RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy157
(347 letters)
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 220 bits (563), Expect = 4e-72
Identities = 107/199 (53%), Positives = 145/199 (72%), Gaps = 24/199 (12%)
Query: 148 KAFVKENEKLIKQY------------------------ANYLVIWCINLAMDEKFDLMDH 183
K FV++ EK IK + ANYLVIWCI+L ++EK LM+
Sbjct: 2 KTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQ 61
Query: 184 VAHQCICMQYLLELSKSLNIDPRACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAK 243
VAHQ I MQ++LEL+KSL +DPRAC FF+KI+ A+ Y F+DEL++FKER+R RAK
Sbjct: 62 VAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAK 121
Query: 244 EKLDEALKEVEEEERQKRLGPGGLDPVEVFESLPDVLKKCFELQDTAMLQEAIASLSPEE 303
++++A+KE EEEER+KRLGPGGLDPVEV+ESLP+ L+KCF+++D MLQ+AI+ + P +
Sbjct: 122 LRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISKMDPTD 181
Query: 304 ATYHMKRCVDSGLWVPDAK 322
A YHM+RC+DSGLWVP++K
Sbjct: 182 AKYHMQRCIDSGLWVPNSK 200
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 32.5 bits (73), Expect = 0.088
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 44 RLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIR 97
+ +K ++K++ LE K + +L + E + A R
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAK--DIWNTDLKAFEVGYQEFLQRDAEAR 759
Score = 25.9 bits (56), Expect = 8.5
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 10/118 (8%)
Query: 6 KWKDIEISDDEDETHPNIDTPSLF--RWRHQARVERMEEQRLENEKFQQEKEKTLKTLEE 63
K ++ I + E+ P + + E++ + + + E+ T
Sbjct: 625 KPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENV 684
Query: 64 TKKKLVESEQAGA------NNLDELKKALAELEKEAANIRKKEEDLKKKEKITPWNVD 115
+L + + +L K+ + E+L K WN D
Sbjct: 685 INGPEELYGTYEYLLGMRIWSLTKERYQ--KLLKQKQEKETELENLLKLSAKDIWNTD 740
>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
domain 1 {Propionibacterium freudenreichii, subsp.
shermanii [TaxId: 1744]}
Length = 557
Score = 31.6 bits (71), Expect = 0.13
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 30 RWRHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNL------DELK 83
R QAR++ + + K++ E E L L+ ++ ++A L +++K
Sbjct: 447 AARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKVK 506
Query: 84 KALAELEKEAANIRKKEED 102
AL ++ A N K+ D
Sbjct: 507 AALDKITWAAGNPDDKDPD 525
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 28.9 bits (64), Expect = 0.93
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 57 TLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKIT 110
T + EE + +E E A +K LAE E + EE L++ +I+
Sbjct: 271 TFLSKEEIEA--LEQELREAPEKRAAQKTLAE---EVTKLVHGEEALRQAIRIS 319
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
spirochete (Borrelia burgdorferi), different strains
[TaxId: 139]}
Length = 162
Score = 28.1 bits (63), Expect = 1.0
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 53 EKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAAN 95
+K +K E K ++ ++++ +LK +L KE
Sbjct: 70 KKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVT 112
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 28.5 bits (63), Expect = 1.2
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 55 EKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKITPWNV 114
E+ + LE L + + + + L +++ + + K + W +
Sbjct: 6 EQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTR-----KIFADLGAWQI 60
Query: 115 DTISKP 120
+++
Sbjct: 61 AQLARH 66
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 367
Score = 28.4 bits (63), Expect = 1.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 307 HMKRCVDSGLWVPDAKKA 324
H+ R V G++ P +A
Sbjct: 13 HLGRAVYGGIYEPGHPQA 30
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 28.1 bits (62), Expect = 1.6
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 22/79 (27%)
Query: 45 LENEKFQQEKEKTLKTLEETKKKLVESEQAGANNL----------------DELKKALAE 88
LE + E T++ K L+E Q+G N+ +E++K +AE
Sbjct: 171 LEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAE 230
Query: 89 LEKEAANIRKKEEDLKKKE 107
+EKE KEE+ KKK+
Sbjct: 231 IEKE------KEENEKKKQ 243
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 27.8 bits (61), Expect = 1.9
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 57 TLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANIRKKEEDLKKKEKIT 110
T EE + +E + A +L E +K LAE E E+ L +I+
Sbjct: 271 TFLGKEEIDR--LEQSKNEAPHLREAQKTLAE---EVTKFIHGEDALNDAIRIS 319
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 26.7 bits (58), Expect = 3.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 227 FDDELKSFKERIRNRAKEKLDEALKEVEEE 256
FD EL S K+ + R E++DE L++ EE+
Sbjct: 131 FDVELISIKDGGKGRTAEEVDEILRKAEED 160
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 26.4 bits (58), Expect = 3.9
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 39 RMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEA-ANIR 97
R E + K ++ K + ++L + G DE+ +A +L+K +
Sbjct: 109 RRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVT 168
Query: 98 KKEEDLKKKEK 108
+ +E +K KE
Sbjct: 169 QIDELVKHKEG 179
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 25.3 bits (55), Expect = 4.5
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 37 VERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAANI 96
+ER L F +++ + K V + + ++ +L E +
Sbjct: 13 LERQRRNEL-KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71
Query: 97 RKKEEDLKKK 106
RK+ E LK K
Sbjct: 72 RKRREQLKHK 81
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish
(Brachydanio rerio) [TaxId: 7955]}
Length = 165
Score = 26.0 bits (57), Expect = 4.8
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 225 ASFDDELKSFKERIRNRAKEKLDEALKEVEE 255
+ D ++ ER++NR +L+ A++EV++
Sbjct: 125 NNKADIVRQLSERLKNRRTAELECAIEEVKK 155
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase
{Escherichia coli [TaxId: 562]}
Length = 880
Score = 26.6 bits (58), Expect = 4.9
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 51 QQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEAA 94
E L+ +E +K S N EL L L +
Sbjct: 22 DALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDEL 65
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 26.2 bits (57), Expect = 5.8
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 62 EETKKKLVESEQAGANNLDELKKALAE-LEKEAANIRKKEEDLKKKE 107
++ +++ + +GA ELKKAL E L+ A + + +++ +
Sbjct: 329 DDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEI 375
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 165
Score = 25.7 bits (56), Expect = 5.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 228 DDELKSFKERIRNRAKEKLDEALKEVEE 255
D L +F RI N A ++ A +VE+
Sbjct: 125 HDILSAFDTRIDNNAAQEFATATGQVEK 152
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 127
Score = 25.5 bits (55), Expect = 6.4
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 140 DEEKEQEMKAFVKENEKLIKQYANYLVIWCINLAMDEKFDLMDHVAHQCICMQYLLELSK 199
+ E+ M+A + +L + A + ++ + +
Sbjct: 22 KKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKG 81
Query: 200 SLNIDPRACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKEKLD 247
+ I R K+ + + + +K E +R RA E+++
Sbjct: 82 AAVISRRDT----GEKVTADLQGIEETLRELMKDILENLRTRAWERME 125
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 25.7 bits (56), Expect = 7.2
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 35 ARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNLDELKKALAELEKEA- 93
+R + + E ++ K E KK+ E ++ G D+ K+ E++K
Sbjct: 105 TTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTD 164
Query: 94 ANIRKKEEDLKKKEK 108
I K +E + K++
Sbjct: 165 EFIEKLDEVFEIKKE 179
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 25.7 bits (56), Expect = 7.7
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 32 RHQARVERMEEQRLENEKFQQEKEKTLKTLEETKKKLVESEQAGANNL-----------D 80
++ + L E+ + + EE + + + + L D
Sbjct: 93 SNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSED 152
Query: 81 ELKKALAELEKEA-ANIRKKEEDLKKKEK 108
E K+A AE++K I K ++ +KKE+
Sbjct: 153 ETKRAEAEIQKITDEFIAKADQLAEKKEQ 181
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 25.7 bits (56), Expect = 7.8
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 129 KKPPLQQGEKSDEEKEQEMKAFVKENEKLIKQ---YANYLV-IWCINLAMDEKFDLMDHV 184
K P + + E E ++ K +KL + +V ++ N D+ D
Sbjct: 59 KYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDET 118
Query: 185 AHQCICMQYLLELSKSLNIDPRACIGSFFSKIQIAEPDYKASFDDELKSFKERIRNRAKE 244
I + + L C+ F + + DY +F ++ + + +
Sbjct: 119 RTHVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEA 178
Query: 245 KLD 247
+ D
Sbjct: 179 QHD 181
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 221 PDYKASFD-DELKSFKERIRNRAKEKLDEALKEVEEEERQKRL 262
D+ + + DELK + IR E K V E+
Sbjct: 245 ADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSY 287
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 26.1 bits (57), Expect = 8.7
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 238 IRNRAKEKLDEA---LKEVEEEERQKRLGPGGL 267
+ N E + ++E+EE E LG GGL
Sbjct: 93 LENACDEATYQLGLDMEELEEIEEDAGLGNGGL 125
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 155
Score = 25.2 bits (55), Expect = 9.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 228 DDELKSFKERIRNRAKEKLDEALKEVEE 255
+ L + KER NR +L+ A E +
Sbjct: 116 AEMLHALKERYENRPIVELEIAAMEQMK 143
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 25.8 bits (56), Expect = 9.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 238 IRNRAKEKLDEA---LKEVEEEERQKRLGPGGL 267
++ L L ++ EEE LG GGL
Sbjct: 83 WYQDVQDSLKAYDINLTDLLEEEIDPALGNGGL 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.364
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,325,666
Number of extensions: 65865
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 126
Length of query: 347
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,226,816
Effective search space: 320198976
Effective search space used: 320198976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.9 bits)