RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15701
(112 letters)
>gnl|CDD|239482 cd03388, PAP2_SPPase1, PAP2_like proteins,
sphingosine-1-phosphatase subfamily.
Sphingosine-1-phosphatase is an intracellular enzyme
located in the endoplasmic reticulum, which regulates
the level of sphingosine-1-phosphate (S1P), a bioactive
lipid. S1P acts as a second messenger in the cell, and
extracellularly by binding to G-protein coupled
receptors of the endothelial differentiation gene
family.
Length = 151
Score = 121 bits (307), Expect = 6e-37
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 8 KFLYYFFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPR 67
FL Y+F LG FY ++ PF FWN D VGR ++ V A+ MYIGQ +KD+ PR
Sbjct: 1 PFLDYYFAFTALLGTHTFYILFLPFLFWNGDPYVGRDLVVVLALGMYIGQFIKDLFCLPR 60
Query: 68 PICPPAVRVQ-SKWSLEYGMPSTHAMIAVAIPMASILFTVDKYNY 111
P PP VR+ S +LEYG PSTHAM A AI +++ D+Y Y
Sbjct: 61 PSSPPVVRLTMSSAALEYGFPSTHAMNATAISFYLLIYLYDRYQY 105
>gnl|CDD|215288 PLN02525, PLN02525, phosphatidic acid phosphatase family protein.
Length = 352
Score = 59.0 bits (143), Expect = 1e-11
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 25 FYSIYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQS-----K 79
FY+ + P FW+ + R++ + A Y+G +KDV+ PRP CPP RV + +
Sbjct: 20 FYTAFLPLLFWSGHGKLARQMTLLMAFCDYVGNCIKDVVSAPRPSCPPVRRVTATKDEEE 79
Query: 80 WSLEYGMPSTHAM 92
++EYG+PS+H +
Sbjct: 80 NAMEYGLPSSHTL 92
>gnl|CDD|239487 cd03393, PAP2_like_3, PAP2_like_3 proteins. PAP2 is a
super-family of phosphatases and haloperoxidases. This
subgroup, which is specific to bacteria and archaea,
lacks functional characterization and may act as a
membrane-associated lipid phosphatase.
Length = 125
Score = 39.3 bits (92), Expect = 5e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 28 IYFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLE-YGM 86
I +W VD +GR + Y+ +LK+V + PRP ++ + S YG
Sbjct: 1 IVLSLIYWLVDKRLGRYLGLALCASGYLNAALKEVFKIPRPFTYDGIQAIYEESAGGYGF 60
Query: 87 PSTHAMIAVAI 97
PS HA +
Sbjct: 61 PSGHAQTSATF 71
>gnl|CDD|239486 cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 182
Score = 34.1 bits (79), Expect = 0.006
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 12 YFFYIGTYLGDEIFYSIYFPFWFWNVDYNVGRRIITVWAVVMYIG-----QSLKDVIQWP 66
F T+LG I + RR ++ ++ +G LK ++Q P
Sbjct: 30 AFMTAITFLGSPAVLLIIVLLLAL-LLLLKRRRRAALFLLLALLGGGALNTLLKLLVQRP 88
Query: 67 RPICPPAVRVQSKWSLEYGMPSTHAMIAVAI 97
RP V Y PS HAM A +
Sbjct: 89 RPPLHLLVPEGG-----YSFPSGHAMGATVL 114
>gnl|CDD|216577 pfam01569, PAP2, PAP2 superfamily. This family includes the
enzyme type 2 phosphatidic acid phosphatase (PAP2),
Glucose-6-phosphatase EC:3.1.3.9,
Phosphatidylglycerophosphatase B EC:3.1.3.27 and
bacterial acid phosphatase EC:3.1.3.2. The family also
includes a variety of haloperoxidases that function by
oxidising halides in the presence of hydrogen peroxide
to form the corresponding hypohalous acids.
Length = 123
Score = 33.2 bits (76), Expect = 0.009
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 42 GRRIITVWAVVMYIGQSLKDVIQWPRPICPPAV-RVQSKWSLEYGMPSTHAMIAVAI 97
++ + + + LK + PRP + + PS HA A A+
Sbjct: 2 LLALLLALLLALLLTVILKLLFGRPRPDVILETGPLLPQLPGYDSFPSGHAATAFAL 58
>gnl|CDD|238813 cd01610, PAP2_like, PAP2_like proteins, a super-family of
histidine phosphatases and vanadium haloperoxidases,
includes type 2 phosphatidic acid phosphatase or lipid
phosphate phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid
phosphatase, vanadium chloroperoxidases, vanadium
bromoperoxidases, and several other mostly
uncharacterized subfamilies. Several members of this
superfamily have been predicted to be transmembrane
proteins.
Length = 122
Score = 32.0 bits (73), Expect = 0.022
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 45 IITVWAVVMYIGQSLKDVIQWPRP----ICPPAVRVQSKWSLEYGMPSTHAMIAVAI 97
++ + + LK + PRP C P Y PS HA A A+
Sbjct: 8 LLLALLAGLLLTGVLKYLFGRPRPYFLLRCGPDGDPLLLTEGGYSFPSGHAAFAFAL 64
>gnl|CDD|239478 cd03383, PAP2_diacylglycerolkinase, PAP2_like proteins,
diacylglycerol_kinase like sub-family. In some
prokaryotes, PAP2_like phosphatase domains appear fused
to E. coli DAGK-like trans-membrane diacylglycerol
kinase domains. The cellular function of these
architectures remains to be determined.
Length = 109
Score = 28.8 bits (65), Expect = 0.33
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 82 LEYGMPSTHAMIAVAIPMASILFTVD 107
LE GMPS HA IA +I A L T +
Sbjct: 37 LEGGMPSGHAAIAFSIATAISLITNN 62
>gnl|CDD|176920 cd08911, START_STARD7-like, Lipid-binding START domain of mammalian
STARD7 and related proteins. This subgroup includes the
steroidogenic acute regulatory protein (StAR)-related
lipid transfer (START) domains of STARD7 (also known as
gestational trophoblastic tumor 1/GTT1). It belongs to
the START domain family, and in turn to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. The gene encoding STARD7 is overexpressed in
choriocarcinoma. STARD7 appears to be involved in the
intracellular trafficking of phosphatidycholine (PtdCho)
to mitochondria. STARD7 was shown to be surface active
and to interact differentially with phospholipid
monolayers, it showed a preference for
phosphatidylserine, cholesterol, and
phosphatidylglycerol.
Length = 207
Score = 29.2 bits (66), Expect = 0.39
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 18 TYLGDEIFY-SIYFPFWFWNVDYNVGRR-IITVWAVVMYIGQSLKDVIQWPR-PICPPAV 74
G EI Y + +P F N DY RR II ++ I + +Q P P P V
Sbjct: 88 PETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVI---VSKAVQHPSYPESPKKV 144
Query: 75 RVQSKWSL 82
RV+ WS
Sbjct: 145 RVEDYWSY 152
>gnl|CDD|239477 cd03382, PAP2_dolichyldiphosphatase, PAP2_like proteins,
dolichyldiphosphatase subfamily. Dolichyldiphosphatase
is a membrane-associated protein located in the
endoplasmic reticulum and hydrolyzes dolichyl
pyrophosphate, as well as dolichylmonophosphate at a
low rate. The enzyme is necessary for maintaining
proper levels of dolichol-linked oligosaccharides and
protein N-glycosylation, and might play a role in
re-utilization of the glycosyl carrier lipid for
additional rounds of lipid intermediate biosynthesis
after its release during protein N-glycosylation
reactions.
Length = 159
Score = 28.0 bits (63), Expect = 0.88
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 42 GRRIITVWAVVMYIGQS-----LKDVIQWPRPICPPAVRVQSKWSLEYGMPSTHA 91
R + ++ + + LK +I+ PRP YGMPS+H+
Sbjct: 39 RRELEAIYLFIGLLANEALNYVLKRIIKEPRPCSG-----AYFVRSGYGMPSSHS 88
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 26.0 bits (57), Expect = 6.3
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 59 LKDVIQWPRPICPPAVRVQSKWSLEYGMPS 88
L+ ++ + +P P++ QS+W +E P
Sbjct: 274 LRVLVDYNKP-TLPSLEEQSEWLIEDVAPH 302
>gnl|CDD|217786 pfam03907, Spo7, Spo7-like protein. S. cerevisiae Spo7 has an
unknown function, but has a role in formation of a
spherical nucleus and meiotic division.
Length = 168
Score = 25.0 bits (55), Expect = 8.4
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 9 FLYYFFYIGTYLGDEIFYSI-YFPFWFWNVDYNVGRRIITVWAVVMYIGQSLKDVIQWPR 67
FL I + E+++ + V ++ ++ + I PR
Sbjct: 34 FLSLLAGIAAFFFYELYFRPSEDSKGLVRMTLKFCLIFGVVTLLLFHLSGQYRRTIVIPR 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.143 0.487
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,008,483
Number of extensions: 520617
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 37
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)