BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15702
         (259 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q62559|IFT52_MOUSE Intraflagellar transport protein 52 homolog OS=Mus musculus
           GN=Ift52 PE=1 SV=2
          Length = 426

 Score =  257 bits (657), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/261 (49%), Positives = 174/261 (66%), Gaps = 8/261 (3%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct: 45  ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDSGGDILVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + +GVLNR I+ A  + V          + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYYKYFHPKEALVSDGVLNREISRAAGKAVPGVIDEENSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRG-GKLVVLGSAALFSDQY 173
            FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +G GKL VLGS  +FSDQY
Sbjct: 165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQY 224

Query: 174 LEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEV 233
           L++EEN K+  ++  +L T DI+LNQIDA+D +++DYT+VP+    + QL+  L E  E 
Sbjct: 225 LDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYTMVPDTATLSEQLRVCLQEGDEN 284

Query: 234 LDDYTRFFSLDLSKVDMSTVP 254
             D+T  F L + ++D + +P
Sbjct: 285 PRDFTTLFDLSIYQLDTTCLP 305


>sp|Q9Y366|IFT52_HUMAN Intraflagellar transport protein 52 homolog OS=Homo sapiens
           GN=IFT52 PE=2 SV=3
          Length = 437

 Score =  250 bits (639), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/258 (47%), Positives = 171/258 (66%), Gaps = 7/258 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YLD GG + + LGE GE    TNINFLLE
Sbjct: 45  ITSEKLNGVKLWITAGPREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  ++KYFHPKE  + +GVLNR I+ A  + V       +  + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYHKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct: 165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++  +L T DI+LNQIDA+D +++DY ++P     + + +  L E  E+ 
Sbjct: 225 DKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIP 284

Query: 235 DDYTRFFSLDLSKVDMST 252
            D+T  F L + ++D ++
Sbjct: 285 RDFTTLFDLSIFQLDTTS 302


>sp|B3EAS4|PURA_GEOLS Adenylosuccinate synthetase OS=Geobacter lovleyi (strain ATCC
           BAA-1151 / DSM 17278 / SZ) GN=purA PE=3 SV=1
          Length = 430

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 68/180 (37%), Gaps = 49/180 (27%)

Query: 84  KECFIGNGVL----------NRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPS--- 130
           K C IGNGV+          NR  A     D +   L+ SLH + PY  ++++ + +   
Sbjct: 64  KRCVIGNGVVLDPEVFIMEVNRLKAAGRLEDDSTLLLSESLHIIMPYHKAIDIAREAKSG 123

Query: 131 -VPVFSTGSASCPLNRPVVSFYRDKT--RGGKLVVLGSAALFSDQYLEREENDKMRQIIL 187
              + +TG    P        Y DK   RG +L+ L     FS +     EN + +  IL
Sbjct: 124 DKKIGTTGRGIGPC-------YEDKIGRRGIRLMDLIDPVAFSRKL---RENLEEKNAIL 173

Query: 188 SFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSK 247
             L  + +  N+I                         T  +F E+L  Y    SL LSK
Sbjct: 174 ERLGEEPLGYNEI-----------------------YRTYQDFAEILKKYMADTSLVLSK 210


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,689,683
Number of Sequences: 539616
Number of extensions: 3925046
Number of successful extensions: 8789
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8782
Number of HSP's gapped (non-prelim): 13
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)