Query psy15701
Match_columns 112
No_of_seqs 106 out of 1061
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 19:18:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2t_A Acid phosphatase; all a 99.4 1.2E-13 4.2E-18 97.4 6.3 101 6-107 57-167 (231)
2 2ipb_A PHON protein, class A n 99.4 1E-12 3.5E-17 92.6 6.6 55 54-108 97-156 (230)
3 1qi9_A Protein (vanadium bromo 98.6 1.1E-08 3.6E-13 80.0 2.1 49 57-105 378-433 (556)
4 3bb0_A Vanadium chloroperoxida 98.2 3.6E-06 1.2E-10 66.5 7.9 54 52-105 345-419 (609)
5 1up8_A Vanadium-dependent brom 97.2 0.00059 2E-08 53.8 6.0 29 80-108 477-505 (598)
6 1v54_I STA, cytochrome C oxida 45.9 12 0.00041 21.3 1.9 27 41-67 17-43 (73)
7 2hnh_A DNA polymerase III alph 23.4 65 0.0022 26.7 3.4 23 82-104 752-774 (910)
8 3f2b_A DNA-directed DNA polyme 20.2 91 0.0031 26.4 3.7 23 82-104 853-875 (1041)
9 2zvk_U DNA polymerase ETA, pro 17.7 37 0.0013 15.2 0.5 7 64-70 2-8 (26)
10 2hpi_A DNA polymerase III alph 16.6 1.1E+02 0.0039 26.3 3.5 23 82-104 809-831 (1220)
No 1
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.45 E-value=1.2e-13 Score=97.40 Aligned_cols=101 Identities=13% Similarity=-0.067 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHhhcchhHHHHHHHHHHHHhcchhh--HHHHHH-HHHH-HH-HHHHHHHHhhcCCCCCCCc---ccc--
Q psy15701 6 KNKFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNV--GRRIIT-VWAV-VM-YIGQSLKDVIQWPRPICPP---AVR-- 75 (112)
Q Consensus 6 ~~~~ld~~~~~it~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~-~~-~~~~~iK~~~~rpRP~~~~---~~~-- 75 (112)
.++.+|..+..++..|+...+.+.. .+.+...++. .....+ ..+. +. +++..+|..++||||+... ...
T Consensus 57 ~~~~~~~a~~~~t~~~~~~~~~~~~-~l~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~lK~~~~r~RP~~~~~~~~~~p~ 135 (231)
T 1d2t_A 57 NTERGKLAAEDANLSSGGVANAFSG-AFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCNTT 135 (231)
T ss_dssp TSHHHHHHHHHHHCCHHHHHHHTHH-HHTSCCSTTTCHHHHHHHHHTHHHHHTTTTHHHHHHHCCCCHHHHHTCCCSCC-
T ss_pred CHHHHHHHHHhhccCchhHHHHHHH-HHccccChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCccCCCCceecC
Confidence 4788899999999888754333322 2333333322 122222 2222 23 6789999999999998321 111
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q psy15701 76 VQSKWSLEYGMPSTHAMIAVAIPMASILFTVD 107 (112)
Q Consensus 76 ~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~ 107 (112)
.....+.++||||||++.++++++++..+..+
T Consensus 136 ~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~ 167 (231)
T 1d2t_A 136 EQDKLSKNGSYPSGHTSIGWATALVLAEINPQ 167 (231)
T ss_dssp -CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGG
T ss_pred CcCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11114789999999999999998887766544
No 2
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.36 E-value=1e-12 Score=92.57 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCCCCC-Cccccccc----cCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q psy15701 54 YIGQSLKDVIQWPRPIC-PPAVRVQS----KWSLEYGMPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 54 ~~~~~iK~~~~rpRP~~-~~~~~~~~----~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
+++..+|+.++||||+. .+.....+ ...+++|||||||+.++++++++..+..++
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~ 156 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPER 156 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999983 22111111 136789999999999999988777665543
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=98.61 E-value=1.1e-08 Score=80.01 Aligned_cols=49 Identities=20% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHHHHhhcCCCCCCC-ccc-cccc-----cCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy15701 57 QSLKDVIQWPRPICP-PAV-RVQS-----KWSLEYGMPSTHAMIAVAIPMASILFT 105 (112)
Q Consensus 57 ~~iK~~~~rpRP~~~-~~~-~~~~-----~~~~~~SFPSgHt~~a~~~~~~l~~~~ 105 (112)
+++|.+++||||+.. +.. .+.. .+..++||||||++.++++++++..++
T Consensus 378 ~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~ 433 (556)
T 1qi9_A 378 ELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALI 433 (556)
T ss_dssp HHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 589999999999852 211 1111 146899999999999999999887766
No 4
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=98.23 E-value=3.6e-06 Score=66.52 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCCCCCC-----------Ccccc-ccc---------cCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy15701 52 VMYIGQSLKDVIQWPRPIC-----------PPAVR-VQS---------KWSLEYGMPSTHAMIAVAIPMASILFT 105 (112)
Q Consensus 52 ~~~~~~~iK~~~~rpRP~~-----------~~~~~-~~~---------~~~~~~SFPSgHt~~a~~~~~~l~~~~ 105 (112)
+.+.++.+|..++|+||+. ++... +.. .+...+||||||++.+++.+.++..++
T Consensus 345 A~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~~f 419 (609)
T 3bb0_A 345 AGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYY 419 (609)
T ss_dssp HHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCCcCchhhcccccccCCccchhhcccccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455678999999999963 11111 110 136789999999999999999988877
No 5
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=97.20 E-value=0.00059 Score=53.77 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=24.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q psy15701 80 WSLEYGMPSTHAMIAVAIPMASILFTVDK 108 (112)
Q Consensus 80 ~~~~~SFPSgHt~~a~~~~~~l~~~~~~~ 108 (112)
....+||||||++.+++++..+..++.++
T Consensus 477 tP~~pSYPSGHAt~S~A~A~vL~~lf~~~ 505 (598)
T 1up8_A 477 SPFHPSYGSGHAVVAGACVTILKAFFDSG 505 (598)
T ss_dssp SCSSCSSSCHHHHHHHHHHHHHHHHBTTT
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhccc
Confidence 36789999999999999999887776543
No 6
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=45.90 E-value=12 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15701 41 VGRRIITVWAVVMYIGQSLKDVIQWPR 67 (112)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~iK~~~~rpR 67 (112)
.-..+...++++.++....|..+..||
T Consensus 17 lr~~i~~a~~lsl~~~~~~k~~v~~pR 43 (73)
T 1v54_I 17 LRFHIVGAFMVSLGFATFYKFAVAEKR 43 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345566677777777778888877766
No 7
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=23.40 E-value=65 Score=26.74 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=17.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHH
Q psy15701 82 LEYGMPSTHAMIAVAIPMASILF 104 (112)
Q Consensus 82 ~~~SFPSgHt~~a~~~~~~l~~~ 104 (112)
.+|+||-+|+++-..++.-..++
T Consensus 752 a~YgFnkSHaaaYa~~ay~tAyl 774 (910)
T 2hnh_A 752 AGYGFNKSHSAAYALVSYQTLWL 774 (910)
T ss_dssp HTTCBCHHHHHHHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHHHHH
Confidence 58999999998776666655555
No 8
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=20.23 E-value=91 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=17.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHH
Q psy15701 82 LEYGMPSTHAMIAVAIPMASILF 104 (112)
Q Consensus 82 ~~~SFPSgHt~~a~~~~~~l~~~ 104 (112)
.+|+||=+||++-..++.-..++
T Consensus 853 i~YgFnKSHAaAYal~ay~tAyl 875 (1041)
T 3f2b_A 853 IKYMFPKAHAAAYVLMAVRIAYF 875 (1041)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCccchhhhHHHHHHHHHH
Confidence 47999999998777776656555
No 9
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=17.66 E-value=37 Score=15.15 Aligned_cols=7 Identities=43% Similarity=0.719 Sum_probs=5.0
Q ss_pred cCCCCCC
Q psy15701 64 QWPRPIC 70 (112)
Q Consensus 64 ~rpRP~~ 70 (112)
+||||-.
T Consensus 2 KR~R~~g 8 (26)
T 2zvk_U 2 KRPRPEG 8 (26)
T ss_pred CCCCccc
Confidence 5888863
No 10
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=16.62 E-value=1.1e+02 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=17.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHH
Q psy15701 82 LEYGMPSTHAMIAVAIPMASILF 104 (112)
Q Consensus 82 ~~~SFPSgHt~~a~~~~~~l~~~ 104 (112)
.+|+||-+|+++-..++.-..++
T Consensus 809 a~YgFnKSHAaAYa~laYqtAyL 831 (1220)
T 2hpi_A 809 ANYGFNKSHAAAYSLLSYQTAYV 831 (1220)
T ss_dssp TTSCBCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCcchHHHHHHHHHHHHHH
Confidence 58999999998776666555554
Done!