RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15701
(112 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 6e-04
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 11 YYFFYIGTYLG-------DEIFYSIYFPFWFWNVDYNVGRRII---TVWAVVMYIGQSLK 60
Y++ +IG +L +F ++ F F + ++I T W I +L+
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LEQKIRHDSTAWNASGSILNTLQ 525
Query: 61 DVIQWPRPICP 71
+ + IC
Sbjct: 526 QLKFYKPYICD 536
>2zca_A Putative uncharacterized protein TTHB189; crispr, CSE2, plasmid,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus}
Length = 169
Score = 27.6 bits (61), Expect = 0.67
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 43 RRIITVWAVVMYIGQSLKDVIQWPRPICPPAVRVQSKWSLEY 84
R+ + + + + L D+++W P VQ++W+ EY
Sbjct: 116 RQAVALVEGGIDFARLLDDLLRWFS----PERHVQARWAREY 153
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 3 FTVKNKFLYYFFYIGTYLGDEIFYSIYFPFW----FWNVDYNVGRRIITVWA 50
F + L + ++G G EI + P + + + RRI+ WA
Sbjct: 423 FNHRASNLVWPEWMGVIHGYEIEFVFGLPLVKELNYTAEEEALSRRIMHYWA 474
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 26.6 bits (59), Expect = 2.1
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 15/57 (26%)
Query: 9 FLYYFFYIGTYL------------GDEIFYSIYFPFWFWNV---DYNVGRRIITVWA 50
++Y F Y ++ GDE+F PF + + + ++ WA
Sbjct: 426 YMYEFQYRPSFSSDMKPKTVIGDHGDELFSVFGAPFLKEGASEEEIRLSKMVMKFWA 482
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 26.2 bits (58), Expect = 2.8
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 14/56 (25%)
Query: 9 FLYYFFYIGTYL----------GDEIFYSIYFPFW----FWNVDYNVGRRIITVWA 50
+ Y F D++ Y PF + D V + +I W
Sbjct: 414 YTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRAQDRTVSKAMIAYWT 469
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 25.8 bits (57), Expect = 3.6
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 9 FLYYFFYIGTYL----------GDEIFYSIYFPFW----FWNVDYNVGRRIITVWA 50
+ Y F + + L G EI + P + + +R++ W
Sbjct: 426 YAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSLNYTTEERIFAQRLMKYWT 481
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 25.5 bits (56), Expect = 4.8
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 19/61 (31%)
Query: 9 FLYYFFYIGTYL----------GDEIFYSIYFPFWFWNV---------DYNVGRRIITVW 49
+ Y F++ GDE+ Y + P D + ++T W
Sbjct: 434 YFYAFYHHCQTDQVPAWADAAHGDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYW 493
Query: 50 A 50
Sbjct: 494 T 494
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 25.0 bits (55), Expect = 6.8
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 23/65 (35%)
Query: 9 FLYYFFYIGTYL---------------GDEIFYSIYFPFWFWNV--------DYNVGRRI 45
+LY F + G Y +++ Y D ++ +
Sbjct: 423 YLYQFSFDGDYSVFREVNHLNFEGAGHIEDLTYVFRTNSMLGGHASFPPHDKDDHMKYWM 482
Query: 46 ITVWA 50
+
Sbjct: 483 TSFIT 487
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 3 FTVKNKFLYYFFYIGTYLGDEIFYSIYFPFW----FWNVDYNVGRRIITVWA 50
F ++ L + ++G G EI + P + + + R I+ WA
Sbjct: 421 FEHRSSKLPWPEWMGVMHGYEIEFVFGLPLERRDQYTKAEEILSRSIVKRWA 472
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 24.8 bits (54), Expect = 7.3
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 3 FTVKNKFLYYFFYIGTYLGDEIFYSIYFPFW----FWNVDYNVGRRIITVWA 50
FT + + ++G GDEI Y P + V+ +G+R+++
Sbjct: 463 FTHRTSTSLWGEWMGVLHGDEIEYFFGQPLNNSLQYRPVERELGKRMLSAVI 514
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.143 0.487
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,872,960
Number of extensions: 98759
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 21
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.3 bits)