RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15702
(259 letters)
>gnl|CDD|220425 pfam09822, ABC_transp_aux, ABC-type uncharacterized transport
system. This domain is found in various eukaryotic and
prokaryotic intra-flagellar transport proteins involved
in gliding motility, as well as in several hypothetical
proteins.
Length = 268
Score = 41.2 bits (97), Expect = 2e-04
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 3 TPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIAL---------GEEGERGSS 53
E+ A L + GP + EL +L YL GG LL+ L
Sbjct: 188 VGEIPDDADLLVIAGPTSDLSEEELYALDQYLMRGGKLLVFLDPVSVDLDSLLNTGGKRD 247
Query: 54 TNINFLLEQYGVSVNSDCVV 73
+N+ LLE YGV +N V+
Sbjct: 248 SNLEDLLESYGVRLNPGLVL 267
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 35.8 bits (83), Expect = 0.019
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 169 FSDQYLEREENDKMRQII---LSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKS 225
FSD+ L ++ +K R+I FLLT NL++ D V E R+ ++L S
Sbjct: 649 FSDEIL-KQVVEKYRKIRWNTYRFLLTY-ANLDKFDPLFNSVAVEKFPEEDRWILSRLNS 706
Query: 226 TLMEFQEVLDDY---------TRFFSLDLS 246
+ E E L+ Y F +LS
Sbjct: 707 LVEEVNEALEKYNFHKVLRALQDFIVEELS 736
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 33.0 bits (76), Expect = 0.17
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 23/93 (24%)
Query: 169 FSDQYLEREENDKMRQII------LSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQ 222
FSD+ L++ +R++ FLL NL+ D V L R+ ++
Sbjct: 640 FSDEILKQ-----VREVYRKIRNTYRFLLG---NLDDFDPKKDAVLPEELRELDRWILSR 691
Query: 223 LKSTLMEFQEVLDDY---------TRFFSLDLS 246
L S + E +E ++Y F S DLS
Sbjct: 692 LNSLVKEVREAYENYDFHKVVRALMNFVSEDLS 724
>gnl|CDD|227488 COG5159, RPN6, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 421
Score = 29.5 bits (66), Expect = 2.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 28 NSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHF 77
N+LK Y D ++A+ E S + + L QY ++ D +R H
Sbjct: 273 NTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHL 322
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 29.4 bits (66), Expect = 2.1
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 187 LSFLLTDDINLNQIDADDADVTDYTLVPEI-RYTAAQLKSTLMEFQEVLDDY-------- 237
L +LL NL+ D+A Y +P I +Y QL++ + E +E D+Y
Sbjct: 677 LRYLLG---NLHDWKPDNA--VPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQI 731
Query: 238 -TRFFSLDLSKV 248
RF +DLS
Sbjct: 732 LQRFTIVDLSNF 743
>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase.
Members of this protein family are
4-hydroxy-2-oxovalerate aldolase, also called
4-hydroxy-2-ketovalerate aldolase and
2-oxo-4-hydroxypentanoate aldolase. This enzyme, part
of the pathway for the meta-cleavage of catechol,
produces pyruvate and acetaldehyde. Acetaldehyde is
then converted by acetaldehyde dehydrogenase
(acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two
enzymes are tightly associated [Energy metabolism,
Other].
Length = 333
Score = 28.5 bits (64), Expect = 3.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 19 REQFTITELNSLKTYLDEGGSLLIALGE-EGERGSSTNINFLLEQYGVSVNSD 70
R QFTI ++ ++ LDE G I + +G GSS N YG S ++D
Sbjct: 18 RHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFN-------YGFSAHTD 63
>gnl|CDD|221861 pfam12929, Mid1, Stretch-activated Ca2+-permeable channel
component. MID1 is a yeast Saccharomyces cerevisiae
gene encoding a plasma membrane protein required for
Ca2+ influx induced by the mating pheromone,
alpha-factor. Mid1 protein plays a crucial role in
supplying Ca2+ during the mating process. Mid1 is
composed of 548-amino-acid residues with four
hydrophobic regions named H1, H2, H3 and H4, and two
cysteine-rich regions (C1 and C2) at the C-terminal.
This family contains the H3, H4, C1 and C2 regions.
suggesting that H1 is a signal sequence responsible for
the alpha-factor-induced Mid1 delivery to the plasma
membrane. The region from H1 to H3 is required for the
localisation of Mid1 in the plasma and ER membranes.
Trafficking of Mid1-GFP to the plasma membrane is
dependent on the N-glycosylation of Mid1 and the
transporter protein Sec12. This findings suggests that
the trafficking of Mid1-GFP to the plasma membrane
requires a Sec12-dependent pathway from the ER to the
Golgi, and that Mid1 is recruited via a Sec6- and
Sec7-independent pathway from the Golgi to the plasma
membrane.
Length = 427
Score = 27.7 bits (62), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 17 GPREQFTITELNSLKTY 33
P+EQF +T LN+ TY
Sbjct: 186 KPKEQFYVTGLNASTTY 202
>gnl|CDD|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including
NLI-interacting factor [Transcription].
Length = 390
Score = 27.8 bits (62), Expect = 6.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 148 VSFYRDKTRGGKLVVLG----SAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDAD 203
+ Y TR + + LF+D+ L R+E+ + Q LS L D N+ I D
Sbjct: 94 LHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDD 153
Query: 204 DADV 207
DV
Sbjct: 154 RGDV 157
>gnl|CDD|222630 pfam14258, DUF4350, Domain of unknown function (DUF4350). This
domain family is found in bacteria, archaea and
eukaryotes, and is approximately 70 amino acids in
length.
Length = 69
Score = 25.6 bits (57), Expect = 6.9
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 10 ASLFICTGPREQFTITELNSLKTYLDEGGSLLIA 43
+L + GP + E+ +L +++ GG+L++A
Sbjct: 36 GTLLV-IGPSLNLSPEEIEALLEFVEAGGTLVVA 68
>gnl|CDD|222333 pfam13709, DUF4159, Domain of unknown function (DUF4159).
Members of this family are hypothetical proteins. TM
prediction shows them to have two transmembrane
regions, with a cytosolic region of about 25 amino
acids between the two, and an N-terminus outside the
membrane.
Length = 203
Score = 26.8 bits (60), Expect = 9.8
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 3 TPELLRAASLFICTGPREQ-FTITELNSLKTYLDEGGSLLI 42
EL L+ G + E+ +L+ YL GG LL
Sbjct: 47 DDELFFYPFLYW-PGHGNVPLSDAEVANLRRYLRNGGFLLF 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,263,451
Number of extensions: 1262051
Number of successful extensions: 1009
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1007
Number of HSP's successfully gapped: 16
Length of query: 259
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 164
Effective length of database: 6,723,972
Effective search space: 1102731408
Effective search space used: 1102731408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)