 100 EEDLKKKEKITPWNVDTISK-------PGFTKTVVNKKPPLQQGEKSDEEKEQEMKAFVK 152
E + K I D K++++K+ E+ +
Sbjct: 13 EHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKE---------------EIDHIIM 56
Query: 153 ENEKLIKQYANYLVIWCI--------------NLAMDEKFDLMDHVAHQC-----ICMQY 193
+ + + W + L ++ KF LM + + + Y
Sbjct: 57 SKDAVSG---TLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY 112
Query: 194 LLELSKSLNIDPRACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEV 253
+ + + N + F+K ++ R + KL +AL E+
Sbjct: 113 IEQRDRLYNDNQV------FAKYNVS-------------------RLQPYLKLRQALLEL 147
Query: 254 EEEERQKRLGPGG 266
+ G G
Sbjct: 148 RPAKNVLIDGVLG 160
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 46.8 bits (111), Expect = 7e-06
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 30 RWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAEL 89
R R A+ + +EE E E +E+E+ + L+ KKK+ + L+E + A +L
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 90 EKEAANIRKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKA 149
+ E K + ++ I D +K TK + + + E+E++ K
Sbjct: 975 QLEKVTADGKIKKMEDDILI---MEDQNNK--LTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 150 FVKENEKL 157
K K
Sbjct: 1030 LTKLKNKH 1037
Score = 42.1 bits (99), Expect = 2e-04
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 33 HQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKE 92
++++ME+ L E + K K LEE L + L K + E
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 93 AANIRKKEEDLKK--------KEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKE 144
+ + + + +K K K+ + D + + + + + + +KE
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ------IAELQAQIAELKAQLAKKE 1094
Query: 145 QEMKAFVKENEKLIKQYAN 163
+E++A + E Q N
Sbjct: 1095 EELQAALARLEDETSQKNN 1113
Score = 40.2 bits (94), Expect = 0.001
Identities = 46/236 (19%), Positives = 89/236 (37%), Gaps = 20/236 (8%)
Query: 26 PSLFRWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKA 85
P L R + ++ +E+ ++ QQ+ E LK LE+ +L E + L +
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 86 LAELEKEAANIRKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQ 145
AE E+ + K+++L++ ++ + KK +QQ EE+ +
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK--MQQQMLDLEEQLE 965
Query: 146 EMKAFVKENEKLIKQYANYLVIWCINLAMDEKFDLMDHVAHQCICMQYLLELSKSLNIDP 205
E +A ++ + I D+ + D + L E L
Sbjct: 966 EEEAARQKLQLEKVTADG-----KIKKMEDDILIMEDQNNKLTKERKLLEERVSDL---- 1016
Query: 206 RACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQKR 261
+AE + KA +LK+ E + + + +L + K +E E+ KR
Sbjct: 1017 ---------TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Score = 39.4 bits (92), Expect = 0.002
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 32 RHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEK 91
+ + +EE+ + E+E+ K L + K K L + +K+ ELEK
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 92 EAANIRKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKAFV 151
+ + DL ++ + + + K+ LQ E++ + +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELK-----AQLAKKEEELQAALARLEDETSQKNNAL 1115
Query: 152 KENEKLIKQYAN 163
K+ +L ++
Sbjct: 1116 KKIRELESHISD 1127
Score = 33.3 bits (76), Expect = 0.15
Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 11 EISDDEDETHPNIDTPSLFRWRHQARVERMEEQ----RLENEKFQQEKEKTLKTLEETKK 66
++ + + H I +A++ + EE+ E +K LK + E +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123
Query: 67 KLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKK 106
+ + ++ +L+ K A + EK+ ++ ++ E LK +
Sbjct: 1124 HISDLQE----DLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 29.0 bits (65), Expect = 2.7
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 32 RHQARVERMEEQ----RLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALA 87
++ + ++E + K +++K + LE K +L ++ A +
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Query: 88 ELE 90
+ +
Sbjct: 1180 DDD 1182
Score = 29.0 bits (65), Expect = 2.8
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 28 LFRWRHQARVERMEEQRLENEK--FQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKA 85
L + E ++ + + + LE K ++E+ + +EL+
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 86 LAELEKEAANIRKKEEDLKKKEK 108
ELE ++E K
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYK 1179
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.9 bits (104), Expect = 6e-05
Identities = 29/231 (12%), Positives = 79/231 (34%), Gaps = 34/231 (14%)
Query: 30 RWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAEL 89
H+ + Q + + K LK + ++ + N + +L++ + E
Sbjct: 881 VHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940
Query: 90 EKEAANIRKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKA 149
KE ++ +K +L+ T+ + + L+ E+ + + +
Sbjct: 941 NKEYKSLLEKMNNLEITYSTE------------TEKLRSDVERLRMSEEEAKNATNRVLS 988
Query: 150 FVKENEKLIKQYANYLVIWCINLAMDEKFDLMD-HVAHQCICMQYLLELSKSLNIDPRAC 208
+E KL K+ ++ EK + + ++ Q + EL +
Sbjct: 989 LQEEIAKLRKE---------LHQTQTEKKTIEEWADKYKHETEQLVSELKEQN------- 1032
Query: 209 IGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQ 259
+ ++ + + D+ K E + + E+ + ++ +E +
Sbjct: 1033 -----TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 6e-05
Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 61/159 (38%)
Query: 223 YKASFDDELKSFKERIRNRAKEKLDEAL-----KEVEEEERQKRL---GPGG-------- 266
YK S K+ ++ + NRA + V + G G
Sbjct: 1636 YKTS-----KAAQD-VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 267 -----------LDPVEVFESLPDVLKK-CFE-----LQDTAMLQEAIASLSPEEATY-HM 308
L ++F+ + + F L T Q A+ + +A + +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME--KAAFEDL 1747
Query: 309 KRCVDSGLWVPDAKKAAGES--EDPQENTPDAEDPTYSA 345
K GL +P AG S E Y+A
Sbjct: 1748 K---SKGL-IPADATFAGHSLGE-------------YAA 1769
Score = 32.3 bits (73), Expect = 0.27
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 24/91 (26%)
Query: 127 VNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQYANYLVIWCINL------------AM 174
+N P + +E Q + V + + + NY N+ A+
Sbjct: 1812 IN---PGRVAASFSQEALQYVVERVGKRTGWLVEIVNY------NVENQQYVAAGDLRAL 1862
Query: 175 DEKFDLMDHVAHQCICMQYLLELSKSLNIDP 205
D ++++ + Q I ++EL KSL+++
Sbjct: 1863 DTVTNVLNFIKLQKI---DIIELQKSLSLEE 1890
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 1e-04
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 38 ERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAE-LEKEAANI 96
E + + R E K QE + +K E + +L+E + +E +EK N
Sbjct: 85 ESIRKWREEQRKRLQELD------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 97 RKKEEDLKKKEK 108
R ++ ++
Sbjct: 139 RIADKAFYQQPD 150
Score = 27.0 bits (59), Expect = 7.0
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 229 DELKSFKERIRNRAKEKLDEALKEVEEEERQKR 261
D L E IR + +E+ + L+E++ +
Sbjct: 78 DRLTQEPESIR-KWREEQRKRLQELDAASKVME 109
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 33.8 bits (77), Expect = 0.055
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 29 FRWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESE 72
W + + +EE+R E K ++ K L L +K E +
Sbjct: 150 VGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEK 193
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 34.1 bits (78), Expect = 0.072
Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 52/226 (23%)
Query: 40 MEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKK 99
+ E+R + E+ Q LK L +T+ + + +L+ +LA+ +E K
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQ-----------VKDLQVSLAQKNRELD--VKN 1954
Query: 100 EEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIK 159
E+ +K +++ + + E + K + +L
Sbjct: 1955 EQANQKLKQM---------------------------VQDQQAAEIKQKDARELQVQLDV 1987
Query: 160 QYANYLVIWCINLAMDEKFDLMDHVAHQCICMQYLLELSKSLNIDPRACIGSFFSKIQIA 219
+ V A EK + + + ++ K + A I + I
Sbjct: 1988 RNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATY 2047
Query: 220 EPDYKASFDDELKSFKERIRNRA---KEKLDEALKEVE----EEER 258
+ +Y L E+I+ + K K+D ++ ++ E R
Sbjct: 2048 KEEY-----ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088
Score = 31.4 bits (71), Expect = 0.52
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 36 RVER--MEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLD--ELKKALAELEK 91
+ ER ++R + K Q E + L+ LE+ L QA N LD + L L+K
Sbjct: 2318 KTERPDTHKKRSDLLKIQGEFQVKLRILEK--SLLNALSQASGNILDDDSVISTLETLKK 2375
Query: 92 EAANIRKKEEDLKKKEK 108
E I K E+ + +
Sbjct: 2376 ETTEIALKVEETETVMQ 2392
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 34.3 bits (79), Expect = 0.074
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 34 QARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVES---------EQAGANNLDELKK 84
QA+++ +E E + + + L ++ +L + + A +K
Sbjct: 922 QAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKS 981
Query: 85 ALAELEKEAANIRKKE---EDLKKKE 107
+ + ++ EDL
Sbjct: 982 SAETYKNTLLAELERLQKIEDLHHHH 1007
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 33.5 bits (77), Expect = 0.11
Identities = 12/71 (16%), Positives = 29/71 (40%)
Query: 38 ERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIR 97
RM E+ + ++++E E+ + +E+ K ES + ELK + +
Sbjct: 166 SRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGP 225
Query: 98 KKEEDLKKKEK 108
+ + + +
Sbjct: 226 RGSRYDEAEGR 236
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 32.2 bits (73), Expect = 0.15
Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 6/80 (7%)
Query: 3 DYSKWKDIEISDDEDETHPNI------DTPSLFRWRHQARVERMEEQRLENEKFQQEKEK 56
D K + + P + W+++ V ++E +R + K++
Sbjct: 113 DKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKR 172
Query: 57 TLKTLEETKKKLVESEQAGA 76
+
Sbjct: 173 AFTKKVASANATAAESDVAK 192
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 33.3 bits (76), Expect = 0.15
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 36 RVER--MEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLD--ELKKALAELEK 91
E M+ +R + K E + LK LE+ + L E + N L+ EL L L+K
Sbjct: 2138 TEENAEMQRKREDLIKLNTEYKLKLKNLEK--RLLEELNNSQGNMLENDELMVTLNNLKK 2195
Query: 92 EAANIRKKEEDLKKKEK 108
EA NI KK + ++
Sbjct: 2196 EAMNIEKKLSESEEFFP 2212
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical
protein, structural genomics, functional assignment;
HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.26.2.4
Length = 162
Score = 31.5 bits (72), Expect = 0.21
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 203 IDPRACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEE 256
ID R + + S ++ K ++ AK K++ KE+E+
Sbjct: 42 IDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELEDV 95
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.1 bits (72), Expect = 0.33
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 32 RHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESE-QAGANNLDELKKALAELE 90
R+E+ RLE +K + E E+ +K+L+E E + A KA AE
Sbjct: 675 HEAQRLEQEARGRLERQKILDQSEA-----EKARKELLELEAMSMAVESTGNAKAEAESR 729
Query: 91 KEAANIRKKEEDLKKKEK 108
EAA I + L+ K K
Sbjct: 730 AEAARIEGEGSVLQAKLK 747
Score = 28.2 bits (62), Expect = 5.4
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 34 QARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEA 93
+AR E +E + + + + + +E E + + + E E E
Sbjct: 701 KARKELLELEA-MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759
Query: 94 ANIRKKEE 101
++K E
Sbjct: 760 ERVKKVRE 767
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 31.1 bits (70), Expect = 0.38
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 29 FRWRHQARVERMEEQRLENEK-FQQEKEKTLKTLEETKKKLVESEQA 74
W Q +E++EE+R K + +K K ++
Sbjct: 144 VGWGKQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIK 190
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 30.4 bits (68), Expect = 0.58
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 6 KWKDIEISDDEDETHPNIDTPSL------FRWRHQARVERMEEQRLENEKFQQEKEKTLK 59
K + + P L W++QA +EE+R E K K+K L
Sbjct: 116 KRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLM 175
Query: 60 TLEETKKKLVESEQAGANNLDELKKALAEL 89
L + +K VE + +D+ + L
Sbjct: 176 RLRKQAEKNVEKK------IDKYTEVLKTH 199
>3ftt_A Putative acetyltransferase sacol2570; galactoside
O-acetyltransferase, enzyme, structural genomics,
acyltransferase; 1.60A {Staphylococcus aureus subsp}
PDB: 3v4e_A*
Length = 199
Score = 29.8 bits (68), Expect = 0.83
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 223 YKASFDDELKSFKERIRNRAKEKLDE--ALKEVEEEERQKRL 262
Y A+FD L R RAK+ E + +R++ +
Sbjct: 13 YDANFDQYL----INERARAKDICFELNHTRPSATNKRKELI 50
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 30.8 bits (70), Expect = 0.84
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 31 WRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELK------- 83
R QAR++ + + K++ E E L L+ V +EQ L +L+
Sbjct: 450 ARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNST-VLAEQ--KAKLVKLRAERDPEK 506
Query: 84 --KALAELEKEAANIRKKEED 102
AL ++ A N K+ D
Sbjct: 507 VKAALDKITWAAGNPDDKDPD 527
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 30.1 bits (68), Expect = 0.94
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 3/105 (2%)
Query: 29 FRWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVE---SEQAGANNLDELKKA 85
FR + VE M + + ++T L E + E Q E K
Sbjct: 152 FRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKH 211
Query: 86 LAELEKEAANIRKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKK 130
+ E + + + P + NK+
Sbjct: 212 TGNMADEPETKPSSTSGGLVPRGSSGMILIIYAHPYPHHSHANKR 256
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane
protein, membrane fusion protein complex, coiled coil,
transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Length = 65
Score = 27.8 bits (62), Expect = 1.0
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 55 EKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKI 109
+ +++E + + E++Q G ++EL + +LE+ + + E+L K KI
Sbjct: 5 NRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKI 59
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 29.9 bits (68), Expect = 1.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 72 EQAGANNLDELKKALAELEKEAANIRKKEE 101
+ A NL L++ +A LEK + E
Sbjct: 343 QVAKVRNLPRLEERIAALEKLVQKLEALSE 372
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 30.2 bits (67), Expect = 1.2
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 47 NEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEK-------EAANIRKK 99
++ F K +L +K +S N ++ ++ A+ ++R +
Sbjct: 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSR 121
Query: 100 EEDLKKK 106
E L++K
Sbjct: 122 IEILRRK 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 53 EKEKTLKTLEETKKKLVESEQAGANNLDELKKAL-AELE 90
EK + LK L + KL + A A L A+ A +E
Sbjct: 18 EK-QALKKL-QASLKLYADDSAPA--L-----AIKATME 47
Score = 28.0 bits (61), Expect = 2.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 10/33 (30%)
Query: 90 EKEAANIRKKEEDLKKKEKITPWNVDTISKPGF 122
EK+A ++K + LK D S P
Sbjct: 18 EKQA--LKKLQASLKLYA---D---D--SAPAL 40
Score = 26.5 bits (57), Expect = 9.3
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 142 EKEQEMKAFVKENEKLIKQYA 162
EK+ +K+ + +K YA
Sbjct: 18 EKQA-----LKKLQASLKLYA 33
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 29.9 bits (68), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 72 EQAGANNLDELKKALAELEKEAANIRKKEED 102
A LD++ + L +LEK A + +
Sbjct: 338 SAARIRQLDDMARRLQQLEKRLAAVTSSGDA 368
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 29.0 bits (65), Expect = 1.4
Identities = 2/37 (5%), Positives = 3/37 (8%), Gaps = 1/37 (2%)
Query: 31 WRHQARVERMEEQRLENEK-FQQEKEKTLKTLEETKK 66
W+ A
Sbjct: 141 WKAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
(guanine-7-)-methyltransferase, structural GEN
infectious diseases; 2.35A {Staphylococcus aureus subsp}
Length = 269
Score = 29.5 bits (67), Expect = 1.5
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 20 HPNIDTPSLFRWRHQARVERMEEQR---LENEKFQQEKEKTLKTLEETKKK 67
H NID WRH+ ++ R +R +E ++ L+ + KK
Sbjct: 223 HANID-----AWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKK 268
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.9 bits (66), Expect = 1.5
Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
Query: 31 WRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELE 90
+ ++ + +K E+ + EE + ++S+++ + + + + L E E
Sbjct: 427 YSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 486
Query: 91 KEAANIRKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKAF 150
KE R K E + K+ + ++ + ++ E+ E +
Sbjct: 487 KEIEVERVKAESAQASAKMLHEMQRKNEQ----MMEQKERSYQEHLKQLTEKMENDRVQL 542
Query: 151 VKENEKLIKQ 160
+KE E+ +
Sbjct: 543 LKEQERTLAL 552
Score = 28.4 bits (62), Expect = 4.2
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 34 QARVERMEEQRLENEKFQQEKEKTL---------KTLEETKKKLVESEQAGANNLDELKK 84
QA + + E + +NE+ ++KE++ K + + L E E+ A L E ++
Sbjct: 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559
Query: 85 ALAE-LEKEAANIRKKEEDLKKKEK 108
L E +KE+ ++ + +DL+ K +
Sbjct: 560 LLKEGFQKESRIMKNEIQDLQTKMR 584
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 29.8 bits (66), Expect = 1.7
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 48 EKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKE 107
+ F ++ K + E++ G N DE+KKA +LEK +RK+E K+ E
Sbjct: 320 KDFLSSNKELAGKALNFNKAVAEAKSTG--NYDEVKKAQKDLEKS---LRKREHLEKEVE 374
Query: 108 KITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQYANYL 165
K +K ++K + + ++ A+ + + + ++ ++ L
Sbjct: 375 KKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKL 432
Score = 27.5 bits (60), Expect = 8.9
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 4/142 (2%)
Query: 37 VERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANI 96
+ +E+ + E ++E EK L++ K K+ E++ + DE+ + + A
Sbjct: 356 QKDLEKSLRKREHLEKEVEKKLESKSGNKNKM-EAKAQANSQKDEIFALINKEANRDARA 414
Query: 97 RKKEEDLKKKEKITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEK-EQEMKAFVKENE 155
++LK ++ ++ ISK K + G+ D K E+ +KA +
Sbjct: 415 IAYTQNLKGIKRELSDKLEKISKD--LKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVK 472
Query: 156 KLIKQYANYLVIWCINLAMDEK 177
L + +N A++E
Sbjct: 473 DLGINPEWISKVENLNAALNEF 494
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 29.4 bits (67), Expect = 2.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 215 KIQIAEPDYKASFDDELKS----FKERIRNRAKEKLDEALKE 252
I EP+ + D+ELK F+ R+ E L+ + E
Sbjct: 19 IINAMEPEMEKLSDEELKGKTAEFRARLEK--GEVLENLIPE 58
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 29.0 bits (64), Expect = 2.2
Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 48 EKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKE 107
+ E EK K +E K + + +A+ L + ++ EDL+ +
Sbjct: 104 AAKRTEIEKWRKEFKEQWMKEQK----------RMNEAVQALRRAQLQYVQRSEDLRARS 153
Query: 108 KITPWNVDTISKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQYANYLVI 167
+ +P + + PG +K ++ ++ + +E E +A V+E +
Sbjct: 154 QGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQR 213
Query: 168 WCINL 172
++
Sbjct: 214 IVSHV 218
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 27.2 bits (61), Expect = 2.5
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 39 RMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIR 97
R + +K + E + E E A D ++ L + E+E A IR
Sbjct: 5 HHHSSRENLY---FQGQKESRACLER---IQELEDLLAKEKDNSRRMLTDKEREMAEIR 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 29.1 bits (66), Expect = 2.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 215 KIQIAEPDYKASFDDELKS----FKERIRNRAK-EKLDEALKE 252
+ D + D EL++ FK R+ ++ E LD+ L E
Sbjct: 53 YVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDDLLPE 95
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 29.1 bits (66), Expect = 2.7
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 215 KIQIAEPDYKASFDDELKS----FKERIRNRAKEKLDEALKE 252
I DY+ DD LK FKER+ D+ L E
Sbjct: 28 DIDAIRGDYENLSDDALKHKTIEFKERLEK--GATTDDLLVE 67
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding
protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A
3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A
3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A
3h3d_X
Length = 351
Score = 28.8 bits (65), Expect = 2.7
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 137 EKSDEEKEQEMKAFVKEN-EKLIK-QYANYLVIWCINLA-MDEKFDLMDHVAHQCICMQY 193
E E+ + + ++ E+L++ QY NY++ + ++K ++ +
Sbjct: 190 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI------RGK 243
Query: 194 LLELSK 199
+L LS+
Sbjct: 244 VLALSQ 249
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 28.9 bits (65), Expect = 2.9
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 2/92 (2%)
Query: 3 DYSKWKDIEISDDEDETHPNIDTPSLFRWRHQARVERMEEQR--LENEKFQQEKEKTLKT 60
++S + D +E + RWR +R + L+ + + +
Sbjct: 421 EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS 480
Query: 61 LEETKKKLVESEQAGANNLDELKKALAELEKE 92
L E E+ L EL + EL
Sbjct: 481 LPEPDVLAAEAMGELVQALSELDALMRELGAS 512
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 28.2 bits (63), Expect = 3.2
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
Query: 1 MVDYSKWKDIEISDDEDETHPNIDTPSLFRWRHQARVERMEEQRLENEKFQQEKEKTLKT 60
M K + + DE E I+ + + ++ +EE E EK T +
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 61 LEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEE 101
L K ++ E E + + A+ E N R++
Sbjct: 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFE----NFRRRTR 97
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 28.6 bits (65), Expect = 3.3
Identities = 6/42 (14%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 222 DYKASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQKRLG 263
++ D +K ++++ + A K ++++R + +G
Sbjct: 246 AFEPEDTDAIK---AKMKDLVGADIAAAYKIQKKQDRYEAVG 284
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 28.6 bits (63), Expect = 3.4
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 41 EEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKE 100
+ E ++++ + ++L V S + +L+E + L + A + K+
Sbjct: 56 PTEEAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKER 115
Query: 101 EDLKKKEK 108
L+++ +
Sbjct: 116 AALEEEIQ 123
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 28.8 bits (65), Expect = 3.6
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 215 KIQIAEPDYKASFDDELKS----FKERIRNRAKEKLDEALKEV 253
KI E D ++ + EL KE++ + E DE L E
Sbjct: 20 KINQIESDLRSKKNSELIRLSMVLKEKVNS--FEDADEHLFEA 60
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 28.2 bits (64), Expect = 4.0
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 215 KIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQKRLG 263
+ ++ L R+ A+ +L +A + +++ER ++
Sbjct: 230 RWDWQPEPV----NEALN---ARVAALAEARLSDAYRITDKQERYAQVD 271
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD,
tRNA(M1G37)methyltrans tRNA modification; HET: SAH;
1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB:
1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A*
Length = 274
Score = 27.9 bits (63), Expect = 4.0
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 20 HPNIDTPSLFRWRHQARVERMEEQR---LENEKFQQEKEKTLKTLEETKKKLVESEQ 73
H I +WR + ++R +R LE E+ K LK + L
Sbjct: 221 HEEIR-----KWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNSLEHHHH 272
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 28.1 bits (62), Expect = 4.3
Identities = 15/115 (13%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Query: 52 QEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKITP 111
+E +K + ++ KK E + ++ L+K N K + ++ +K
Sbjct: 101 KEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGA 160
Query: 112 WNVDTI-SKPGFTKTVVNKKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQYANYL 165
+ + K K +++ + + EQ+M ++ + + + + ++
Sbjct: 161 TQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHI 215
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 28.0 bits (63), Expect = 5.0
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 221 PDYKASFDDELKSFKERIRNRAKEKLDEALKEV 253
P ++ E + + IR+RA + + +V
Sbjct: 317 PAKFKEYEAERNCYYQLIRDRA-DIFKQEAAQV 348
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 28.1 bits (63), Expect = 5.6
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 135 QGEKSDEE-------KEQEMKAFVKENEKLIKQYANYLVIWCINLAMDEK 177
QG K D + + + F + LI+QY Y ++
Sbjct: 538 QGAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPH 587
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 221 PDYKASFDDELKSFKERIRNRAKEKLDEALKE 252
+ K ++ EL + +++RA + A KE
Sbjct: 315 AENKKIYEQELVDLRNMLKSRA-DVFVTAAKE 345
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 28.1 bits (63), Expect = 5.8
Identities = 8/82 (9%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 43 QRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEED 102
+++ +++ + +++ + ++ + K E E R ++
Sbjct: 546 KKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDI 605
Query: 103 LKKKEKITPWNVDTISKPGFTK 124
K++K + F K
Sbjct: 606 KLKEKK--EGKEMYVKFDDFAK 625
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 26.0 bits (57), Expect = 5.8
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 37 VERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANI 96
V R++ E + + E L L+ T++ L + Q + L + +AE++K +
Sbjct: 8 VSDKLRWRMKEEMDRAQAE--LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65
Query: 97 RKKEEDLKK 105
+KK+E+L
Sbjct: 66 KKKDEELSS 74
>1f1m_A OSPC, outer surface protein C; LYME disease, HB19, helical bundle,
dimer, immune system; 1.80A {Borrelia burgdorferi} SCOP:
a.24.12.1 PDB: 1ggq_A
Length = 164
Score = 27.2 bits (60), Expect = 5.8
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 53 EKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAAN 95
+K +K E K ++ ++++ +LK +L KE
Sbjct: 72 KKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVT 114
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 27.9 bits (63), Expect = 5.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 227 FDDELKSFKERIRNRAKEKLDEALKEVEEEERQKRLGPGG 266
++++FK+R + + L LK+ ++ Q ++G GG
Sbjct: 563 SAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQHQIGQGG 602
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 27.9 bits (63), Expect = 6.7
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 225 ASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQKRL 262
+ D++ E + + +L AL +++R+ L
Sbjct: 278 LDYQDDVL---EALSAAVRPELSAALTIAGKQDREAEL 312
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 26.4 bits (58), Expect = 6.7
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 34 QARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAG--------ANNLDELKKA 85
Q +++ + +Q+ + + E +K L +E V + G + ELK+
Sbjct: 19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEK 78
Query: 86 LAELEKEAANIRKKEEDLKKKEK 108
+ LE + ++E+ L +K K
Sbjct: 79 IETLEVRLNALERQEKKLNEKLK 101
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.6 bits (62), Expect = 7.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 12/41 (29%)
Query: 78 NLDELKKALAELEKE------------AANIRKKEEDLKKK 106
NL EL++ L E+ KE AA++R E+ L+++
Sbjct: 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQ 435
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 27.3 bits (60), Expect = 7.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 53 EKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLK 104
+ + T +++ +KL + +++K +E+E ++ K ED K
Sbjct: 37 DLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTK 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 26.5 bits (58), Expect = 7.4
Identities = 8/59 (13%), Positives = 26/59 (44%)
Query: 62 EETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKITPWNVDTISKP 120
++ ++ L+E G +++L+ + EL+++ N ++L ++ +
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNR 61
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding,
mitochondrial mRNA,, membrane, mitochondrion; HET: CIT;
2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A
Length = 369
Score = 27.4 bits (61), Expect = 7.5
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 137 EKSDEEKEQEMKAFVKEN-EKLIK-QYANYLVIWCINLAMDEKFDLMDHVAHQCICMQ-Y 193
E E ++ + +K+ LI+ QY NY++ + + +++D +
Sbjct: 195 EFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANN 254
Query: 194 LLELSK 199
++E SK
Sbjct: 255 VVEYSK 260
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 27.2 bits (60), Expect = 7.6
Identities = 6/69 (8%), Positives = 25/69 (36%)
Query: 38 ERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIR 97
++ + ++ + L ++E ++L E A+ + + E++ +
Sbjct: 210 MQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLG 269
Query: 98 KKEEDLKKK 106
+ + +
Sbjct: 270 VQVQQFQDV 278
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 27.5 bits (62), Expect = 8.0
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 215 KIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEEERQKRLGPGGLDPVEVFE 274
+ ++ L R+ A+ +L +A + +++ER ++ +
Sbjct: 236 RWDWQPEPV----NEALN---ARVAALAEARLSDAYRITDKQERYAQVD-------VIKS 281
Query: 275 SLPDVLKKCFELQDTAMLQEAIASL 299
L E D L E + ++
Sbjct: 282 ETIATLLAEDETLDENELGEILHAI 306
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix
bundle, plant hormone signal transduction, cytokinin S
transduction; 1.45A {Medicago truncatula}
Length = 153
Score = 26.8 bits (59), Expect = 8.0
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 72 EQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEK 108
N+D ++ L ++++E ++ K E L + E+
Sbjct: 102 NFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQ 138
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.5 bits (62), Expect = 8.6
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 35 ARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVES---EQAGANNLDELKKALAELEK 91
++V R+ +E E+ L + + K V+S E+A L+ L +
Sbjct: 383 SKV-RLRSFTTPPN--LKELEQKLDEVRKEKDAAVQSQEFEKAA-----SLRDTEQRLRE 434
Query: 92 EAANIRKKEEDLKKKEKIT 110
+ + +K ++ + +E
Sbjct: 435 QVEDTKKSWKEKQGQENSE 453
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 26.5 bits (58), Expect = 8.6
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 87 AELEKEAANIRKKEEDLKKKEKI----TPWN----VDTISKPGFTKTVVNKKPPLQQGEK 138
+ + + ++ + L + KI PW+ V S + + L +
Sbjct: 83 TQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFS---IPEDTEIFEGSLDLEQM 139
Query: 139 SDEEKEQEMKAF 150
+ +K F
Sbjct: 140 RLRRVQTGIKLF 151
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 27.4 bits (61), Expect = 8.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 135 QGEKSDEE-------KEQEMKAFVKENEKLIKQYANYLV 166
QG + D++ K ++AF ++ E +++QY+NY V
Sbjct: 516 QGREYDKDGNLRPWWKNSSVEAFKRQTECMVEQYSNYSV 554
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 27.1 bits (59), Expect = 8.7
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 54 KEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKITPWN 113
+ L+ + K ++ ++ A +E K + + +K K K+ +
Sbjct: 337 RNTILRQAKNHKLRMDKAAAALEAKSEE--KGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Query: 114 VDTISKPGFTKTVVNKKPPLQQ 135
KP K KKP ++
Sbjct: 395 AAATKKPAADKKPAEKKPTTEE 416
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription,
RNA binding protein; 2.69A {Saccharomyces cerevisiae}
PDB: 4dzs_A 3bx2_A 3bx3_A
Length = 333
Score = 27.1 bits (60), Expect = 8.9
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 137 EKSDEEKEQEMKAFVKEN-EKLIK-QYANYLVIWCINLAMDE-KFDLMDHVAHQCICMQY 193
+ E+ + + +KL + NY+V + I ++ K+D + H
Sbjct: 178 DHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK--PR 235
Query: 194 LLELSKS 200
+ELS
Sbjct: 236 AIELSIH 242
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 27.1 bits (60), Expect = 8.9
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 39 RMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRK 98
+M E+ ++ E + +++ L+E + LK+ +A+LE + K
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSN-------NQKIVNLKEKVAQLEAQCQEPCK 53
Query: 99 KEEDLKK 105
+
Sbjct: 54 DTVQIHD 60
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 26.5 bits (59), Expect = 9.3
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 40 MEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRK 98
MEE+ EN +++ E + + +++L +E+ D+ + LA+ + N RK
Sbjct: 1 MEERNHENTL-EKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFD----NYRK 54
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 27.2 bits (59), Expect = 9.6
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 197 LSKSLNIDPRACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKEKLDEALKEVEEE 256
L +D + +G FS+I E + + +K +++ E L + ++E+
Sbjct: 124 LLSIFKMDAKGTLGGLFSQILQGEDIVR---ERAIKFLSTKLKTLPDEVLTKEVEELILT 180
Query: 257 ERQKRLGPGGLDPVEVFESLPDVLKKCFELQDTAMLQEAIASLSPEEATYHMK 309
E +K L + +F + LK + L E +A + E T++
Sbjct: 181 ESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPS 233
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.1 bits (61), Expect = 9.7
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 55 EKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKE------------AANIRKKEED 102
T+ ++ + K + + E +K + ++E E AA +R +
Sbjct: 597 RATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLE 656
Query: 103 LKKK 106
LK +
Sbjct: 657 LKAE 660
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 27.1 bits (60), Expect = 9.7
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 32 RHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELE 90
Q V+++ E+ E+ + ++ L E + + L++ L ++
Sbjct: 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVN-------QQFVTRLQQQLVDIR 53
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 26.0 bits (57), Expect = 9.7
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 32 RHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEK 91
+ + M+E+ ++ ++ E K LEE L++ + + + LA+ E+
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 92 EAANIRKKEEDLKKKEK 108
+ K + L+ K K
Sbjct: 70 RCDQLIKNKIQLEAKVK 86
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding,
structu genomics, protein structure initiative; NMR
{Bacteroides vulgatus}
Length = 74
Score = 25.1 bits (55), Expect = 9.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 141 EEKEQEMKAFVKENEKLIKQYANYLVIWC 169
+ +E+K+FV++ + K L WC
Sbjct: 10 MKNYEELKSFVRKYRRFPKSTEGNLGGWC 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.364
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,384,549
Number of extensions: 332225
Number of successful extensions: 1954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 320
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.6 bits)