RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15702
         (259 letters)



>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 118

 Score = 25.7 bits (56), Expect = 3.7
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 14/72 (19%)

Query: 179 NDKMRQIILSFLLTDDINLNQIDADD-------ADVTDYTLVPE---IRY----TAAQLK 224
            +++ ++  +  +T  +NL  +   D       +D +D     E    ++     A + K
Sbjct: 46  REQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFK 105

Query: 225 STLMEFQEVLDD 236
               E Q +L D
Sbjct: 106 QKFEECQRLLLD 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 937,732
Number of extensions: 41734
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)