Query psy15701
Match_columns 112
No_of_seqs 106 out of 1061
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:18:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03388 PAP2_SPPase1 PAP2_like 99.9 2.9E-22 6.4E-27 134.6 12.0 101 8-108 1-102 (151)
2 cd03395 PAP2_like_4 PAP2_like_ 99.8 3.8E-19 8.3E-24 122.1 12.1 102 6-107 18-127 (177)
3 cd03392 PAP2_like_2 PAP2_like_ 99.8 2.2E-18 4.9E-23 118.5 12.2 98 5-107 23-124 (182)
4 PLN02525 phosphatidic acid pho 99.8 1.1E-18 2.5E-23 130.8 11.4 94 13-106 8-106 (352)
5 KOG2822|consensus 99.8 8.4E-19 1.8E-23 130.6 6.4 107 4-110 75-185 (407)
6 cd03391 PAP2_containing_2_like 99.8 1.4E-17 3.1E-22 112.9 11.6 99 8-107 11-114 (159)
7 cd03385 PAP2_BcrC_like PAP2_li 99.7 4.1E-17 8.9E-22 108.7 10.5 91 10-103 1-96 (144)
8 cd03389 PAP2_lipid_A_1_phospha 99.7 7.9E-17 1.7E-21 111.7 11.5 104 4-107 15-141 (186)
9 cd03393 PAP2_like_3 PAP2_like_ 99.7 2.1E-17 4.6E-22 107.8 4.9 80 30-109 3-83 (125)
10 PRK11837 undecaprenyl pyrophos 99.7 7.3E-16 1.6E-20 108.2 11.8 96 6-103 19-122 (202)
11 PRK09597 lipid A 1-phosphatase 99.6 7.5E-15 1.6E-19 101.6 10.0 89 4-102 48-137 (190)
12 cd03382 PAP2_dolichyldiphospha 99.6 2.8E-14 6E-19 96.7 10.9 57 42-103 44-100 (159)
13 PRK10699 phosphatidylglyceroph 99.6 1.2E-14 2.6E-19 104.4 8.8 95 6-100 33-173 (244)
14 cd03381 PAP2_glucose_6_phospha 99.5 1.2E-13 2.6E-18 98.9 8.8 67 37-103 12-91 (235)
15 cd03394 PAP2_like_5 PAP2_like_ 99.5 1.5E-13 3.3E-18 87.2 7.8 60 40-107 3-62 (106)
16 cd03383 PAP2_diacylglycerolkin 99.4 1.5E-12 3.2E-17 83.4 7.3 51 44-107 12-62 (109)
17 cd03390 PAP2_containing_1_like 99.4 4E-12 8.6E-17 88.4 7.9 63 46-108 52-134 (193)
18 cd03396 PAP2_like_6 PAP2_like_ 99.4 1.2E-11 2.6E-16 86.4 10.2 61 46-106 73-144 (197)
19 cd03384 PAP2_wunen PAP2, wunen 99.3 8.2E-12 1.8E-16 83.9 6.5 66 44-109 8-97 (150)
20 smart00014 acidPPc Acid phosph 99.2 4.2E-11 9E-16 76.7 6.9 61 49-109 4-70 (116)
21 PLN02715 lipid phosphate phosp 99.2 1.2E-10 2.6E-15 86.9 9.5 65 45-109 128-210 (327)
22 PLN02250 lipid phosphate phosp 99.1 4.4E-10 9.5E-15 83.6 10.0 63 46-108 104-185 (314)
23 PLN02731 Putative lipid phosph 99.1 3.6E-10 7.9E-15 84.5 7.9 64 46-109 123-204 (333)
24 cd01610 PAP2_like PAP2_like pr 99.0 1.2E-09 2.6E-14 69.1 7.4 59 49-107 12-74 (122)
25 cd03380 PAP2_like_1 PAP2_like_ 99.0 1.9E-09 4.1E-14 75.8 7.8 60 49-108 102-167 (209)
26 KOG3146|consensus 99.0 6.5E-09 1.4E-13 72.8 9.9 72 34-109 47-120 (228)
27 cd03397 PAP2_acid_phosphatase 99.0 2.6E-09 5.6E-14 76.5 8.2 55 54-108 115-174 (232)
28 PF01569 PAP2: PAP2 superfamil 98.9 2E-10 4.3E-15 74.0 0.8 65 44-108 4-73 (129)
29 COG0671 PgpB Membrane-associat 98.7 4.4E-07 9.6E-12 62.2 10.1 61 44-107 95-157 (232)
30 KOG4268|consensus 98.5 1.5E-07 3.3E-12 63.4 4.6 51 47-98 71-122 (189)
31 cd03398 PAP2_haloperoxidase PA 98.5 2.7E-07 6E-12 65.9 5.6 57 51-107 97-168 (232)
32 KOG3030|consensus 98.4 1E-06 2.2E-11 65.8 7.5 65 46-110 116-205 (317)
33 cd03386 PAP2_Aur1_like PAP2_li 98.3 1.3E-05 2.8E-10 55.4 10.0 69 38-106 54-139 (186)
34 PF14378 PAP2_3: PAP2 superfam 96.2 0.15 3.3E-06 35.1 10.5 19 85-103 127-145 (191)
35 PF02681 DUF212: Divergent PAP 94.5 0.11 2.4E-06 34.7 4.8 50 48-103 9-60 (141)
36 COG3907 PAP2 (acid phosphatase 90.9 1.7 3.8E-05 30.9 7.0 56 45-100 112-178 (249)
37 COG1963 Uncharacterized protei 88.2 1.3 2.9E-05 29.7 4.5 48 50-103 17-66 (153)
38 PF14360 PAP2_C: PAP2 superfam 79.5 1.9 4.1E-05 25.4 2.2 23 86-108 6-28 (74)
39 cd00927 Cyt_c_Oxidase_VIc Cyto 52.6 24 0.00053 20.7 3.0 30 40-69 14-43 (70)
40 COG3301 NrfD Formate-dependent 41.9 1.5E+02 0.0033 22.4 7.6 92 4-101 8-102 (305)
41 PF02937 COX6C: Cytochrome c o 39.4 27 0.00059 20.6 1.9 27 41-67 17-43 (73)
42 COG0597 LspA Lipoprotein signa 39.1 1.3E+02 0.0027 20.6 6.8 41 50-92 100-140 (167)
43 COG0170 SEC59 Dolichol kinase 38.6 1.4E+02 0.0031 21.1 6.7 64 8-71 78-146 (216)
44 PRK14786 lipoprotein signal pe 33.3 72 0.0016 21.4 3.4 19 50-68 89-107 (154)
45 KOG3058|consensus 32.9 23 0.0005 27.2 1.1 25 86-110 211-235 (351)
46 PHA02101 hypothetical protein 32.6 25 0.00055 21.5 1.0 12 59-70 6-17 (101)
47 PRK14769 lipoprotein signal pe 32.4 79 0.0017 21.3 3.5 19 50-68 92-110 (156)
48 PF08196 UL2: UL2 protein; In 31.2 83 0.0018 17.5 2.8 15 84-98 22-36 (60)
49 PRK14773 lipoprotein signal pe 30.4 1.1E+02 0.0023 21.5 4.0 17 84-100 160-176 (192)
50 PRK14787 lipoprotein signal pe 29.8 79 0.0017 21.3 3.2 18 50-67 90-107 (159)
51 PF12270 Cyt_c_ox_IV: Cytochro 28.9 1.8E+02 0.0039 19.3 8.4 45 47-92 43-89 (137)
52 smart00730 PSN Presenilin, sig 26.9 2E+02 0.0043 20.9 5.0 51 20-70 176-231 (249)
53 PRK14797 lipoprotein signal pe 26.9 1E+02 0.0022 20.6 3.3 19 50-68 89-107 (150)
54 PRK14781 lipoprotein signal pe 26.4 1.1E+02 0.0025 20.4 3.5 17 51-67 92-108 (153)
55 PRK14788 lipoprotein signal pe 26.3 1.2E+02 0.0026 21.3 3.7 19 45-63 92-110 (200)
56 PRK14793 lipoprotein signal pe 26.1 1E+02 0.0022 20.5 3.2 19 50-68 88-106 (150)
57 PRK14790 lipoprotein signal pe 25.2 1.2E+02 0.0025 20.8 3.4 19 50-68 101-119 (169)
58 cd02974 AhpF_NTD_N Alkyl hydro 25.0 46 0.001 20.4 1.3 17 83-99 77-93 (94)
59 PRK14791 lipoprotein signal pe 24.9 1.4E+02 0.0031 19.7 3.7 18 51-68 88-105 (146)
60 PRK14780 lipoprotein signal pe 24.7 2.3E+02 0.0051 21.0 5.0 19 50-68 139-157 (263)
61 PRK14792 lipoprotein signal pe 24.0 1.3E+02 0.0029 20.2 3.5 19 50-68 96-114 (159)
62 TIGR03778 VPDSG_CTERM VPDSG-CT 22.3 1.1E+02 0.0023 14.4 2.7 21 88-108 4-24 (26)
63 PF05545 FixQ: Cbb3-type cytoc 21.2 1.5E+02 0.0032 15.6 3.4 15 24-38 17-31 (49)
64 PRK14795 lipoprotein signal pe 20.8 2.8E+02 0.006 18.7 6.0 11 82-92 124-134 (158)
65 PRK14782 lipoprotein signal pe 20.6 2.1E+02 0.0045 19.2 3.9 20 49-68 93-112 (157)
66 PRK14774 lipoprotein signal pe 20.3 2.3E+02 0.0049 19.7 4.1 20 49-68 93-112 (185)
67 COG0601 DppB ABC-type dipeptid 20.3 1.4E+02 0.003 22.5 3.2 17 3-19 55-71 (317)
No 1
>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.
Probab=99.89 E-value=2.9e-22 Score=134.64 Aligned_cols=101 Identities=47% Similarity=0.856 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhhcchhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc-cCCCCCCC
Q psy15701 8 KFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQS-KWSLEYGM 86 (112)
Q Consensus 8 ~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~-~~~~~~SF 86 (112)
|++|.+|..+|++|+..++.+++++++|..++|.+..+...++++..+++++|+.++||||+.++...... .++++|||
T Consensus 1 ~~ld~~~~~it~lg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~SF 80 (151)
T cd03388 1 PFLDYYFAFTALLGTHTFYILFLPFLFWNGDPYVGRDLVVVLALGMYIGQFIKDLFCLPRPSSPPVVRLTMSSAALEYGF 80 (151)
T ss_pred ChHHHHHHHHHHhcchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCchhhhhccccCCCCCC
Confidence 68999999999999987666666667776666667777777778888899999999999999643222211 14789999
Q ss_pred chHHHHHHHHHHHHHHHHHhhc
Q psy15701 87 PSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 87 PSgHt~~a~~~~~~l~~~~~~~ 108 (112)
||||+++++++++.+.+..+++
T Consensus 81 PSgH~~~a~~~~~~l~~~~~~~ 102 (151)
T cd03388 81 PSTHAMNATAISFYLLIYLYDR 102 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999877665443
No 2
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.82 E-value=3.8e-19 Score=122.11 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHhhcchhHHHHHHHHHHHHhcchhhHHH-HHH----HHHHHHHHHHHHHHhhcCCCCCCCc-cccc--c
Q psy15701 6 KNKFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRR-IIT----VWAVVMYIGQSLKDVIQWPRPICPP-AVRV--Q 77 (112)
Q Consensus 6 ~~~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~iK~~~~rpRP~~~~-~~~~--~ 77 (112)
++|.+|.+|..+|.+|+....++++.+.+++.++++... +.. ..+.+..++..+|+.++||||...+ ..+. .
T Consensus 18 ~~~~l~~~~~~it~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~~~~~~~ 97 (177)
T cd03395 18 VHPLLDDLMPFLTGKKLSVPIFLLLALFILFRKGPIGLLILLLVLLAVGFADQLASGFLKPLVARLRPCNALDGVRLVVL 97 (177)
T ss_pred CChhHHHHHHHHHCchhHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 489999999999999987654433334444444333322 211 2234567789999999999999542 2221 1
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 78 SKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 78 ~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
.+++++||||||||+.++++++.+.+..++
T Consensus 98 ~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 127 (177)
T cd03395 98 GDQGGSYSFASSHAANSFALALFIWLFFRR 127 (177)
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 234789999999999999999988766555
No 3
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.79 E-value=2.2e-18 Score=118.50 Aligned_cols=98 Identities=20% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccchHHHHHHHHHhhcchhHHHHHHHHHH-HHh--c-chhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccC
Q psy15701 5 VKNKFLYYFFYIGTYLGDEIFYSIYFPFW-FWN--V-DYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKW 80 (112)
Q Consensus 5 ~~~~~ld~~~~~it~~g~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~ 80 (112)
.++|.+|.++..+|.+|+..+++.+.+++ .|. . +++....+...++.+..++..+|+.++||||...+.. .
T Consensus 23 ~~~~~~~~~~~~it~lg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~-----~ 97 (182)
T cd03392 23 LRTPLLTAFMTAITFLGSPAVLLIIVLLLALLLLLKRRRRAALFLLLALLGGGALNTLLKLLVQRPRPPLHLLV-----P 97 (182)
T ss_pred cCChHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC-----C
Confidence 57899999999999999987655443322 222 2 2234455556667788889999999999999854221 3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 81 SLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 81 ~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
++++|||||||++++++++.+.++..+
T Consensus 98 ~~~~sfPSgHa~~~~~~~~~l~~~~~~ 124 (182)
T cd03392 98 EGGYSFPSGHAMGATVLYGFLAYLLAR 124 (182)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998877655444
No 4
>PLN02525 phosphatidic acid phosphatase family protein
Probab=99.79 E-value=1.1e-18 Score=130.84 Aligned_cols=94 Identities=31% Similarity=0.669 Sum_probs=79.2
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccc-----cccCCCCCCCc
Q psy15701 13 FFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRV-----QSKWSLEYGMP 87 (112)
Q Consensus 13 ~~~~it~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~-----~~~~~~~~SFP 87 (112)
++...+.+|+..++++++++++|..+++.+..++.+++.+..+++.+|+.++||||+.+++.++ +...+.+||||
T Consensus 8 ~f~~~~~l~~~~Fyi~~Lp~l~w~~~~~~~~~lv~ll~~~~~l~~~lKd~v~rPRP~~pp~~ri~~~~~~~~~a~eYsFP 87 (352)
T PLN02525 8 FFSGLSCVVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYVGNCIKDVVSAPRPSCPPVRRVTATKDEEENAMEYGLP 87 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCcchhhhhcccccccCCCCCCCC
Confidence 7888999999999999988899988888888888888888899999999999999997664433 12346899999
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy15701 88 STHAMIAVAIPMASILFTV 106 (112)
Q Consensus 88 SgHt~~a~~~~~~l~~~~~ 106 (112)
||||++++++++++.+++.
T Consensus 88 SgHt~nA~av~~~ll~~l~ 106 (352)
T PLN02525 88 SSHTLNTVCLSGYLLHYVL 106 (352)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999988766654
No 5
>KOG2822|consensus
Probab=99.76 E-value=8.4e-19 Score=130.59 Aligned_cols=107 Identities=42% Similarity=0.768 Sum_probs=94.9
Q ss_pred cccchHHHHHHHHHhhcchhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc--cCC
Q psy15701 4 TVKNKFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQS--KWS 81 (112)
Q Consensus 4 ~~~~~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~--~~~ 81 (112)
..||+++|-+|...|.+|+..||++++++..|..+....+.+...++.+..+++-+|.+++.|||..||++++.. +.+
T Consensus 75 ~~rn~fld~yF~yts~lGsh~FYilfLP~~~W~g~~~ltrdm~~i~~~~~Ylggc~KD~~~lPRP~sPPvvrltls~~~~ 154 (407)
T KOG2822|consen 75 KVRNPFLDVYFSYTSLLGSHVFYILFLPFPFWNGDPYLTRDMTYIWVLVMYLGGCIKDYWCLPRPSSPPVVRLTLSEDTT 154 (407)
T ss_pred HhcCchHHhhhhhhhhhcchhhheeehhhHHhcCChhHhhHHHHHHHHHHHHhhhhhheeecCCCCCCCeEEEEeccchh
Confidence 368999999999999999999999999999999999999999999999999999999999999999999988764 367
Q ss_pred CCCCCchHHHHHHHHHHHHHHH--HHhhccc
Q psy15701 82 LEYGMPSTHAMIAVAIPMASIL--FTVDKYN 110 (112)
Q Consensus 82 ~~~SFPSgHt~~a~~~~~~l~~--~~~~~~~ 110 (112)
++||+||.|||||+++.+.+.+ ...++++
T Consensus 155 ~EYG~PStHt~natais~~~~~~ls~~d~~s 185 (407)
T KOG2822|consen 155 KEYGMPSTHTMNATAISFYFFLVLSTMDRES 185 (407)
T ss_pred hhhCCCcchhhhhhHHHHHHHHHHHHhchhh
Confidence 8999999999999999987433 3344443
No 6
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=99.76 E-value=1.4e-17 Score=112.91 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhhcchhHHHHHHHHHHHHhcchhhHHH----HHHHHHHHHHHHHHHHHhhcCCCCCCC-ccccccccCCC
Q psy15701 8 KFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRR----IITVWAVVMYIGQSLKDVIQWPRPICP-PAVRVQSKWSL 82 (112)
Q Consensus 8 ~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iK~~~~rpRP~~~-~~~~~~~~~~~ 82 (112)
...|.+|+.+|.+|+..+++.+.++++|+.++++... +...++++..++.++|..++||||+.. +.. ......+
T Consensus 11 ~~~~~~~~~~t~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~~-~~~~~~~ 89 (159)
T cd03391 11 GPVRPLVKLLELSGHGIPWLAGTISCLWISSSPAGQEVLVNLLLGLLLDIITVAILKALVRRRRPAYNSPDM-LDYVAVD 89 (159)
T ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcc-chhccCC
Confidence 4689999999999998776665555566544443322 334445566778899999999999943 211 1112357
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 83 EYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 83 ~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
++|||||||+.++++++++....++
T Consensus 90 ~~SFPSGHa~~a~a~a~~l~~~~~~ 114 (159)
T cd03391 90 KYSFPSGHASRAAFVARFLLNHLVL 114 (159)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999998887766543
No 7
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=99.73 E-value=4.1e-17 Score=108.74 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-cccccccCCCCC
Q psy15701 10 LYYFFYIGTYLGDEIFYSIYFPFWFWNVDYN----VGRRIITVWAVVMYIGQSLKDVIQWPRPICPP-AVRVQSKWSLEY 84 (112)
Q Consensus 10 ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~-~~~~~~~~~~~~ 84 (112)
+|.+|..+|+.+... ..++.+.+|+..++ ........++++.+++.++|..++||||+..+ ..... +.+.++
T Consensus 1 ld~~~~~~t~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~~~~r~RP~~~~~~~~~~-~~~~~~ 77 (144)
T cd03385 1 LDALAIFIAEYLIYI--LPLLLVVLWLWGGEKQRKVVLFATIAVAVALLINYIIGLLYFHPRPFVVGLGHNLL-PHAADS 77 (144)
T ss_pred CHHHHHHHHhhHHHH--HHHHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccc-cCCCCC
Confidence 588999999875432 22222334433222 22334556667888899999999999998432 11111 246899
Q ss_pred CCchHHHHHHHHHHHHHHH
Q psy15701 85 GMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 85 SFPSgHt~~a~~~~~~l~~ 103 (112)
||||||+++++++++.+..
T Consensus 78 SFPSgH~~~~~~~~~~l~~ 96 (144)
T cd03385 78 SFPSDHTTLFFSIAFSLLL 96 (144)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 9999999999988876543
No 8
>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.
Probab=99.73 E-value=7.9e-17 Score=111.66 Aligned_cols=104 Identities=20% Similarity=0.095 Sum_probs=69.4
Q ss_pred cccchHHHHHHHHHhhcchhHHHHHHHHH-HHHh-cc-------------hh---hHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15701 4 TVKNKFLYYFFYIGTYLGDEIFYSIYFPF-WFWN-VD-------------YN---VGRRIITVWAVVMYIGQSLKDVIQW 65 (112)
Q Consensus 4 ~~~~~~ld~~~~~it~~g~~~~~~~~~~~-~~~~-~~-------------~~---~~~~~~~~~~~~~~~~~~iK~~~~r 65 (112)
+.++|.+|.+|..+|++|++..+.+++.+ .++. .. ++ ....+..+++.+.+++..+|..++|
T Consensus 15 ~~~~~~l~~~~~~it~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~lK~~~~R 94 (186)
T cd03389 15 ALDGRILAGFFRTITDFGKSGWYLIPSLLLFLLFRFGDLRGLSAPSRARFPKAAWAGLFLFATVALSGILVNLLKFIIGR 94 (186)
T ss_pred HCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999999999997554443332 2222 11 11 1233444556677888999999999
Q ss_pred CCCCCCccc-----cccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 66 PRPICPPAV-----RVQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 66 pRP~~~~~~-----~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
|||...... ......+.++|||||||+.++++++.+.+..++
T Consensus 95 ~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~~~~~~l~~~~~~ 141 (186)
T cd03389 95 ARPKLLFDDGLYGFDPFHADYAFTSFPSGHSATAGAAAAALALLFPR 141 (186)
T ss_pred CCCChhhcCCcccccccccCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 999842100 000123678999999999999998887766543
No 9
>cd03393 PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.70 E-value=2.1e-17 Score=107.78 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=61.1
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc-ccccccCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q psy15701 30 FPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPA-VRVQSKWSLEYGMPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~-~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
+++++|+.++|.+..+...++++..++.++|..++||||+..+. ....+.+++++||||||++.++++++.+....+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~sFPSgHa~~~~~~~~~~~~~~~~~ 82 (125)
T cd03393 3 LSLIYWLVDKRLGRYLGLALCASGYLNAALKEVFKIPRPFTYDGIQAIYEESAGGYGFPSGHAQTSATFWGSLMLHVRKK 82 (125)
T ss_pred EEEEeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCcccchhccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34567877888888888888899999999999999999985421 11222357899999999999998877766655554
Q ss_pred c
Q psy15701 109 Y 109 (112)
Q Consensus 109 ~ 109 (112)
+
T Consensus 83 ~ 83 (125)
T cd03393 83 W 83 (125)
T ss_pred H
Confidence 3
No 10
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=99.68 E-value=7.3e-16 Score=108.18 Aligned_cols=96 Identities=10% Similarity=0.139 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHhhcchhHHHHHHHHHHHHhcc--h------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q psy15701 6 KNKFLYYFFYIGTYLGDEIFYSIYFPFWFWNVD--Y------NVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQ 77 (112)
Q Consensus 6 ~~~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~ 77 (112)
+++++|.+|..+++-+ .....++.+++|+.. + +....+..+++++.+++.++|..++||||+........
T Consensus 19 ~~~~l~~~~~~i~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~r~RP~~~~~~~~~ 96 (202)
T PRK11837 19 SAPWMISLAIFIAKDL--ILIVPLLAVVLWLWGPRDQLTAQRQLVIKIAIALAISLLVSWTIGHLFPHDRPFVEGIGYNF 96 (202)
T ss_pred CChHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 4468999999988732 222222233344322 1 12233445566777889999999999999853211111
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHH
Q psy15701 78 SKWSLEYGMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 78 ~~~~~~~SFPSgHt~~a~~~~~~l~~ 103 (112)
..++.++|||||||+.+++++..+.+
T Consensus 97 ~~~~~~~SFPSgHa~~~~~~a~~~l~ 122 (202)
T PRK11837 97 LHHAADDSFPSDHGTVIFTFALAFLF 122 (202)
T ss_pred ccCCCCCCCchHHHHHHHHHHHHHHH
Confidence 22378899999999999887664433
No 11
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=99.61 E-value=7.5e-15 Score=101.62 Aligned_cols=89 Identities=8% Similarity=-0.067 Sum_probs=65.5
Q ss_pred cccchHHHHHHHHHhhcchhHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCC
Q psy15701 4 TVKNKFLYYFFYIGTYLGDEIFYSIYFPFWFWNV-DYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSL 82 (112)
Q Consensus 4 ~~~~~~ld~~~~~it~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~ 82 (112)
.++.++++..+..+|.+|+.. ..+.. +++....++..++.+.+++.++|+.++||||..+.. ...++..
T Consensus 48 p~~~~~l~~~~r~it~lg~~~--------~~l~~~d~~g~~~l~~al~~~~ll~~~LK~~~~R~~~~~~r~--~~~p~~~ 117 (190)
T PRK09597 48 PLAFHFTEHYARFIPTILSVA--------IPLIQRDAIGLFQVANASIATTLLTHTTKRALNHVTINDQRL--GERPYGG 117 (190)
T ss_pred CCCcHHHHHHHHHHHHHHHHH--------HHHHhccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--ccCCCCC
Confidence 468899999999999999865 12333 334456677788889999999999999988863211 1112355
Q ss_pred CCCCchHHHHHHHHHHHHHH
Q psy15701 83 EYGMPSTHAMIAVAIPMASI 102 (112)
Q Consensus 83 ~~SFPSgHt~~a~~~~~~l~ 102 (112)
++|||||||+++++.+.++.
T Consensus 118 ~~SFPSGHt~~af~~a~~l~ 137 (190)
T PRK09597 118 NFNMPSGHSSMVGLAVAFLM 137 (190)
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 69999999999987665443
No 12
>cd03382 PAP2_dolichyldiphosphatase PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.
Probab=99.59 E-value=2.8e-14 Score=96.74 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q psy15701 42 GRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 42 ~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~ 103 (112)
.......++.+..++.++|+.++||||+.++.. +++++||||||++.++.++..+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~lK~~~~rpRP~~~~~~-----~~~~~SFPSgHa~~~~~~~~~~~l 100 (159)
T cd03382 44 AIYLFIGLLANEALNYVLKRIIKEPRPCSGAYF-----VRSGYGMPSSHSQFMGFFAVYLLL 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCcC-----CCCCCCCCchhHHHHHHHHHHHHH
Confidence 444555666778889999999999999854221 378999999999988766655543
No 13
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=99.58 E-value=1.2e-14 Score=104.37 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHhhcchhHH-HHHHHHHHH---Hhcc--hhhHHH----HHHHHHHHHHHHHHHHHhhcCCCCCC-----
Q psy15701 6 KNKFLYYFFYIGTYLGDEIF-YSIYFPFWF---WNVD--YNVGRR----IITVWAVVMYIGQSLKDVIQWPRPIC----- 70 (112)
Q Consensus 6 ~~~~ld~~~~~it~~g~~~~-~~~~~~~~~---~~~~--~~~~~~----~~~~~~~~~~~~~~iK~~~~rpRP~~----- 70 (112)
.++.....+..+|+.|+.+. .+..+.+.. |..+ +|.... ++..++++..+++++|+.++||||+.
T Consensus 33 ~~~~~~~~~~~lT~t~~~p~~~iT~~~l~~~~~~~~r~~~k~~l~l~~~l~~~i~~~~~~k~~iK~~~~epRP~v~~l~~ 112 (244)
T PRK10699 33 EQSWWLKGLFWVTETVTQPWGILTHVLLCGWFLWCLRFRLKAALVLFAILAAAILVGQGVKSWIKERVQEPRPFVVWLEK 112 (244)
T ss_pred CCchHHhhHhheecCCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH
Confidence 35666778888999876553 333333222 3222 222222 22334567788899999999999961
Q ss_pred ----Cc-------------ccc--ccc------------cCCCCCCCchHHHHHHHHHHHH
Q psy15701 71 ----PP-------------AVR--VQS------------KWSLEYGMPSTHAMIAVAIPMA 100 (112)
Q Consensus 71 ----~~-------------~~~--~~~------------~~~~~~SFPSgHt~~a~~~~~~ 100 (112)
++ .++ +.. .+++|||||||||+.+++++.+
T Consensus 113 ~~~~~~~~FY~l~~~~r~~~v~~~~~~~~~~~~w~~~hw~~~~gySFPSGHa~~a~~~~l~ 173 (244)
T PRK10699 113 THHIPVDEFYTLKRAERGELVKEQLAEQSNIPQWLRSHWQKETGFAFPSGHTMFAASWALL 173 (244)
T ss_pred hcCCCHHHHHccCHHHHHHHHHHHHhccccCCHHHHhccCCCCCCCCChHHHHHHHHHHHH
Confidence 10 010 000 3578999999999998765543
No 14
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=99.50 E-value=1.2e-13 Score=98.86 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-Cccc---------c---ccccCCCCCCCchHHHHHHHHHHHHHHH
Q psy15701 37 VDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPIC-PPAV---------R---VQSKWSLEYGMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~-~~~~---------~---~~~~~~~~~SFPSgHt~~a~~~~~~l~~ 103 (112)
.+++.+..++.+.+++..+|.++|.+++||||+. .... . ....+++||||||||+|.++++++.+..
T Consensus 12 ~~~~~g~~l~~~~~~~~~ln~vlK~ii~r~RP~~~~~~~~~~~~~~~p~~~~~~l~c~tgysfPSGHam~a~a~~~~l~~ 91 (235)
T cd03381 12 LSQSVGIKLLWVAVIGDWLNLVFKWILFGQRPYWWVHETDYYSNSSVPKIEQFPLTCETGPGSPSGHAMGTTAVLLVMVT 91 (235)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhcccccccccccccccccccccCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4556777777777777779999999999999984 1100 0 1113478999999999999988877654
No 15
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.49 E-value=1.5e-13 Score=87.23 Aligned_cols=60 Identities=17% Similarity=-0.038 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 40 NVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
+....++..++++..++..+|..++||||+... ++++||||||++.+++++.++.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~--------~~~~sfPSgHa~~a~~~~~~~~~~~~~ 62 (106)
T cd03394 3 EGLLILAEAAALTAAVTEGLKFAVGRARPDGSN--------NGYRSFPSGHTASAFAAATFLQYRYGW 62 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------CCCCccCcHHHHHHHHHHHHHHHHHcc
Confidence 445556677788889999999999999998431 678999999999999988876654433
No 16
>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family. In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.
Probab=99.40 E-value=1.5e-12 Score=83.36 Aligned_cols=51 Identities=31% Similarity=0.335 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 44 RIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 44 ~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
.....++++..++.++|+.++||||+. .|||||||+.+++++..+.+..++
T Consensus 12 ~~~~~~~~~~~i~~~lK~~~~r~RP~~-------------~sFPSgHt~~a~a~a~~l~~~~~~ 62 (109)
T cd03383 12 VTFVSLLIVIIVVVILKAYFGRGTPLE-------------GGMPSGHAAIAFSIATAISLITNN 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC-------------CCCChHHHHHHHHHHHHHHHHHhh
Confidence 344667788899999999999999961 489999999999999877665444
No 17
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=99.35 E-value=4e-12 Score=88.45 Aligned_cols=63 Identities=22% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCC----cccc-cc---------------ccCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy15701 46 ITVWAVVMYIGQSLKDVIQWPRPICP----PAVR-VQ---------------SKWSLEYGMPSTHAMIAVAIPMASILFT 105 (112)
Q Consensus 46 ~~~~~~~~~~~~~iK~~~~rpRP~~~----~~~~-~~---------------~~~~~~~SFPSgHt~~a~~~~~~l~~~~ 105 (112)
...++++..+++++|..++||||... +... .. ...++++|||||||+.+++.++++.+++
T Consensus 52 ~~~~~~~~~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SFPSGHas~a~~~~~~l~l~l 131 (193)
T cd03390 52 LLSVSLNGVITNVLKNYAGRPRPDFLARCFPDGGTPSDTLVGIDICCTGDPGVLKEGRKSFPSGHSSFAFAGLGFLSLYL 131 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHhCCCCCcccccccCCCeecCCCHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence 34456677889999999999999731 1110 00 0013458999999999998888877765
Q ss_pred hhc
Q psy15701 106 VDK 108 (112)
Q Consensus 106 ~~~ 108 (112)
.++
T Consensus 132 ~~~ 134 (193)
T cd03390 132 AGK 134 (193)
T ss_pred HHH
Confidence 443
No 18
>cd03396 PAP2_like_6 PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.35 E-value=1.2e-11 Score=86.35 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcc-------c----cccccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q psy15701 46 ITVWAVVMYIGQSLKDVIQWPRPICPPA-------V----RVQSKWSLEYGMPSTHAMIAVAIPMASILFTV 106 (112)
Q Consensus 46 ~~~~~~~~~~~~~iK~~~~rpRP~~~~~-------~----~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~ 106 (112)
+.++..+..++.++|..++||||..... . ......++++|||||||+.++++.....+..+
T Consensus 73 ~~~~~~~~~v~~~lK~~~~r~RP~~~~~~gg~~~~~~~~~~~~~~~~~~~SFPSGHas~af~~~~~~~~~~~ 144 (197)
T cd03396 73 ILVIGLGLLVVAILKSHWGRPRPWDLTEFGGDAPYTPLFSGPSNGCGKGCSFPSGHASAGFALLALYFLFRR 144 (197)
T ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHhCCCCCCCcccccCCCCCCCCCcCCchhHHHHHHHHHHHHHHHH
Confidence 4445567778899999999999984210 0 01123478999999999999987665444433
No 19
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=99.30 E-value=8.2e-12 Score=83.93 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCC----cccccc--------------------ccCCCCCCCchHHHHHHHHHHH
Q psy15701 44 RIITVWAVVMYIGQSLKDVIQWPRPICP----PAVRVQ--------------------SKWSLEYGMPSTHAMIAVAIPM 99 (112)
Q Consensus 44 ~~~~~~~~~~~~~~~iK~~~~rpRP~~~----~~~~~~--------------------~~~~~~~SFPSgHt~~a~~~~~ 99 (112)
.....+.++.+++.++|..++||||... |..... .-.+.++||||||++.+++.++
T Consensus 8 ~~~~~~~~~~l~~~~lK~~igrpRP~fl~~c~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SFPSGHs~~a~~~~~ 87 (150)
T cd03384 8 VFLFGLFATQLLTDLGKYVTGRLRPHFLDVCKPNYTDLTCSLDHQYIADCTCCTGDPDLIREARLSFPSGHASLSMYAAV 87 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCChHhhcCCCCCCcccccCccccccceeeCCCHHHHhcCccCCCcHhHHHHHHHHH
Confidence 3455667788899999999999999731 110000 0035689999999999998888
Q ss_pred HHHHHHhhcc
Q psy15701 100 ASILFTVDKY 109 (112)
Q Consensus 100 ~l~~~~~~~~ 109 (112)
++.+++.+++
T Consensus 88 ~l~l~l~~~~ 97 (150)
T cd03384 88 FLALYLQARL 97 (150)
T ss_pred HHHHHHHHHh
Confidence 8776655543
No 20
>smart00014 acidPPc Acid phosphatase homologues.
Probab=99.23 E-value=4.2e-11 Score=76.67 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCC------ccccccccCCCCCCCchHHHHHHHHHHHHHHHHHhhcc
Q psy15701 49 WAVVMYIGQSLKDVIQWPRPICP------PAVRVQSKWSLEYGMPSTHAMIAVAIPMASILFTVDKY 109 (112)
Q Consensus 49 ~~~~~~~~~~iK~~~~rpRP~~~------~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~~ 109 (112)
.+.+..++..+|..++||||+.. +.......++.++||||||++.++++++++.....+++
T Consensus 4 ~~~~~~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~~~~~~~ 70 (116)
T smart00014 4 AVVSLLFTGVIKNYFGRPRPFFLDIGDACCTPNFLLTLEAGYSFPSGHTAFAFAFALFLLLYLPARA 70 (116)
T ss_pred HHHHHHHHHHHHHHhCCCCcCcccccccccCcchhhhcCCCCCcChHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999731 11111223478999999999999999988877665543
No 21
>PLN02715 lipid phosphate phosphatase
Probab=99.21 E-value=1.2e-10 Score=86.90 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCC----ccc-----cc----c-----ccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q psy15701 45 IITVWAVVMYIGQSLKDVIQWPRPICP----PAV-----RV----Q-----SKWSLEYGMPSTHAMIAVAIPMASILFTV 106 (112)
Q Consensus 45 ~~~~~~~~~~~~~~iK~~~~rpRP~~~----~~~-----~~----~-----~~~~~~~SFPSgHt~~a~~~~~~l~~~~~ 106 (112)
+++.++++.+++.++|+.++||||... |.. .+ + ...++..||||||++.+++..+++.+++.
T Consensus 128 l~~al~~t~lit~~lK~~vGRpRPdfl~rC~Pd~~~~~~~l~~~iCt~~~~~l~dg~~SFPSGHSS~sfagl~~Lsl~L~ 207 (327)
T PLN02715 128 LLFAVLITGVITDSIKVATGRPRPNFYWRCFPDGKELYDALGGVICHGKAAEVKEGHKSFPSGHTSWSFAGLTFLSLYLS 207 (327)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhhcCccccccccccccccccCccccccccCCCCCchhHHHHHHHHHHHHHHHH
Confidence 344566778889999999999999821 100 00 0 01267899999999999999998877665
Q ss_pred hcc
Q psy15701 107 DKY 109 (112)
Q Consensus 107 ~~~ 109 (112)
.+.
T Consensus 208 ~kl 210 (327)
T PLN02715 208 GKI 210 (327)
T ss_pred Hhh
Confidence 543
No 22
>PLN02250 lipid phosphate phosphatase
Probab=99.15 E-value=4.4e-10 Score=83.55 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCC----ccc-----c-----cc-----ccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q psy15701 46 ITVWAVVMYIGQSLKDVIQWPRPICP----PAV-----R-----VQ-----SKWSLEYGMPSTHAMIAVAIPMASILFTV 106 (112)
Q Consensus 46 ~~~~~~~~~~~~~iK~~~~rpRP~~~----~~~-----~-----~~-----~~~~~~~SFPSgHt~~a~~~~~~l~~~~~ 106 (112)
.+.++++.+++.++|+.++||||... |.. . .. ...++..||||||++.+++..+++.+++.
T Consensus 104 l~sv~~t~lit~~lK~~vGRpRPdfl~rC~P~~~~~~~~~~~~~~Ctg~~~~l~dg~~SFPSGHSS~afa~~~fLslyL~ 183 (314)
T PLN02250 104 LFSVLITGVITDAIKDAVGRPRPDFFWRCFPDGKGVFHPVTTDVLCTGAKSVIKEGHKSFPSGHTSWSFAGLGFLSLYLS 183 (314)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCCChhhhcCccccccccccccceeecCCcccccccCCCCCchhHHHHHHHHHHHHHHHH
Confidence 44556677888999999999999731 100 0 00 01256799999999999999988877664
Q ss_pred hc
Q psy15701 107 DK 108 (112)
Q Consensus 107 ~~ 108 (112)
.|
T Consensus 184 ~k 185 (314)
T PLN02250 184 GK 185 (314)
T ss_pred Hh
Confidence 43
No 23
>PLN02731 Putative lipid phosphate phosphatase
Probab=99.10 E-value=3.6e-10 Score=84.46 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCC----ccc-----cc----c-----ccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 46 ITVWAVVMYIGQSLKDVIQWPRPICP----PAV-----RV----Q-----SKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 46 ~~~~~~~~~~~~~iK~~~~rpRP~~~----~~~-----~~----~-----~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
...++++.+++.++|+.+.||||... |.. .+ . ...+...||||||++.+++..+++.+++..
T Consensus 123 l~s~~~t~liT~ilK~~vGRpRPdfl~rC~P~~~~~~~~~~~~iCt~~~~~l~dg~~SFPSGHSS~sfagl~fLslyL~~ 202 (333)
T PLN02731 123 LYSVLVTAVLTDAIKNAVGRPRPDFFWRCFPDGKALYDSLGDVICHGDKSVIREGHKSFPSGHTSWSFSGLGFLSLYLSG 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchhhcCccccccccccccceecCchhcccccCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 34556777889999999999999731 100 00 0 012557899999999999999988877654
Q ss_pred cc
Q psy15701 108 KY 109 (112)
Q Consensus 108 ~~ 109 (112)
++
T Consensus 203 kl 204 (333)
T PLN02731 203 KI 204 (333)
T ss_pred hh
Confidence 43
No 24
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=99.04 E-value=1.2e-09 Score=69.13 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccc----ccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 49 WAVVMYIGQSLKDVIQWPRPICPPAVR----VQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 49 ~~~~~~~~~~iK~~~~rpRP~~~~~~~----~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
...+..++..+|..+.||||....... .....+.++||||||++.+++++..+....++
T Consensus 12 ~~~~~~~~~~~k~~~~~~rP~~~~~~~~~~~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~~ 74 (122)
T cd01610 12 LLAGLLLTGVLKYLFGRPRPYFLLRCGPDGDPLLLTEGGYSFPSGHAAFAFALALFLALLLPR 74 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCCChHHhcCCccchhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334445789999999999999431100 01234789999999999999999988777654
No 25
>cd03380 PAP2_like_1 PAP2_like_1 proteins, a sub-family of PAP2, containing bacterial acid phosphatase, vanadium chloroperoxidases and vanadium bromoperoxidases.
Probab=99.00 E-value=1.9e-09 Score=75.80 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCc---ccccc---ccCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q psy15701 49 WAVVMYIGQSLKDVIQWPRPICPP---AVRVQ---SKWSLEYGMPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 49 ~~~~~~~~~~iK~~~~rpRP~~~~---~~~~~---~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
+.-+.+++..+|..++|+||+... ..... ......+||||||++.+++++.++..++.++
T Consensus 102 ~~da~~~~~~~K~~~~r~RP~~~~~~~~~~~~~~~~~~~~~~SfPSGHa~~a~a~a~~l~~~~~~~ 167 (209)
T cd03380 102 LTDAGIATWDAKYHYNRPRPFVAIRLQWLPICTPEEGTPKHPSYPSGHATFGGAAALVLAELFPER 167 (209)
T ss_pred HHHHHHHHHHHHHHHCCCCchhhhccCCCcccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 334556689999999999999431 11111 1347799999999999999999888776654
No 26
>KOG3146|consensus
Probab=98.99 E-value=6.5e-09 Score=72.79 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=52.3
Q ss_pred HHhcchhh--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHHHHhhcc
Q psy15701 34 FWNVDYNV--GRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASILFTVDKY 109 (112)
Q Consensus 34 ~~~~~~~~--~~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~~ 109 (112)
-++.-+|+ +.+.++..+....+|..+|+.++.|||+.-|... -.+||+.||.|++....+..+..+...+.+
T Consensus 47 S~~l~rrEl~a~~~~~G~v~Ne~in~viK~il~qpRP~~~~~~t----~~s~yGMPSSHSQfM~Ffs~y~~l~~y~~~ 120 (228)
T KOG3146|consen 47 SVFLFRRELAAIWFVIGQVSNEFINVVIKNILKQPRPVSFPDTT----LRSGYGMPSSHSQFMGFFSVYSSLSVYKWL 120 (228)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc----cccCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34444454 4566777888999999999999999998533222 167999999999988777776665554443
No 27
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=98.99 E-value=2.6e-09 Score=76.49 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCCCCC-ccccccc----cCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q psy15701 54 YIGQSLKDVIQWPRPICP-PAVRVQS----KWSLEYGMPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 54 ~~~~~iK~~~~rpRP~~~-~~~~~~~----~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
..+..+|..++|+||+.. +...... ....++||||||++.+++++.++..++.++
T Consensus 115 ~~~~~~K~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SfPSGHa~~a~a~a~~La~~~p~~ 174 (232)
T cd03397 115 SATYPAKKYYNRPRPFVLNDEPICTPPDESGLAKDGSYPSGHTAAGYAWALILAELVPER 174 (232)
T ss_pred HHHHHHHhhhCCCCCCccCCCCcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999942 1111111 136789999999999999888887766554
No 28
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=98.94 E-value=2e-10 Score=74.04 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcc-cccc----ccCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q psy15701 44 RIITVWAVVMYIGQSLKDVIQWPRPICPPA-VRVQ----SKWSLEYGMPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 44 ~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~-~~~~----~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
.+...++.+..++..+|..++||||..... .... .....++||||||++.++++++.+....+++
T Consensus 4 ~~~~~~~~~~~~~~~lk~~~~~~rP~~~~~~~~~~~~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~~~ 73 (129)
T PF01569_consen 4 ALLFALILAAILNNVLKWIFGRPRPFFYIPNYGLYPQHWPFQSPFNSFPSGHAAIAAAFAFFLAYYLGSR 73 (129)
T ss_dssp HHHHHHHHHHHHCHHHHHHHTB--HHHHHHHHHCHHTCHHCHTTS-SSS-HHHHHHHHHHHHHHHHCCCC
T ss_pred ccccchhhhHHHHHHHHHhhCCCCcCcccccCcccccCccccCCCCcCcchhhhhHHHHHhhhhhhhhcc
Confidence 455666778888899999999999984211 1000 1112367999999999999998877766544
No 29
>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]
Probab=98.66 E-value=4.4e-07 Score=62.18 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHH--hhcCCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 44 RIITVWAVVMYIGQSLKD--VIQWPRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 44 ~~~~~~~~~~~~~~~iK~--~~~rpRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
............+..+|. .+.+|||..... . ...+.++|||||||+.+++.++.+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~sfPSgHt~~~~~~~~~l~~~~~~ 157 (232)
T COG0671 95 KLLVGLPRPLIVLSALKTWHIFARPRPGLLVA-L--VLGASGYSFPSGHAAGAAAAALLLALLLPL 157 (232)
T ss_pred HHHHHhHHHHHHHHHHhccccccCCCCcchhc-c--ccCcccCCCCChhHHHHHHHHHHHHHHHHH
Confidence 334444556677788887 899999974311 1 122789999999999999877777665443
No 30
>KOG4268|consensus
Probab=98.53 E-value=1.5e-07 Score=63.42 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC-ccccccccCCCCCCCchHHHHHHHHHH
Q psy15701 47 TVWAVVMYIGQSLKDVIQWPRPICP-PAVRVQSKWSLEYGMPSTHAMIAVAIP 98 (112)
Q Consensus 47 ~~~~~~~~~~~~iK~~~~rpRP~~~-~~~~~~~~~~~~~SFPSgHt~~a~~~~ 98 (112)
..+....+...++|.+++|.||+.. |... .....+-|||||||+.-++.++
T Consensus 71 LgLlfDli~vaivk~~f~R~rP~~t~pS~l-~~~t~DiYsFPsGHaSRaamv~ 122 (189)
T KOG4268|consen 71 LGLLFDLITVAIVKKLFKRRRPYETSPSLL-DYLTMDIYSFPSGHASRAAMVS 122 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHhhhhhcCCCcchHHHHHHH
Confidence 3444566677899999999999943 3111 1123678999999999766553
No 31
>cd03398 PAP2_haloperoxidase PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.
Probab=98.50 E-value=2.7e-07 Score=65.94 Aligned_cols=57 Identities=18% Similarity=-0.045 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-c-cc-------------cccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 51 VVMYIGQSLKDVIQWPRPICP-P-AV-------------RVQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 51 ~~~~~~~~iK~~~~rpRP~~~-~-~~-------------~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
-+.++++..|..++|+||+.. . .. ..........||||||++.+++++.++..++.+
T Consensus 97 da~ia~~~~K~~~~r~RP~~~~~~~~~~~~~~~~~~~~w~p~~~~p~~psyPSGHa~~a~a~a~vL~~~~~~ 168 (232)
T cd03398 97 DAGIAAWDAKYHYRRWRPVTAIRLADTDGNPATEADPYWLPLAGTPPHPSYPSGHATFAGAAATVLKALFGS 168 (232)
T ss_pred HHHHHHHHHHhhcCccCHHHHHHhhcccCCCCCCCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHhCC
Confidence 344668899999999999841 1 00 000123578999999999999999988766544
No 32
>KOG3030|consensus
Probab=98.43 E-value=1e-06 Score=65.77 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC-----Ccccc--c--------cc-c---------CCCCCCCchHHHHHHHHHHHH
Q psy15701 46 ITVWAVVMYIGQSLKDVIQWPRPIC-----PPAVR--V--------QS-K---------WSLEYGMPSTHAMIAVAIPMA 100 (112)
Q Consensus 46 ~~~~~~~~~~~~~iK~~~~rpRP~~-----~~~~~--~--------~~-~---------~~~~~SFPSgHt~~a~~~~~~ 100 (112)
.+.++++.+++.++|..+.|+||.- |.... . .+ . .+..-||||||+..++.-.++
T Consensus 116 lfgl~~t~~~t~~~K~~vGRlRP~Fl~vC~P~~~~~~~~~~~~~yi~~~~Ctg~~~~~i~e~rkSFPSGHsS~s~y~~~f 195 (317)
T KOG3030|consen 116 LFGLAATQLFTDIIKLAVGRLRPHFLDVCQPDGTDGSTCSDSNLYIEDFICTGPDPDVVREGRKSFPSGHSSFSFYAMGF 195 (317)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeccccCCccCCCCCcccccccccceeCCCCHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 3455677888899999999999982 21100 0 00 0 123589999999999988888
Q ss_pred HHHHHhhccc
Q psy15701 101 SILFTVDKYN 110 (112)
Q Consensus 101 l~~~~~~~~~ 110 (112)
+.++...|..
T Consensus 196 lalyl~~~~~ 205 (317)
T KOG3030|consen 196 LALYLQARLF 205 (317)
T ss_pred HHHHHHHHHh
Confidence 8877766654
No 33
>cd03386 PAP2_Aur1_like PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
Probab=98.30 E-value=1.3e-05 Score=55.44 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCcc----cc-----------ccccCCCCCCCchHHHHHHHHHHHH
Q psy15701 38 DYNVGRRIITVWAVVMYIGQSLKDVIQWPRPI--CPPA----VR-----------VQSKWSLEYGMPSTHAMIAVAIPMA 100 (112)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~--~~~~----~~-----------~~~~~~~~~SFPSgHt~~a~~~~~~ 100 (112)
+++...+...++.++..++.++-..+.-.||. .+.. .. .........||||+|++.++.++..
T Consensus 54 ~~~~~~~~~~~~~l~~~i~~~iy~l~P~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPS~H~~~a~~~~~~ 133 (186)
T cd03386 54 PPGTLRRFRRALGLANLLGLLIYLLFPTAPPRYEPPYGLILLVLLMYGSAGYTSGFGGFDNPFNAFPSLHVAWAVLAALF 133 (186)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhcccCCCCCccCccCCcchhhhcCCCccccccccCCCCCcceeCcHHHHHHHHHHHH
Confidence 44445566666666666666655555544444 2210 00 0112246799999999999988876
Q ss_pred HHHHHh
Q psy15701 101 SILFTV 106 (112)
Q Consensus 101 l~~~~~ 106 (112)
+....+
T Consensus 134 ~~~~~~ 139 (186)
T cd03386 134 LWRHRR 139 (186)
T ss_pred HHHHHH
Confidence 665533
No 34
>PF14378 PAP2_3: PAP2 superfamily
Probab=96.20 E-value=0.15 Score=35.10 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCchHHHHHHHHHHHHHHH
Q psy15701 85 GMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 85 SFPSgHt~~a~~~~~~l~~ 103 (112)
.|||.|+..+...+..+.-
T Consensus 127 afPSlH~a~a~l~~~~~~~ 145 (191)
T PF14378_consen 127 AFPSLHVAWAVLCALALWR 145 (191)
T ss_pred ccCchHHHHHHHHHHHHHH
Confidence 6999999998877665544
No 35
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=94.47 E-value=0.11 Score=34.70 Aligned_cols=50 Identities=28% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhcC--CCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q psy15701 48 VWAVVMYIGQSLKDVIQW--PRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 48 ~~~~~~~~~~~iK~~~~r--pRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~ 103 (112)
+-+++..+.+++|..++. .|.... ..+ -.+=++||+|++...++++.+.+
T Consensus 9 ~a~~a~~~AQ~iK~~~~~~~~r~~d~--~~~----~~sGGMPSSHSA~V~aLat~ig~ 60 (141)
T PF02681_consen 9 AALIAWFIAQFIKVFINYLKERKWDW--RRF----FSSGGMPSSHSATVSALATAIGL 60 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccH--HHH----hhcCCCCchHHHHHHHHHHHHHH
Confidence 334555566666666542 233211 111 34678999999988888776544
No 36
>COG3907 PAP2 (acid phosphatase) superfamily protein [General function prediction only]
Probab=90.92 E-value=1.7 Score=30.90 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCC-------ccccc-c--c-cCCCCCCCchHHHHHHHHHHHH
Q psy15701 45 IITVWAVVMYIGQSLKDVIQWPRPICP-------PAVRV-Q--S-KWSLEYGMPSTHAMIAVAIPMA 100 (112)
Q Consensus 45 ~~~~~~~~~~~~~~iK~~~~rpRP~~~-------~~~~~-~--~-~~~~~~SFPSgHt~~a~~~~~~ 100 (112)
+..+++++..+..++|..-.-.=|-.. +...+ . + ....|+-||-||+.+.++....
T Consensus 112 vf~~~~L~~s~i~~lKalta~~CPWdLv~yGG~~~~~~L~~~rpp~~~pGhCfPgGHASsGfa~~aL 178 (249)
T COG3907 112 VFVTLVLSTSLISLLKALTAMDCPWDLVRYGGGFPFIGLFESRPPLKAPGHCFPGGHASSGFAWVAL 178 (249)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCHHHHHhCCCCcceEeecCCCCCCCCCCcCCCCCccccHHHHHH
Confidence 344566777778899998877766521 11111 1 1 1245888999999988865543
No 37
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=1.3 Score=29.68 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcC--CCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q psy15701 50 AVVMYIGQSLKDVIQW--PRPICPPAVRVQSKWSLEYGMPSTHAMIAVAIPMASIL 103 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~r--pRP~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~ 103 (112)
+.+....+.+|..++- .|-.... +. -..-+.||+|++...++++.+.+
T Consensus 17 l~a~~~AQvIKv~I~~~~~rk~~~~---~~---~sTGGMPSsHSA~VtALat~ial 66 (153)
T COG1963 17 LVAILLAQVIKVLIELIRTRKLNVT---LL---FSTGGMPSSHSALVTALATSIAL 66 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhccccce---ee---eecCCCCchHHHHHHHHHHHHHH
Confidence 3455555667766632 2222111 11 33568999999988888876554
No 38
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=79.50 E-value=1.9 Score=25.43 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc
Q psy15701 86 MPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 86 FPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
+-||||+..+....+..-+.+++
T Consensus 6 iFSGHt~~~~l~~l~~~~y~~~~ 28 (74)
T PF14360_consen 6 IFSGHTAFLTLCALFWWEYSPRR 28 (74)
T ss_pred EEchhHHHHHHHHHHHHHHcccc
Confidence 46999999988777666665554
No 39
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=52.58 E-value=24 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15701 40 NVGRRIITVWAVVMYIGQSLKDVIQWPRPI 69 (112)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~iK~~~~rpRP~ 69 (112)
+.-+.+...++++.+.....|..+.+||=-
T Consensus 14 ~l~~~l~~a~~lsl~~~~~~k~~~~~pRK~ 43 (70)
T cd00927 14 RIKRHLIVAFVLSLGAAAAYKFLVNEPRKK 43 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344567777788888888999999888853
No 40
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=41.88 E-value=1.5e+02 Score=22.36 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=44.1
Q ss_pred cccchHHHHHHHHHhhcchhHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCC
Q psy15701 4 TVKNKFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNVG-RRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSL 82 (112)
Q Consensus 4 ~~~~~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~ 82 (112)
..|+++.|....+.=.+....-....+...+|..++.++ .+-...+.....+-.++=-.++--||-.- .. ..-
T Consensus 8 ~~q~~vW~~~IA~yLfL~gIaa~a~~la~l~~r~g~~~~~~r~~svlg~la~iigLl~li~dL~rPw~f--~~----~mf 81 (305)
T COG3301 8 HFQSLVWDWPIAIYLFLLGIAAMAVVLAVLLKRFGKLKALLRTGSVLGFLAVILGLLFLIFDLTRPWTF--WK----LMF 81 (305)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcChHHH--HH----HHh
Confidence 356777776554443333222222223334444433333 22222222222222444456777888421 11 133
Q ss_pred CCCCc--hHHHHHHHHHHHHH
Q psy15701 83 EYGMP--STHAMIAVAIPMAS 101 (112)
Q Consensus 83 ~~SFP--SgHt~~a~~~~~~l 101 (112)
+|||- |.=++..+.+..++
T Consensus 82 ~~~~~~sS~ms~Gvml~~~~m 102 (305)
T COG3301 82 NYSFNASSWMSMGVMLFQLYM 102 (305)
T ss_pred chhcCchHHHHHHHHHHHHHH
Confidence 57777 88888887666554
No 41
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=39.39 E-value=27 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15701 41 VGRRIITVWAVVMYIGQSLKDVIQWPR 67 (112)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~iK~~~~rpR 67 (112)
.-+.++.+++++.++....|..+..||
T Consensus 17 l~~~i~~a~~ls~~~~~~~kf~v~~pR 43 (73)
T PF02937_consen 17 LKRHIVVAFVLSLGVAAAYKFGVAEPR 43 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334556666666666667777766655
No 42
>COG0597 LspA Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=39.10 E-value=1.3e+02 Score=20.63 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccCCCCCCCchHHHH
Q psy15701 50 AVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLEYGMPSTHAM 92 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP~~~~~~~~~~~~~~~~SFPSgHt~ 92 (112)
..+.+++..+.|.++|-..- .++.....+-.++.||.=--+
T Consensus 100 ~~~lIigGAlGN~iDR~~~g--~VvDfi~~~~~~~~fpiFNlA 140 (167)
T COG0597 100 ALALIIGGALGNLIDRLFRG--FVVDFIDFHYGNWHFPIFNLA 140 (167)
T ss_pred HHHHHHHHHHHHHHHHhhhc--ccceEEEEecCccccceeehh
Confidence 34444444455555554443 122222223456668864444
No 43
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=38.63 E-value=1.4e+02 Score=21.09 Aligned_cols=64 Identities=13% Similarity=-0.108 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhhcc----hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCC
Q psy15701 8 KFLYYFFYIGTYLG----DEIFYSIYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWP-RPICP 71 (112)
Q Consensus 8 ~~ld~~~~~it~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iK~~~~rp-RP~~~ 71 (112)
+.++.++.--++.| ...+++....+...+..+......+..+..+..+..++...+.|. |+..+
T Consensus 78 ~~~~~~~r~~e~~~~~~g~~~~~~~~~i~~~~lf~~~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~ 146 (216)
T COG0170 78 ELLSLIEREREKNGPGLGGIIYFIGGGLLASLLFPIEVAIAGILVLALGDGLASIIGKRYGRHKRILGN 146 (216)
T ss_pred HHHHHHhhHHHhcCCCcCcHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhHHHHHhCcccCccccccCC
Confidence 34555555555555 334444444444444555444545566778888889999999886 66643
No 44
>PRK14786 lipoprotein signal peptidase; Provisional
Probab=33.33 E-value=72 Score=21.41 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
+++.+++..+-|.++|-|-
T Consensus 89 al~lI~gGalGNliDRi~~ 107 (154)
T PRK14786 89 SLAIIIGGALGNLIDRVRL 107 (154)
T ss_pred HHHHHHHHHHHhHHHHhhc
Confidence 4444555556666666554
No 45
>KOG3058|consensus
Probab=32.91 E-value=23 Score=27.18 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhccc
Q psy15701 86 MPSTHAMIAVAIPMASILFTVDKYN 110 (112)
Q Consensus 86 FPSgHt~~a~~~~~~l~~~~~~~~~ 110 (112)
--||||...+..+.++--+..+++.
T Consensus 211 mfSGHTlvl~~~~l~~~eY~pr~~~ 235 (351)
T KOG3058|consen 211 MFSGHTLVLTLTALFITEYSPRRFI 235 (351)
T ss_pred eeecchHHHHHHHHHHHHhcccchh
Confidence 3599999999888877766655543
No 46
>PHA02101 hypothetical protein
Probab=32.62 E-value=25 Score=21.45 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=10.4
Q ss_pred HHHhhcCCCCCC
Q psy15701 59 LKDVIQWPRPIC 70 (112)
Q Consensus 59 iK~~~~rpRP~~ 70 (112)
.|.+++||||..
T Consensus 6 ak~~inrp~~~f 17 (101)
T PHA02101 6 AKCIVNRPRPVF 17 (101)
T ss_pred hHHHhcCCCccc
Confidence 589999999973
No 47
>PRK14769 lipoprotein signal peptidase; Provisional
Probab=32.37 E-value=79 Score=21.32 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
.++.+++..+-|.++|-|-
T Consensus 92 al~lI~gGalGNliDR~~~ 110 (156)
T PRK14769 92 AGGAVIGGALANVVDRARD 110 (156)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3444555555666666554
No 48
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=31.17 E-value=83 Score=17.45 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.5
Q ss_pred CCCchHHHHHHHHHH
Q psy15701 84 YGMPSTHAMIAVAIP 98 (112)
Q Consensus 84 ~SFPSgHt~~a~~~~ 98 (112)
-++|-+|++.+|-+.
T Consensus 22 gtlpashaqygfrll 36 (60)
T PF08196_consen 22 GTLPASHAQYGFRLL 36 (60)
T ss_pred CccchHHHHHHHHHH
Confidence 478999999887443
No 49
>PRK14773 lipoprotein signal peptidase; Provisional
Probab=30.41 E-value=1.1e+02 Score=21.51 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=8.8
Q ss_pred CCCchHHHHHHHHHHHH
Q psy15701 84 YGMPSTHAMIAVAIPMA 100 (112)
Q Consensus 84 ~SFPSgHt~~a~~~~~~ 100 (112)
+.||.=-.+=+.+.++.
T Consensus 160 ~~~pvFNiAD~~I~iGv 176 (192)
T PRK14773 160 IRWPTFNVADSLIVVGV 176 (192)
T ss_pred ccCCEEEHHHHHHHHHH
Confidence 56776555534444443
No 50
>PRK14787 lipoprotein signal peptidase; Provisional
Probab=29.79 E-value=79 Score=21.28 Aligned_cols=18 Identities=17% Similarity=0.304 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhcCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPR 67 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpR 67 (112)
.++.+++..+-|.++|-|
T Consensus 90 ~l~li~gGalGNliDR~~ 107 (159)
T PRK14787 90 AFGLILGGGIGNLIDRIT 107 (159)
T ss_pred HHHHHHHHHHHhHHHHhh
Confidence 334444445555555544
No 51
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=28.89 E-value=1.8e+02 Score=19.35 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCCCCccccccccCCCCCCCchHHHH
Q psy15701 47 TVWAVVMYIGQSLKDVIQW--PRPICPPAVRVQSKWSLEYGMPSTHAM 92 (112)
Q Consensus 47 ~~~~~~~~~~~~iK~~~~r--pRP~~~~~~~~~~~~~~~~SFPSgHt~ 92 (112)
....++..+...+...-+| +||-..+.-++ .+.+..++|-|-|+-
T Consensus 43 ls~~l~~mig~yl~~~~rr~~~rPED~~daEI-~dgAGe~GfFsP~Sw 89 (137)
T PF12270_consen 43 LSGGLALMIGFYLRFTARRIGPRPEDREDAEI-ADGAGELGFFSPHSW 89 (137)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcccccccc-ccCCCCcCcCCCccH
Confidence 3334444554444444444 77864332222 245788999999875
No 52
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=26.87 E-value=2e+02 Score=20.88 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHHHhcch---h--hHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15701 20 LGDEIFYSIYFPFWFWNVDY---N--VGRRIITVWAVVMYIGQSLKDVIQWPRPIC 70 (112)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~iK~~~~rpRP~~ 70 (112)
+||..+.-+++.....+... + .........+++...+..+-..++++.|--
T Consensus 176 LGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~~~ay~~GL~~t~~~l~~~~~aqPAL 231 (249)
T smart00730 176 LGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGIGLILTLVLLALFKKAQPAL 231 (249)
T ss_pred CCCeeeHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCccH
Confidence 46766655555555544421 1 122234445556666667778888888863
No 53
>PRK14797 lipoprotein signal peptidase; Provisional
Probab=26.87 E-value=1e+02 Score=20.57 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
..+.+++..+-|.++|-|-
T Consensus 89 ~l~lIlgGaiGNliDR~~~ 107 (150)
T PRK14797 89 GLTLIIAGGIGNFIDRLRL 107 (150)
T ss_pred HHHHHHHHHHhhHHHHhhC
Confidence 3444455555566666554
No 54
>PRK14781 lipoprotein signal peptidase; Provisional
Probab=26.43 E-value=1.1e+02 Score=20.42 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhcCCC
Q psy15701 51 VVMYIGQSLKDVIQWPR 67 (112)
Q Consensus 51 ~~~~~~~~iK~~~~rpR 67 (112)
++.+++..+-|.++|-|
T Consensus 92 l~lI~gGAlGNliDRi~ 108 (153)
T PRK14781 92 AALLLGGAVGNFIDRLD 108 (153)
T ss_pred HHHHHHHHHhhHHHHHh
Confidence 34444445555555544
No 55
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=26.28 E-value=1.2e+02 Score=21.34 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy15701 45 IITVWAVVMYIGQSLKDVI 63 (112)
Q Consensus 45 ~~~~~~~~~~~~~~iK~~~ 63 (112)
+...++++..+++++-.+.
T Consensus 92 ial~LIlGGAiGNlIDRi~ 110 (200)
T PRK14788 92 ICISLILAGAIGNIIDSVF 110 (200)
T ss_pred HHHHHHHHHHhhhhHHHHh
Confidence 3444555555555554443
No 56
>PRK14793 lipoprotein signal peptidase; Provisional
Probab=26.12 E-value=1e+02 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
.++.+++..+-|.++|-|-
T Consensus 88 ~l~lI~gGalGNliDR~~~ 106 (150)
T PRK14793 88 TLGLIGGGALGNLYDRLRI 106 (150)
T ss_pred HHHHHHHHHHhhHHHHHhc
Confidence 3444444555555666443
No 57
>PRK14790 lipoprotein signal peptidase; Provisional
Probab=25.19 E-value=1.2e+02 Score=20.78 Aligned_cols=19 Identities=32% Similarity=0.421 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
.++.+++..+-|.++|-|-
T Consensus 101 al~lIlgGAlGNliDRl~~ 119 (169)
T PRK14790 101 AMGLILGGALGNVIDRIRL 119 (169)
T ss_pred HHHHHHHHHHHhHHHHHhc
Confidence 4444555555666666554
No 58
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=25.02 E-value=46 Score=20.37 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHHH
Q psy15701 83 EYGMPSTHAMIAVAIPM 99 (112)
Q Consensus 83 ~~SFPSgHt~~a~~~~~ 99 (112)
-+|=|+||=.++++++.
T Consensus 77 F~GiP~GhEf~Slilai 93 (94)
T cd02974 77 FAGIPMGHEFTSLVLAL 93 (94)
T ss_pred EEecCCchhHHHHHHHh
Confidence 47899999999998764
No 59
>PRK14791 lipoprotein signal peptidase; Provisional
Probab=24.86 E-value=1.4e+02 Score=19.74 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhcCCCC
Q psy15701 51 VVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 51 ~~~~~~~~iK~~~~rpRP 68 (112)
++.+++..+-|.++|-|-
T Consensus 88 l~lilgGalGNliDRl~~ 105 (146)
T PRK14791 88 LSLIISGAIGNLIDRIRY 105 (146)
T ss_pred HHHHHHhHhhhHHHHhhc
Confidence 334444444555555443
No 60
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=24.69 E-value=2.3e+02 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
+++.++++.+-|+++|-||
T Consensus 139 aLaLILGGALGNLIDRl~~ 157 (263)
T PRK14780 139 PLLFLLFGGLGNIIDRSIP 157 (263)
T ss_pred HHHHHHHHHHhhHHHhhhh
Confidence 3444555555566666553
No 61
>PRK14792 lipoprotein signal peptidase; Provisional
Probab=23.96 E-value=1.3e+02 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy15701 50 AVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 50 ~~~~~~~~~iK~~~~rpRP 68 (112)
.++.+++..+-|.++|-|-
T Consensus 96 al~lI~gGalGNliDRl~~ 114 (159)
T PRK14792 96 ALAFLLGGTLGNGIDRWRL 114 (159)
T ss_pred HHHHHHHHHHhhHHHHHhc
Confidence 3444444555555555544
No 62
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=22.28 E-value=1.1e+02 Score=14.44 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q psy15701 88 STHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 88 SgHt~~a~~~~~~l~~~~~~~ 108 (112)
||-|..-..+....+..+|||
T Consensus 4 sGST~~Ll~~~l~~l~~~rRr 24 (26)
T TIGR03778 4 SGSTLALLGLGLLGLLGLRRR 24 (26)
T ss_pred chhHHHHHHHHHHHHHHHhhc
Confidence 344443333333344444554
No 63
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.16 E-value=1.5e+02 Score=15.61 Aligned_cols=15 Identities=13% Similarity=0.696 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhcc
Q psy15701 24 IFYSIYFPFWFWNVD 38 (112)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (112)
.+.++++.+++|.++
T Consensus 17 ~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344444445556554
No 64
>PRK14795 lipoprotein signal peptidase; Provisional
Probab=20.83 E-value=2.8e+02 Score=18.67 Aligned_cols=11 Identities=0% Similarity=0.006 Sum_probs=6.1
Q ss_pred CCCCCchHHHH
Q psy15701 82 LEYGMPSTHAM 92 (112)
Q Consensus 82 ~~~SFPSgHt~ 92 (112)
.++.||---.+
T Consensus 124 ~~~~~pvFNvA 134 (158)
T PRK14795 124 PTWSFAVFNLA 134 (158)
T ss_pred CCCCCceeeHH
Confidence 35667754444
No 65
>PRK14782 lipoprotein signal peptidase; Provisional
Probab=20.60 E-value=2.1e+02 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q psy15701 49 WAVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 49 ~~~~~~~~~~iK~~~~rpRP 68 (112)
+.++.+++..+-|+++|-|-
T Consensus 93 ~~l~lI~gGalGNliDRi~~ 112 (157)
T PRK14782 93 ISAGLLIGGALANVLDRVIY 112 (157)
T ss_pred HHHHHHHHHHHhhHHHHhhc
Confidence 34445555666666666543
No 66
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=20.31 E-value=2.3e+02 Score=19.71 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q psy15701 49 WAVVMYIGQSLKDVIQWPRP 68 (112)
Q Consensus 49 ~~~~~~~~~~iK~~~~rpRP 68 (112)
+.++.++...+-|+++|-|-
T Consensus 93 ial~LIlgGAlGNliDRi~~ 112 (185)
T PRK14774 93 ISGGLLIGGALGNVVDRVLY 112 (185)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34455556666677777654
No 67
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.26 E-value=1.4e+02 Score=22.53 Aligned_cols=17 Identities=0% Similarity=0.100 Sum_probs=12.1
Q ss_pred CcccchHHHHHHHHHhh
Q psy15701 3 FTVKNKFLYYFFYIGTY 19 (112)
Q Consensus 3 ~~~~~~~ld~~~~~it~ 19 (112)
++.+.|+..++...+.+
T Consensus 55 ~GLd~P~~~qy~~~l~~ 71 (317)
T COG0601 55 YGLDKPLYVQYLNYLKN 71 (317)
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 45667777777777774
Done!